Wall clock time and date at job start Mon Mar 30 2020 21:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31789 * 118.55278 * 2 1 4 4 C 1.32578 * 120.66356 * 180.02562 * 3 2 1 5 5 O 1.34065 * 136.38627 * 180.02562 * 4 3 2 6 6 N 1.21006 * 112.97322 * 179.16448 * 5 4 3 7 7 C 1.30193 * 113.37641 * 0.78178 * 6 5 4 8 8 C 1.41116 * 118.37051 * 359.72653 * 4 3 2 9 9 C 1.39712 * 119.07031 * 0.55977 * 8 4 3 10 10 N 1.38034 * 120.95778 * 179.71339 * 9 8 4 11 11 C 1.46501 * 120.00058 * 179.72148 * 10 9 8 12 12 H 1.09005 * 109.47511 * 325.00188 * 11 10 9 13 13 C 1.53003 * 109.47002 * 84.99998 * 11 10 9 14 14 C 1.50700 * 109.47364 * 204.99875 * 11 10 9 15 15 H 1.07999 * 119.99498 * 354.49233 * 14 11 10 16 16 C 1.37874 * 120.00257 * 174.48812 * 14 11 10 17 17 N 1.31513 * 120.00294 * 164.80037 * 16 14 11 18 18 Si 1.86802 * 119.99934 * 344.79307 * 16 14 11 19 19 H 1.48493 * 109.47639 * 270.00209 * 18 16 14 20 20 H 1.48507 * 109.47028 * 30.00450 * 18 16 14 21 21 H 1.48503 * 109.46976 * 149.99960 * 18 16 14 22 22 N 1.31978 * 118.55252 * 180.02562 * 2 1 3 23 23 H 1.09002 * 109.47466 * 269.97649 * 1 2 3 24 24 H 1.09001 * 109.47300 * 29.97714 * 1 2 3 25 25 H 1.09008 * 109.47210 * 149.97478 * 1 2 3 26 26 H 1.07993 * 127.36957 * 179.39069 * 7 6 5 27 27 H 0.96997 * 120.00168 * 359.72653 * 10 9 8 28 28 H 1.08999 * 109.47417 * 293.54677 * 13 11 10 29 29 H 1.09000 * 109.46891 * 53.54723 * 13 11 10 30 30 H 1.08999 * 109.47166 * 173.54185 * 13 11 10 31 31 H 0.97002 * 119.99750 * 354.89772 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1368 1.1576 0.0000 4 6 3.4617 1.2064 -0.0005 5 8 4.3976 2.1663 -0.0003 6 7 5.5249 1.7268 0.0152 7 6 5.5722 0.4257 0.0118 8 6 4.1775 -0.0097 0.0049 9 6 3.4696 -1.2141 -0.0014 10 7 4.1302 -2.4261 -0.0024 11 6 3.3669 -3.6765 -0.0029 12 1 2.4592 -3.5484 0.5870 13 6 2.9933 -4.0454 -1.4400 14 6 4.2044 -4.7766 0.5966 15 1 5.2343 -4.5880 0.8612 16 6 3.6558 -6.0239 0.8072 17 7 4.4376 -7.0550 1.0420 18 14 1.8020 -6.2491 0.7592 19 1 1.2434 -6.0471 2.1202 20 1 1.2069 -5.2575 -0.1724 21 1 1.4821 -7.6218 0.2915 22 7 2.1377 -1.1593 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5143 26 1 6.4537 -0.1982 0.0139 27 1 5.0999 -2.4499 -0.0027 28 1 2.2950 -3.3074 -1.8348 29 1 3.8921 -4.0613 -2.0564 30 1 2.5266 -5.0304 -1.4527 31 1 5.4011 -6.9540 0.9940 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260020619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:21 Heat of formation + Delta-G solvation = 83.878352 kcal Electronic energy + Delta-G solvation = -17727.480499 eV Core-core repulsion = 14818.752952 eV Total energy + Delta-G solvation = -2908.727547 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.78656 -41.58074 -38.35075 -35.53694 -34.55639 -34.04558 -33.05446 -30.94256 -29.54534 -26.94067 -26.16152 -23.89645 -23.44754 -22.14620 -20.58127 -19.79303 -18.91342 -18.86035 -18.21181 -16.75250 -16.10759 -15.90925 -15.25996 -15.12352 -14.86404 -14.65216 -14.40582 -14.01156 -13.39076 -13.25260 -13.22483 -12.99058 -12.69116 -12.44414 -12.10253 -11.90053 -11.46929 -11.30219 -11.10248 -10.79734 -10.56450 -10.38933 -9.18945 -8.79316 -6.47582 -0.43269 0.00265 1.02543 1.14213 1.53404 1.54576 1.73536 2.01063 2.47551 2.58914 2.78639 3.02151 3.10212 3.26390 3.47700 3.78108 3.96277 4.47961 4.66120 4.70489 4.75400 4.80674 4.84651 4.87754 5.07904 5.34630 5.41959 5.56101 5.59873 5.93698 6.08167 6.42985 6.56251 6.95855 7.18721 7.29658 8.58421 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028066 B = 0.006969 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.393325 B = 4016.845247 C = 4798.504161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.401 3.599 3 N -0.565 5.565 4 C 0.275 3.725 5 O 0.062 5.938 6 N -0.350 5.350 7 C 0.089 3.911 8 C -0.370 4.370 9 C 0.512 3.488 10 N -0.657 5.657 11 C 0.251 3.749 12 H 0.047 0.953 13 C -0.149 4.149 14 C -0.619 4.619 15 H 0.036 0.964 16 C -0.005 4.005 17 N -0.930 5.930 18 Si 1.072 2.928 19 H -0.277 1.277 20 H -0.232 1.232 21 H -0.285 1.285 22 N -0.600 5.600 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.239 0.761 27 H 0.415 0.585 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 12.629 -3.587 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.132 3.868 3 N -0.299 5.299 4 C 0.086 3.914 5 O 0.015 5.985 6 N -0.063 5.063 7 C -0.101 4.101 8 C -0.384 4.384 9 C 0.259 3.741 10 N -0.282 5.282 11 C 0.147 3.853 12 H 0.065 0.935 13 C -0.207 4.207 14 C -0.657 4.657 15 H 0.055 0.945 16 C -0.205 4.205 17 N -0.565 5.565 18 Si 0.892 3.108 19 H -0.203 1.203 20 H -0.155 1.155 21 H -0.211 1.211 22 N -0.330 5.330 23 H 0.126 0.874 24 H 0.125 0.875 25 H 0.119 0.881 26 H 0.255 0.745 27 H 0.252 0.748 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.802 12.392 -3.360 14.530 hybrid contribution 2.960 0.080 0.019 2.961 sum -3.842 12.472 -3.341 13.472 Atomic orbital electron populations 1.20818 0.81590 1.05727 1.05688 1.23971 0.99238 0.80034 0.83544 1.67236 1.04145 1.30930 1.27607 1.21783 0.90752 0.86247 0.92607 1.84803 1.08778 1.31571 1.73317 1.73636 0.98011 1.14212 1.20441 1.26053 0.96654 0.90387 0.96983 1.21239 0.96625 0.95892 1.24672 1.17981 0.88169 0.84713 0.83201 1.45119 1.09517 1.02595 1.70972 1.18996 0.92377 0.79815 0.94123 0.93499 1.22353 1.00079 1.00656 0.97654 1.22267 0.98821 0.97461 1.47141 0.94525 1.26955 1.10217 0.91403 0.91946 1.70942 1.05719 1.32392 1.47400 0.83800 0.70854 0.77269 0.78831 1.20260 1.15521 1.21108 1.68329 1.06548 1.30063 1.28109 0.87431 0.87507 0.88103 0.74505 0.74757 0.93303 0.93714 0.92471 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.29 71.23 0.73 -0.81 16 2 C 0.40 11.93 7.62 138.69 1.06 12.98 16 3 N -0.57 -18.02 10.34 -301.27 -3.11 -21.13 16 4 C 0.27 9.03 8.82 85.29 0.75 9.78 16 5 O 0.06 1.96 11.11 71.29 0.79 2.75 16 6 N -0.35 -10.17 11.96 -53.18 -0.64 -10.80 16 7 C 0.09 2.31 12.45 86.98 1.08 3.40 16 8 C -0.37 -11.75 6.48 -20.17 -0.13 -11.88 16 9 C 0.51 17.81 7.50 133.26 1.00 18.81 16 10 N -0.66 -23.87 5.19 -327.74 -1.70 -25.57 16 11 C 0.25 10.58 2.14 44.25 0.09 10.68 16 12 H 0.05 2.07 6.21 -2.38 -0.01 2.05 16 13 C -0.15 -5.78 8.78 71.98 0.63 -5.15 16 14 C -0.62 -31.41 9.02 25.60 0.23 -31.18 16 15 H 0.04 2.00 7.96 -2.91 -0.02 1.98 16 16 C 0.00 -0.25 5.33 84.65 0.45 0.20 16 17 N -0.93 -54.22 13.70 21.45 0.29 -53.92 16 18 Si 1.07 45.84 26.17 68.60 1.80 47.63 16 19 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 20 H -0.23 -8.65 5.54 99.48 0.55 -8.10 16 21 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 22 N -0.60 -20.62 9.27 -185.42 -1.72 -22.34 16 23 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 26 H 0.24 4.15 8.06 -2.91 -0.02 4.13 16 27 H 0.41 13.63 8.55 -92.71 -0.79 12.84 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 2.25 5.06 -2.39 -0.01 2.24 16 31 H 0.26 15.13 8.73 -92.71 -0.81 14.33 16 Total: -1.00 -62.77 271.18 1.81 -60.96 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.19 Total: 15.61 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.90 Total: 6.82 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -6.87 Total: -133.77 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.79 Total: 2.75 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.80 Total: 47.63 kcal Total: -62.77 1.81 -60.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260020619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.843 kcal (2) G-P(sol) polarization free energy of solvation -62.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds