Wall clock time and date at job start Mon Mar 30 2020 21:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48502 * 109.47217 * 270.00476 * 3 2 1 5 5 H 1.48501 * 109.47343 * 29.99881 * 3 2 1 6 6 H 1.48497 * 109.47230 * 150.00307 * 3 2 1 7 7 C 1.37879 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99751 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47079 * 180.02562 * 9 7 2 11 11 H 1.09007 * 109.46664 * 54.99971 * 10 9 7 12 12 C 1.53000 * 109.47320 * 295.00188 * 10 9 7 13 13 N 1.46903 * 109.46937 * 64.99700 * 12 10 9 14 14 C 1.50701 * 109.46897 * 174.99699 * 10 9 7 15 15 C 1.38490 * 119.73979 * 85.00752 * 14 10 9 16 16 C 1.37817 * 118.90905 * 180.24863 * 15 14 10 17 17 C 1.39174 * 119.51358 * 359.18379 * 16 15 14 18 18 C 1.39122 * 118.06133 * 0.97113 * 17 16 15 19 19 N 1.31732 * 120.76915 * 359.43620 * 18 17 16 20 20 O 1.35956 * 111.14719 * 181.26336 * 17 16 15 21 21 C 1.44162 * 109.12163 * 340.49477 * 20 17 16 22 22 C 1.51327 * 133.33039 * 178.89046 * 16 15 14 23 23 H 0.96999 * 119.99788 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46841 * 60.00208 * 9 7 2 25 25 H 1.09002 * 109.46701 * 300.00583 * 9 7 2 26 26 H 1.08990 * 109.46973 * 184.99778 * 12 10 9 27 27 H 1.08996 * 109.46469 * 305.00083 * 12 10 9 28 28 H 1.00900 * 110.99567 * 56.05202 * 13 12 10 29 29 H 1.00896 * 110.99411 * 179.97438 * 13 12 10 30 30 H 1.08002 * 120.54272 * 359.96627 * 15 14 10 31 31 H 1.08004 * 119.61769 * 179.41638 * 18 17 16 32 32 H 1.08998 * 111.11071 * 269.66569 * 21 20 17 33 33 H 1.09000 * 110.64612 * 146.32189 * 21 20 17 34 34 H 1.09002 * 110.93529 * 313.67519 * 22 16 15 35 35 H 1.08994 * 110.93690 * 77.31773 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 1 3.5866 -3.1757 -0.8415 12 6 3.6173 -3.3203 1.3077 13 7 2.1535 -3.4256 1.3730 14 6 5.5235 -2.6383 -0.1244 15 6 6.3069 -2.4994 1.0091 16 6 7.6786 -2.4981 0.8749 17 6 8.2441 -2.6528 -0.3874 18 6 7.3883 -2.7833 -1.4764 19 7 6.0813 -2.7718 -1.3116 20 8 9.6020 -2.6539 -0.3196 21 6 10.0133 -2.0502 0.9232 22 6 8.8181 -2.3505 1.8595 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6797 0.8895 25 1 3.8745 -0.6807 -0.8905 26 1 4.0554 -4.3176 1.3467 27 1 3.9773 -2.7320 2.1516 28 1 1.7897 -3.9116 0.5670 29 1 1.8612 -3.8746 2.2280 30 1 5.8505 -2.3893 1.9817 31 1 7.8001 -2.8952 -2.4685 32 1 10.1542 -0.9753 0.8098 33 1 10.9234 -2.5202 1.2961 34 1 8.6387 -1.5189 2.5410 35 1 8.9782 -3.2765 2.4117 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260021895.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:28 Heat of formation + Delta-G solvation = 13.079990 kcal Electronic energy + Delta-G solvation = -17890.380632 eV Core-core repulsion = 15082.123381 eV Total energy + Delta-G solvation = -2808.257251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36079 -38.77991 -35.88785 -33.21269 -32.23090 -31.39388 -30.13525 -29.06098 -26.13179 -24.35129 -22.96869 -22.04037 -21.65735 -19.54196 -17.44606 -17.25560 -16.81761 -16.19404 -15.52731 -14.77316 -14.36809 -14.25950 -13.89044 -13.77591 -13.42482 -13.35147 -12.80915 -12.46702 -12.36761 -11.82824 -11.73417 -11.52823 -11.34360 -10.91755 -10.69623 -10.06443 -9.83128 -9.66997 -9.38010 -9.30211 -8.96296 -8.29394 -8.09025 -7.43859 -5.74445 -3.65804 1.27751 1.29347 3.12030 3.44167 3.51295 3.54579 3.88057 4.19372 4.33254 4.51469 4.67008 4.72783 4.78043 5.11546 5.16820 5.38919 5.45297 5.48911 5.50856 5.64028 5.69136 5.82713 5.88265 6.07166 6.07958 6.20060 6.44332 6.65178 6.80587 7.04529 7.31095 7.47776 7.92844 8.01905 8.22377 8.24582 8.85887 9.47208 9.87883 11.38077 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.027300 B = 0.006129 C = 0.005650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.410743 B = 4567.664740 C = 4954.623106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.061 3.939 3 Si 0.862 3.138 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.478 4.478 8 H 0.107 0.893 9 C 0.006 3.994 10 C -0.027 4.027 11 H 0.085 0.915 12 C 0.087 3.913 13 N -0.807 5.807 14 C 0.131 3.869 15 C -0.122 4.122 16 C -0.134 4.134 17 C 0.031 3.969 18 C 0.092 3.908 19 N -0.448 5.448 20 O -0.302 6.302 21 C 0.051 3.949 22 C -0.111 4.111 23 H 0.256 0.744 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.004 0.996 27 H 0.064 0.936 28 H 0.339 0.661 29 H 0.321 0.679 30 H 0.139 0.861 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.013 -6.833 4.267 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.137 4.137 3 Si 0.691 3.309 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.516 4.516 8 H 0.124 0.876 9 C -0.032 4.032 10 C -0.047 4.047 11 H 0.103 0.897 12 C -0.045 4.045 13 N -0.337 5.337 14 C -0.007 4.007 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.017 4.017 18 C -0.067 4.067 19 N -0.157 5.157 20 O -0.216 6.216 21 C -0.024 4.024 22 C -0.148 4.148 23 H 0.066 0.934 24 H 0.030 0.970 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.083 0.917 28 H 0.152 0.848 29 H 0.134 0.866 30 H 0.156 0.844 31 H 0.175 0.825 32 H 0.095 0.905 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.539 -6.084 3.374 18.868 hybrid contribution 1.278 0.284 0.987 1.639 sum 18.817 -5.799 4.361 20.167 Atomic orbital electron populations 1.69888 1.05896 1.25862 1.53582 1.24928 0.94574 0.98061 0.96138 0.87076 0.80371 0.85388 0.78093 1.20855 1.21830 1.19700 1.21425 0.88306 0.95450 1.46431 0.87568 1.19569 0.98503 0.89177 0.95966 1.20131 0.85170 1.01285 0.98087 0.89693 1.21636 0.89408 0.95975 0.97452 1.58955 1.08472 1.60343 1.05922 1.21662 0.97795 0.94047 0.87223 1.21297 0.91208 1.00616 1.01036 1.21058 0.95047 1.03501 0.94625 1.20663 0.84045 1.01239 0.95708 1.22042 0.87190 1.00492 0.96928 1.67511 1.10310 1.11615 1.26252 1.86859 1.17319 1.76690 1.40693 1.23900 0.97935 0.98943 0.81639 1.21775 0.91511 1.03887 0.97606 0.93407 0.96963 0.97300 0.97804 0.91715 0.84767 0.86644 0.84359 0.82497 0.90453 0.87604 0.88646 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 2 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 3 Si 0.86 22.48 27.47 -169.99 -4.67 17.81 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 6 H -0.27 -6.89 6.54 56.52 0.37 -6.52 16 7 C -0.48 -13.25 8.50 -34.44 -0.29 -13.54 16 8 H 0.11 3.01 5.36 -52.49 -0.28 2.72 16 9 C 0.01 0.14 3.50 -27.88 -0.10 0.04 16 10 C -0.03 -0.54 2.44 -91.77 -0.22 -0.76 16 11 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 12 C 0.09 1.51 5.44 -3.82 -0.02 1.49 16 13 N -0.81 -14.90 6.70 -10.37 -0.07 -14.96 16 14 C 0.13 2.39 5.80 -82.49 -0.48 1.91 16 15 C -0.12 -1.91 9.17 -39.64 -0.36 -2.28 16 16 C -0.13 -1.88 6.34 -104.12 -0.66 -2.54 16 17 C 0.03 0.45 7.08 -38.91 -0.28 0.17 16 18 C 0.09 1.43 11.22 -17.27 -0.19 1.23 16 19 N -0.45 -8.18 10.24 -9.21 -0.09 -8.28 16 20 O -0.30 -3.92 11.12 -19.60 -0.22 -4.14 16 21 C 0.05 0.46 8.02 38.09 0.31 0.76 16 22 C -0.11 -1.07 7.11 -26.64 -0.19 -1.26 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 25 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 26 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.06 1.11 6.79 -51.93 -0.35 0.75 16 28 H 0.34 6.07 8.27 -39.29 -0.33 5.75 16 29 H 0.32 5.03 9.08 -39.29 -0.36 4.67 16 30 H 0.14 1.97 6.46 -52.49 -0.34 1.63 16 31 H 0.16 2.02 8.06 -52.48 -0.42 1.59 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -33.23 286.27 -7.10 -40.33 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.55 Total: 5.59 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -2.59 Total: -13.05 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.61 Total: -50.85 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.22 Total: -4.14 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.23 -7.10 -40.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021895.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.410 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds