Wall clock time and date at job start Mon Mar 30 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31696 * 118.75467 * 2 1 4 4 C 1.32762 * 120.69231 * 179.97438 * 3 2 1 5 5 O 1.34649 * 134.85673 * 180.02562 * 4 3 2 6 6 C 1.34400 * 108.23041 * 179.97438 * 5 4 3 7 7 N 1.29944 * 110.20576 * 0.02562 * 6 5 4 8 8 C 1.35715 * 108.68966 * 359.97438 * 7 6 5 9 9 C 1.40389 * 134.95110 * 180.29163 * 8 7 6 10 10 N 1.38391 * 120.79046 * 359.95752 * 9 8 7 11 11 C 1.46492 * 120.00103 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47338 * 324.99573 * 11 10 9 13 13 C 1.53007 * 109.47283 * 84.99692 * 11 10 9 14 14 C 1.50700 * 109.47552 * 204.99503 * 11 10 9 15 15 H 1.08000 * 119.99551 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00513 * 180.02562 * 14 11 10 17 17 N 1.31511 * 119.99863 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00003 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46960 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47104 * 119.99849 * 18 16 14 21 21 H 1.48500 * 109.46877 * 239.99980 * 18 16 14 22 22 N 1.31991 * 118.75921 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47176 * 90.00751 * 1 2 3 24 24 H 1.09000 * 109.46994 * 210.00072 * 1 2 3 25 25 H 1.08994 * 109.47683 * 330.00511 * 1 2 3 26 26 H 1.07995 * 124.89420 * 179.97438 * 6 5 4 27 27 H 0.96998 * 119.99662 * 359.97438 * 10 9 8 28 28 H 1.09003 * 109.46849 * 300.00007 * 13 11 10 29 29 H 1.09000 * 109.47031 * 59.99693 * 13 11 10 30 30 H 1.08997 * 109.47313 * 180.02562 * 13 11 10 31 31 H 0.96999 * 120.00363 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1406 1.1546 0.0000 4 6 3.4674 1.1994 0.0005 5 8 4.3843 2.1855 0.0011 6 6 5.6055 1.6241 0.0020 7 7 5.5039 0.3287 0.0015 8 6 4.1883 -0.0044 0.0008 9 6 3.4706 -1.2110 0.0050 10 7 4.1302 -2.4276 0.0108 11 6 3.3640 -3.6762 0.0158 12 1 2.4561 -3.5430 0.6041 13 6 2.9910 -4.0514 -1.4198 14 6 4.1984 -4.7752 0.6216 15 1 5.1992 -4.5645 0.9685 16 6 3.6842 -6.0497 0.7328 17 7 2.4653 -6.3061 0.3107 18 14 4.7183 -7.4118 1.4843 19 1 6.0429 -6.8679 1.8776 20 1 4.0289 -7.9526 2.6833 21 1 4.9054 -8.4978 0.4889 22 7 2.1421 -1.1571 -0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 6.5368 2.1709 0.0022 27 1 5.0998 -2.4535 0.0116 28 1 2.3874 -3.2565 -1.8580 29 1 3.8989 -4.1845 -2.0082 30 1 2.4205 -4.9802 -1.4161 31 1 2.1034 -7.2026 0.3893 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260034510.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:33 Heat of formation + Delta-G solvation = 67.179614 kcal Electronic energy + Delta-G solvation = -17631.793142 eV Core-core repulsion = 14722.341484 eV Total energy + Delta-G solvation = -2909.451658 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.18437 -39.75203 -36.52852 -34.68112 -33.24438 -32.14347 -31.11281 -28.81477 -27.47312 -25.36724 -24.12410 -22.73296 -21.77672 -20.60478 -18.80238 -18.11307 -16.99631 -16.85606 -16.07800 -15.13352 -14.83464 -14.43802 -14.27444 -13.50902 -13.29108 -12.90688 -12.57175 -12.18811 -11.89212 -11.65924 -11.39853 -11.23070 -11.11942 -10.86141 -10.50641 -10.34060 -10.30405 -10.06117 -9.22595 -9.01366 -8.80668 -8.55762 -7.34481 -6.21924 -4.31421 0.92819 1.58963 2.26889 2.59526 3.19270 3.27342 3.30502 3.64263 4.03630 4.09161 4.27252 4.39748 4.52777 5.03095 5.11566 5.27475 5.63395 5.74862 5.88902 5.99915 6.20922 6.50893 6.68901 6.89391 6.98143 7.10126 7.27467 7.54206 7.63245 7.71975 7.87873 8.06068 8.29041 8.60482 8.80356 9.35525 10.84016 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.006278 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.016675 B = 4458.768091 C = 5191.001419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.399 3.601 3 N -0.566 5.566 4 C 0.291 3.709 5 O -0.208 6.208 6 C 0.184 3.816 7 N -0.441 5.441 8 C -0.165 4.165 9 C 0.514 3.486 10 N -0.650 5.650 11 C 0.262 3.738 12 H 0.061 0.939 13 C -0.146 4.146 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.069 3.931 17 N -0.881 5.881 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 N -0.571 5.571 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.258 0.742 27 H 0.410 0.590 28 H 0.017 0.983 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 11.841 -1.134 11.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.130 3.870 3 N -0.300 5.300 4 C 0.108 3.892 5 O -0.094 6.094 6 C -0.049 4.049 7 N -0.168 5.168 8 C -0.289 4.289 9 C 0.259 3.741 10 N -0.271 5.271 11 C 0.161 3.839 12 H 0.078 0.922 13 C -0.205 4.205 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.207 1.207 22 N -0.302 5.302 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.273 0.727 27 H 0.246 0.754 28 H 0.036 0.964 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.458 11.020 -1.148 11.089 hybrid contribution 1.561 -0.184 0.342 1.609 sum 2.019 10.836 -0.806 11.052 Atomic orbital electron populations 1.20559 0.84880 1.04280 1.04043 1.22929 0.97359 0.80773 0.85932 1.67038 1.03734 1.31109 1.28135 1.20066 0.89588 0.84445 0.95149 1.84357 1.15900 1.34924 1.74237 1.28056 0.86947 0.88382 1.01489 1.70217 1.17938 1.12988 1.15648 1.20538 0.90869 0.96243 1.21207 1.18031 0.87316 0.84500 0.84218 1.45877 1.09759 1.03439 1.68053 1.19054 0.92526 0.77713 0.94577 0.92169 1.22091 0.99477 1.02037 0.96856 1.21232 1.01190 0.93685 1.41639 0.91924 1.24846 0.95132 0.98438 0.94999 1.69893 1.14810 1.21516 1.45641 0.86362 0.80232 0.81463 0.78918 1.19694 1.20741 1.20746 1.68152 1.05887 1.28890 1.27294 0.89368 0.88911 0.89635 0.72674 0.75379 0.96356 0.95494 0.88728 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.30 36.01 0.37 -0.64 16 2 C 0.40 7.09 7.63 -157.11 -1.20 5.89 16 3 N -0.57 -10.38 10.34 -10.73 -0.11 -10.49 16 4 C 0.29 5.38 8.66 -16.37 -0.14 5.24 16 5 O -0.21 -3.21 10.76 4.49 0.05 -3.16 16 6 C 0.18 2.32 13.13 51.96 0.68 3.00 16 7 N -0.44 -7.39 11.33 -12.37 -0.14 -7.53 16 8 C -0.17 -3.18 7.18 -84.56 -0.61 -3.79 16 9 C 0.51 10.76 7.52 -154.66 -1.16 9.59 16 10 N -0.65 -14.12 5.20 -54.74 -0.28 -14.41 16 11 C 0.26 6.44 2.59 -69.08 -0.18 6.27 16 12 H 0.06 1.64 7.58 -51.93 -0.39 1.24 16 13 C -0.15 -3.49 9.27 37.16 0.34 -3.15 16 14 C -0.54 -14.11 8.73 -34.44 -0.30 -14.42 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 17 N -0.88 -23.95 11.32 55.43 0.63 -23.32 16 18 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 22 N -0.57 -11.68 9.25 -9.79 -0.09 -11.77 16 23 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.26 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.41 8.45 8.56 -40.82 -0.35 8.10 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 31 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -30.48 276.40 -6.23 -36.71 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.14 Total: 4.70 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -2.29 Total: 9.73 kcal Atomic # 7 Polarization: -67.52 SS G_CDS: 0.00 Total: -67.52 kcal Atomic # 8 Polarization: -3.21 SS G_CDS: 0.05 Total: -3.16 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.48 -6.23 -36.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034510.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.894 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds