Wall clock time and date at job start Mon Mar 30 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31696 * 118.75467 * 2 1 4 4 C 1.32762 * 120.69231 * 179.97438 * 3 2 1 5 5 O 1.34649 * 134.85673 * 180.02562 * 4 3 2 6 6 C 1.34400 * 108.23041 * 179.97438 * 5 4 3 7 7 N 1.29944 * 110.20576 * 0.02562 * 6 5 4 8 8 C 1.35715 * 108.68966 * 359.97438 * 7 6 5 9 9 C 1.40389 * 134.95110 * 180.29163 * 8 7 6 10 10 N 1.38391 * 120.79046 * 359.95752 * 9 8 7 11 11 C 1.46492 * 120.00103 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47338 * 324.99573 * 11 10 9 13 13 C 1.53007 * 109.47283 * 84.99692 * 11 10 9 14 14 C 1.50700 * 109.47552 * 204.99503 * 11 10 9 15 15 H 1.08000 * 119.99551 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00513 * 180.02562 * 14 11 10 17 17 N 1.31511 * 119.99863 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00003 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.46960 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47104 * 119.99849 * 18 16 14 21 21 H 1.48500 * 109.46877 * 239.99980 * 18 16 14 22 22 N 1.31991 * 118.75921 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47176 * 90.00751 * 1 2 3 24 24 H 1.09000 * 109.46994 * 210.00072 * 1 2 3 25 25 H 1.08994 * 109.47683 * 330.00511 * 1 2 3 26 26 H 1.07995 * 124.89420 * 179.97438 * 6 5 4 27 27 H 0.96998 * 119.99662 * 359.97438 * 10 9 8 28 28 H 1.09003 * 109.46849 * 300.00007 * 13 11 10 29 29 H 1.09000 * 109.47031 * 59.99693 * 13 11 10 30 30 H 1.08997 * 109.47313 * 180.02562 * 13 11 10 31 31 H 0.96999 * 120.00363 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1406 1.1546 0.0000 4 6 3.4674 1.1994 0.0005 5 8 4.3843 2.1855 0.0011 6 6 5.6055 1.6241 0.0020 7 7 5.5039 0.3287 0.0015 8 6 4.1883 -0.0044 0.0008 9 6 3.4706 -1.2110 0.0050 10 7 4.1302 -2.4276 0.0108 11 6 3.3640 -3.6762 0.0158 12 1 2.4561 -3.5430 0.6041 13 6 2.9910 -4.0514 -1.4198 14 6 4.1984 -4.7752 0.6216 15 1 5.1992 -4.5645 0.9685 16 6 3.6842 -6.0497 0.7328 17 7 2.4653 -6.3061 0.3107 18 14 4.7183 -7.4118 1.4843 19 1 6.0429 -6.8679 1.8776 20 1 4.0289 -7.9526 2.6833 21 1 4.9054 -8.4978 0.4889 22 7 2.1421 -1.1571 -0.0005 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5137 26 1 6.5368 2.1709 0.0022 27 1 5.0998 -2.4535 0.0116 28 1 2.3874 -3.2565 -1.8580 29 1 3.8989 -4.1845 -2.0082 30 1 2.4205 -4.9802 -1.4161 31 1 2.1034 -7.2026 0.3893 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034510.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:33 Heat of formation + Delta-G solvation = 42.979864 kcal Electronic energy + Delta-G solvation = -17632.842522 eV Core-core repulsion = 14722.341484 eV Total energy + Delta-G solvation = -2910.501038 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.47138 -41.16157 -38.17628 -36.07149 -34.98235 -33.59754 -32.63965 -30.48125 -28.75349 -27.37111 -25.58807 -23.99852 -23.24423 -22.33072 -20.19836 -19.47809 -18.70491 -18.16011 -17.75744 -16.93156 -16.06396 -15.85852 -15.77921 -15.13133 -14.59098 -14.50718 -14.33609 -13.59436 -13.17956 -13.02256 -12.94837 -12.86702 -12.76899 -12.67724 -12.33803 -12.15780 -11.75204 -11.65592 -11.11710 -10.66346 -10.45813 -10.23585 -8.89285 -8.21493 -6.38261 -0.38633 0.10374 1.03153 1.39373 1.41646 1.43410 1.54614 2.08767 2.41465 2.65941 2.83618 3.01941 3.09192 3.36671 3.62803 4.03739 4.34380 4.70794 4.77653 4.78265 4.89530 4.95676 5.04501 5.12020 5.29763 5.40813 5.55760 5.64790 5.78108 6.01016 6.20581 6.38263 6.59105 6.75739 7.20563 7.33578 8.84489 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028564 B = 0.006278 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.016675 B = 4458.768091 C = 5191.001419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.385 3.615 3 N -0.564 5.564 4 C 0.274 3.726 5 O -0.205 6.205 6 C 0.231 3.769 7 N -0.481 5.481 8 C -0.174 4.174 9 C 0.494 3.506 10 N -0.661 5.661 11 C 0.276 3.724 12 H 0.027 0.973 13 C -0.131 4.131 14 C -0.557 4.557 15 H 0.062 0.938 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.968 3.032 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.276 1.276 22 N -0.595 5.595 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.323 0.677 27 H 0.412 0.588 28 H 0.021 0.979 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 13.311 -0.986 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.117 3.883 3 N -0.298 5.298 4 C 0.089 3.911 5 O -0.091 6.091 6 C -0.001 4.001 7 N -0.208 5.208 8 C -0.296 4.296 9 C 0.241 3.759 10 N -0.285 5.285 11 C 0.174 3.826 12 H 0.044 0.956 13 C -0.190 4.190 14 C -0.595 4.595 15 H 0.081 0.919 16 C -0.177 4.177 17 N -0.546 5.546 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.201 1.201 22 N -0.326 5.326 23 H 0.125 0.875 24 H 0.111 0.889 25 H 0.126 0.874 26 H 0.338 0.662 27 H 0.249 0.751 28 H 0.040 0.960 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.581 12.534 -1.004 12.673 hybrid contribution 1.263 -0.412 0.293 1.360 sum 2.844 12.122 -0.711 12.471 Atomic orbital electron populations 1.20736 0.81673 1.05368 1.05545 1.23804 0.99113 0.79992 0.85347 1.67148 1.03922 1.31158 1.27549 1.20338 0.90010 0.84985 0.95767 1.84424 1.16308 1.34286 1.74128 1.29656 0.87538 0.87548 0.95379 1.70257 1.16604 1.15098 1.18883 1.20560 0.92229 0.95729 1.21051 1.18238 0.87906 0.84756 0.84974 1.45480 1.09488 1.02970 1.70584 1.18600 0.91365 0.78736 0.93901 0.95563 1.21893 0.99146 1.01006 0.96912 1.21521 1.01408 0.94540 1.41998 0.91940 1.25646 0.96182 1.00577 0.95308 1.70005 1.16134 1.22122 1.46346 0.85359 0.78730 0.78561 0.78076 1.19216 1.20491 1.20145 1.68175 1.06186 1.30527 1.27741 0.87475 0.88857 0.87400 0.66241 0.75120 0.95961 0.95313 0.90785 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.30 71.24 0.73 -1.11 16 2 C 0.39 13.61 7.63 138.72 1.06 14.67 16 3 N -0.56 -20.20 10.34 -301.02 -3.11 -23.31 16 4 C 0.27 9.76 8.66 85.06 0.74 10.49 16 5 O -0.20 -5.71 10.76 -6.83 -0.07 -5.78 16 6 C 0.23 4.92 13.13 130.52 1.71 6.63 16 7 N -0.48 -15.26 11.33 -307.77 -3.49 -18.74 16 8 C -0.17 -6.64 7.18 39.57 0.28 -6.35 16 9 C 0.49 21.12 7.52 133.41 1.00 22.12 16 10 N -0.66 -29.60 5.20 -327.11 -1.70 -31.31 16 11 C 0.28 14.05 2.59 44.25 0.11 14.17 16 12 H 0.03 1.51 7.58 -2.39 -0.02 1.49 16 13 C -0.13 -6.45 9.27 71.98 0.67 -5.78 16 14 C -0.56 -29.71 8.73 25.60 0.22 -29.49 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.02 1.27 5.30 84.66 0.45 1.72 16 17 N -0.91 -50.27 11.32 21.45 0.24 -50.03 16 18 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 22 N -0.59 -24.87 9.25 -184.87 -1.71 -26.58 16 23 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.32 1.81 8.06 -2.91 -0.02 1.78 16 27 H 0.41 17.49 8.56 -92.71 -0.79 16.70 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 31 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -67.78 276.40 -0.45 -68.23 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.38 Total: 16.50 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 6.99 Total: 27.08 kcal Atomic # 7 Polarization: -140.20 SS G_CDS: -9.77 Total: -149.97 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.07 Total: -5.78 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -67.78 -0.45 -68.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034510.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.212 kcal (2) G-P(sol) polarization free energy of solvation -67.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds