Wall clock time and date at job start Mon Mar 30 2020 21:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31694 * 118.75774 * 2 1 4 4 C 1.32759 * 120.69305 * 179.97438 * 3 2 1 5 5 O 1.34640 * 134.86245 * 180.02562 * 4 3 2 6 6 C 1.34393 * 108.24216 * 179.97438 * 5 4 3 7 7 N 1.29960 * 110.20141 * 0.02562 * 6 5 4 8 8 C 1.35718 * 108.68448 * 359.97438 * 7 6 5 9 9 C 1.40390 * 134.94764 * 179.97438 * 8 7 6 10 10 N 1.38395 * 120.78932 * 0.02562 * 9 8 7 11 11 C 1.46499 * 119.99931 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.47230 * 34.99574 * 11 10 9 13 13 C 1.53001 * 109.47277 * 275.00034 * 11 10 9 14 14 C 1.50696 * 109.47447 * 154.99894 * 11 10 9 15 15 H 1.08000 * 119.99925 * 0.02562 * 14 11 10 16 16 C 1.37873 * 120.00616 * 180.02562 * 14 11 10 17 17 N 1.31521 * 119.99448 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00491 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.46983 * 59.99694 * 18 16 14 20 20 H 1.48498 * 109.47202 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47313 * 300.00006 * 18 16 14 22 22 N 1.32000 * 118.75597 * 180.30461 * 2 1 3 23 23 H 1.08993 * 109.47657 * 89.99284 * 1 2 3 24 24 H 1.08997 * 109.47066 * 209.99752 * 1 2 3 25 25 H 1.08998 * 109.47150 * 329.98866 * 1 2 3 26 26 H 1.07997 * 124.90442 * 179.97438 * 6 5 4 27 27 H 0.96999 * 120.00085 * 359.97438 * 10 9 8 28 28 H 1.09005 * 109.47307 * 59.99945 * 13 11 10 29 29 H 1.09000 * 109.47576 * 179.97438 * 13 11 10 30 30 H 1.08995 * 109.46954 * 300.00156 * 13 11 10 31 31 H 0.97001 * 119.99446 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1406 1.1545 0.0000 4 6 3.4674 1.1993 0.0005 5 8 4.3844 2.1852 0.0011 6 6 5.6055 1.6239 0.0020 7 7 5.5039 0.3283 0.0015 8 6 4.1882 -0.0046 0.0008 9 6 3.4705 -1.2112 -0.0005 10 7 4.1301 -2.4278 -0.0007 11 6 3.3639 -3.6765 -0.0014 12 1 2.4564 -3.5456 -0.5910 13 6 2.9894 -4.0459 1.4354 14 6 4.1987 -4.7779 -0.6020 15 1 5.2002 -4.5689 -0.9481 16 6 3.6842 -6.0525 -0.7096 17 7 2.4645 -6.3069 -0.2885 18 14 4.7194 -7.4180 -1.4534 19 1 5.9549 -7.5965 -0.6491 20 1 3.9426 -8.6836 -1.4542 21 1 5.0838 -7.0594 -2.8476 22 7 2.1420 -1.1572 -0.0062 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5140 26 1 6.5369 2.1706 0.0022 27 1 5.0997 -2.4539 -0.0004 28 1 2.3855 -3.2492 1.8698 29 1 2.4189 -4.9747 1.4349 30 1 3.8967 -4.1767 2.0250 31 1 2.1027 -7.2038 -0.3639 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260034511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:36 Heat of formation + Delta-G solvation = 43.078912 kcal Electronic energy + Delta-G solvation = -17632.628886 eV Core-core repulsion = 14722.132143 eV Total energy + Delta-G solvation = -2910.496743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.47166 -41.16135 -38.17479 -36.07039 -34.98014 -33.59722 -32.63930 -30.48012 -28.75394 -27.36712 -25.58826 -23.99845 -23.24295 -22.33045 -20.19843 -19.47712 -18.70148 -18.16037 -17.75314 -16.92685 -16.06580 -15.85803 -15.78646 -15.13111 -14.59250 -14.51127 -14.31947 -13.58645 -13.17723 -13.02424 -12.94135 -12.86299 -12.77200 -12.68603 -12.33290 -12.16219 -11.75413 -11.65482 -11.13534 -10.65541 -10.45510 -10.23575 -8.89235 -8.21004 -6.37993 -0.38659 0.10367 1.03086 1.39329 1.43338 1.44326 1.52347 2.08717 2.41752 2.65926 2.83634 3.01931 3.09512 3.36652 3.62813 4.03760 4.34400 4.70803 4.77532 4.78293 4.89479 4.95748 5.04481 5.12037 5.29590 5.40854 5.55582 5.64779 5.78137 6.01099 6.20678 6.38229 6.58991 6.75636 7.20559 7.33713 8.84559 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028576 B = 0.006278 C = 0.005392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.617151 B = 4459.144463 C = 5191.490669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.385 3.615 3 N -0.564 5.564 4 C 0.274 3.726 5 O -0.205 6.205 6 C 0.231 3.769 7 N -0.481 5.481 8 C -0.174 4.174 9 C 0.494 3.506 10 N -0.661 5.661 11 C 0.277 3.723 12 H 0.027 0.973 13 C -0.131 4.131 14 C -0.559 4.559 15 H 0.063 0.937 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.968 3.032 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.273 1.273 22 N -0.595 5.595 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.323 0.677 27 H 0.412 0.588 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.176 13.290 0.933 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.117 3.883 3 N -0.298 5.298 4 C 0.089 3.911 5 O -0.091 6.091 6 C -0.001 4.001 7 N -0.208 5.208 8 C -0.296 4.296 9 C 0.241 3.759 10 N -0.285 5.285 11 C 0.174 3.826 12 H 0.044 0.956 13 C -0.190 4.190 14 C -0.597 4.597 15 H 0.081 0.919 16 C -0.177 4.177 17 N -0.546 5.546 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.199 1.199 22 N -0.326 5.326 23 H 0.124 0.876 24 H 0.112 0.888 25 H 0.127 0.873 26 H 0.338 0.662 27 H 0.249 0.751 28 H 0.040 0.960 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.574 12.507 0.945 12.642 hybrid contribution 1.282 -0.399 -0.318 1.380 sum 2.856 12.109 0.627 12.457 Atomic orbital electron populations 1.20735 0.81673 1.05428 1.05488 1.23805 0.99112 0.79990 0.85349 1.67144 1.03922 1.31160 1.27547 1.20337 0.90009 0.84985 0.95775 1.84418 1.16306 1.34297 1.74119 1.29661 0.87536 0.87549 0.95380 1.70266 1.16593 1.15095 1.18887 1.20563 0.92232 0.95727 1.21045 1.18238 0.87907 0.84759 0.84974 1.45483 1.09488 1.02967 1.70589 1.18592 0.91361 0.78716 0.93887 0.95559 1.21893 0.99140 1.00997 0.96924 1.21466 1.01380 0.94496 1.42352 0.91923 1.25644 0.96186 1.00583 0.95260 1.69999 1.16083 1.22224 1.46251 0.85467 0.78625 0.77825 0.78852 1.19348 1.20520 1.19866 1.68175 1.06195 1.30527 1.27740 0.87637 0.88751 0.87343 0.66235 0.75118 0.95973 0.90777 0.95320 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.30 71.24 0.73 -1.11 16 2 C 0.39 13.62 7.63 138.72 1.06 14.68 16 3 N -0.56 -20.20 10.34 -301.02 -3.11 -23.32 16 4 C 0.27 9.76 8.66 85.06 0.74 10.49 16 5 O -0.20 -5.71 10.75 -6.68 -0.07 -5.78 16 6 C 0.23 4.92 13.13 130.52 1.71 6.63 16 7 N -0.48 -15.25 11.33 -307.75 -3.49 -18.74 16 8 C -0.17 -6.64 7.18 39.57 0.28 -6.35 16 9 C 0.49 21.13 7.52 133.41 1.00 22.13 16 10 N -0.66 -29.61 5.20 -327.10 -1.70 -31.31 16 11 C 0.28 14.08 2.59 44.24 0.11 14.20 16 12 H 0.03 1.51 7.57 -2.38 -0.02 1.49 16 13 C -0.13 -6.45 9.27 71.98 0.67 -5.78 16 14 C -0.56 -29.84 8.73 25.60 0.22 -29.62 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.02 1.30 5.30 84.65 0.45 1.75 16 17 N -0.91 -50.28 11.32 21.45 0.24 -50.03 16 18 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 N -0.59 -24.89 9.24 -184.87 -1.71 -26.60 16 23 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.32 1.80 8.06 -2.91 -0.02 1.78 16 27 H 0.41 17.48 8.56 -92.71 -0.79 16.69 16 28 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 3.95 6.07 -2.39 -0.01 3.94 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -67.73 276.40 -0.45 -68.17 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.38 Total: 16.68 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 6.99 Total: 27.02 kcal Atomic # 7 Polarization: -140.24 SS G_CDS: -9.77 Total: -150.00 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.07 Total: -5.78 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -67.73 -0.45 -68.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260034511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.254 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds