Wall clock time and date at job start Mon Mar 30 2020 21:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38752 * 120.09285 * 0.02562 * 3 2 1 5 5 C 1.38011 * 119.87700 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.29127 * 359.97438 * 5 4 3 7 7 C 1.38264 * 119.93341 * 0.03031 * 6 5 4 8 8 C 1.38409 * 119.90773 * 359.73571 * 7 6 5 9 9 C 1.51381 * 109.75502 * 179.97438 * 7 6 5 10 10 C 1.54347 * 105.17056 * 17.20497 * 9 7 6 11 11 H 1.08994 * 110.82337 * 215.40243 * 10 9 7 12 12 C 1.52999 * 110.82111 * 92.05060 * 10 9 7 13 13 C 1.51391 * 130.32662 * 180.02562 * 6 5 4 14 14 O 1.42898 * 110.29938 * 43.88370 * 13 6 5 15 15 C 1.50698 * 110.30344 * 281.73245 * 13 6 5 16 16 H 1.07996 * 120.00375 * 241.45039 * 15 13 6 17 17 C 1.37878 * 120.00054 * 61.45200 * 15 13 6 18 18 N 1.31521 * 119.99744 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 120.00336 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47420 * 89.99695 * 19 17 15 21 21 H 1.48499 * 109.47498 * 210.00008 * 19 17 15 22 22 H 1.48504 * 109.47109 * 330.00355 * 19 17 15 23 23 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 24 24 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 25 25 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.06264 * 359.97438 * 4 3 2 27 27 H 1.07992 * 119.84987 * 180.02562 * 5 4 3 28 28 H 1.08005 * 119.91344 * 180.25485 * 8 7 6 29 29 H 1.08999 * 110.30523 * 136.12513 * 9 7 6 30 30 H 1.08998 * 110.30696 * 258.28614 * 9 7 6 31 31 H 1.08997 * 109.47163 * 61.45545 * 12 10 9 32 32 H 1.09000 * 109.47266 * 181.45644 * 12 10 9 33 33 H 1.08997 * 109.46991 * 301.45463 * 12 10 9 34 34 H 0.96703 * 114.00289 * 298.54357 * 14 13 6 35 35 H 0.97008 * 119.99700 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2921 2.3758 0.0005 5 6 1.9232 3.6032 0.0011 6 6 3.3066 3.6776 0.0016 7 6 4.0599 2.5182 0.0010 8 6 3.4298 1.2858 0.0053 9 6 5.5334 2.8653 0.0011 10 6 5.6002 4.3428 0.4425 11 1 6.4046 4.8657 -0.0747 12 6 5.7717 4.4501 1.9591 13 6 4.2229 4.8827 0.0028 14 8 3.7537 5.8613 0.9323 15 6 4.3111 5.4738 -1.3806 16 1 5.2619 5.5135 -1.8914 17 6 3.1780 5.9642 -1.9943 18 7 2.0203 5.9164 -1.3722 19 14 3.2874 6.6976 -3.7088 20 1 3.0713 5.6303 -4.7185 21 1 2.2473 7.7458 -3.8661 22 1 4.6307 7.2997 -3.9049 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2135 2.3221 0.0005 27 1 1.3360 4.5095 0.0019 28 1 4.0182 0.3801 0.0090 29 1 6.0706 2.2344 0.7093 30 1 5.9491 2.7506 -0.9999 31 1 6.7077 3.9753 2.2534 32 1 5.7903 5.5006 2.2492 33 1 4.9394 3.9509 2.4551 34 1 2.8729 6.2054 0.7302 35 1 1.2230 6.2611 -1.8041 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260118765.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:11 Heat of formation + Delta-G solvation = -65.127264 kcal Electronic energy + Delta-G solvation = -18731.473869 eV Core-core repulsion = 15887.532546 eV Total energy + Delta-G solvation = -2843.941323 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74136 -38.26205 -35.19319 -33.63589 -32.16546 -30.03461 -29.17402 -27.32105 -26.28827 -25.63391 -23.17744 -21.28992 -19.99293 -18.82712 -17.02515 -16.86377 -15.68053 -15.53154 -15.25398 -14.71131 -14.01206 -13.70290 -13.51646 -12.82834 -12.61487 -12.17343 -12.00645 -11.95295 -11.77904 -11.46560 -11.28560 -11.15183 -10.92962 -10.67903 -10.46278 -10.43972 -10.02568 -9.90155 -9.69153 -9.27095 -8.64750 -8.22197 -7.83259 -7.07843 -6.19725 -4.34031 2.28673 2.48435 3.20666 3.27512 3.30975 3.78384 4.26786 4.76206 5.03424 5.31626 5.42416 5.45496 5.61872 5.65260 5.76747 5.85298 5.96869 6.07811 6.25647 6.28604 6.35064 6.46037 6.61136 6.64184 6.76430 6.94367 7.01612 7.10802 7.29097 7.40277 7.48126 7.65666 7.79223 7.99257 8.08485 8.18924 8.68739 9.33899 9.47141 10.78151 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.009880 C = 0.007614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.672899 B = 2833.287152 C = 3676.457640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.095 3.905 4 C -0.225 4.225 5 C -0.038 4.038 6 C -0.087 4.087 7 C -0.078 4.078 8 C -0.156 4.156 9 C -0.066 4.066 10 C -0.079 4.079 11 H 0.075 0.925 12 C -0.124 4.124 13 C 0.290 3.710 14 O -0.583 6.583 15 C -0.523 4.523 16 H 0.064 0.936 17 C 0.071 3.929 18 N -0.891 5.891 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.111 0.889 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.377 0.623 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -6.329 2.754 6.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C 0.051 3.949 4 C -0.243 4.243 5 C -0.057 4.057 6 C -0.088 4.088 7 C -0.078 4.078 8 C -0.175 4.175 9 C -0.103 4.103 10 C -0.097 4.097 11 H 0.094 0.906 12 C -0.181 4.181 13 C 0.251 3.749 14 O -0.391 6.391 15 C -0.561 4.561 16 H 0.082 0.918 17 C -0.131 4.131 18 N -0.531 5.531 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.130 0.870 27 H 0.168 0.832 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.227 0.773 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.493 -6.569 3.003 7.240 hybrid contribution -1.054 0.435 -1.533 1.911 sum -1.547 -6.134 1.470 6.495 Atomic orbital electron populations 1.22871 0.79619 1.02619 1.01083 1.85948 1.20388 1.28001 1.89977 1.18677 0.92015 0.83508 1.00675 1.21124 0.98803 0.92793 1.11618 1.21136 0.94642 0.97006 0.92878 1.21492 0.93852 0.96749 0.96751 1.20271 0.96195 0.92476 0.98880 1.19469 0.90847 0.96929 1.10272 1.20997 0.92045 0.96389 1.00901 1.21838 0.98310 0.93912 0.95643 0.90623 1.21495 0.99341 1.01683 0.95621 1.18176 0.86412 0.82695 0.87641 1.86169 1.38950 1.60090 1.53880 1.21677 0.94940 1.38677 1.00788 0.91764 1.24999 0.95023 0.94856 0.98230 1.69541 0.99201 1.45999 1.38350 0.86432 0.78041 0.78828 0.83780 1.20615 1.21004 1.19711 0.93174 0.93189 0.89237 0.87003 0.83151 0.87077 0.91989 0.90738 0.94527 0.92254 0.93230 0.77339 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.33 -5.90 10.50 -19.44 -0.20 -6.10 16 3 C 0.09 1.93 6.68 -39.26 -0.26 1.67 16 4 C -0.22 -4.64 9.04 -39.47 -0.36 -4.99 16 5 C -0.04 -0.89 8.68 -39.55 -0.34 -1.23 16 6 C -0.09 -2.09 4.81 -104.16 -0.50 -2.59 16 7 C -0.08 -1.71 6.13 -104.21 -0.64 -2.35 16 8 C -0.16 -3.23 9.98 -39.39 -0.39 -3.62 16 9 C -0.07 -1.30 6.30 -26.84 -0.17 -1.46 16 10 C -0.08 -1.66 3.13 -89.22 -0.28 -1.94 16 11 H 0.08 1.57 7.73 -51.93 -0.40 1.17 16 12 C -0.12 -2.35 8.46 37.16 0.31 -2.04 16 13 C 0.29 7.09 0.75 -91.89 -0.07 7.02 16 14 O -0.58 -14.65 11.68 -35.23 -0.41 -15.06 16 15 C -0.52 -13.77 8.24 -34.44 -0.28 -14.05 16 16 H 0.06 1.68 7.57 -52.49 -0.40 1.28 16 17 C 0.07 1.83 5.25 -17.82 -0.09 1.74 16 18 N -0.89 -22.68 8.12 55.43 0.45 -22.23 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 24 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.11 2.01 6.31 -52.49 -0.33 1.67 16 27 H 0.15 3.60 6.01 -52.49 -0.32 3.28 16 28 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.15 7.74 -51.93 -0.40 0.75 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.38 9.57 7.23 45.56 0.33 9.90 16 35 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 283.18 15.07 4.27 4.27 Total: -1.00 -27.71 283.18 -6.98 -34.69 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -3.97 Total: 11.34 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.08 Total: -22.41 kcal Atomic # 7 Polarization: -22.68 SS G_CDS: 0.45 Total: -22.23 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.62 Total: -21.16 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.71 -6.98 -34.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260118765.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.437 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds