Wall clock time and date at job start Mon Mar 30 2020 21:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46502 * 119.99940 * 2 1 4 4 C 1.50695 * 109.47557 * 270.00085 * 3 2 1 5 5 H 1.08006 * 119.99514 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00318 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99777 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00048 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47083 * 89.99434 * 8 6 4 10 10 H 1.48496 * 109.47388 * 209.99417 * 8 6 4 11 11 H 1.48506 * 109.47229 * 329.99910 * 8 6 4 12 12 C 1.38429 * 120.00186 * 180.02562 * 2 1 3 13 13 N 1.32875 * 118.91425 * 180.02562 * 12 2 1 14 14 C 1.31932 * 121.32675 * 179.97438 * 13 12 2 15 15 C 1.40051 * 118.75286 * 0.02562 * 14 13 12 16 16 N 1.35123 * 134.15683 * 179.97438 * 15 14 13 17 17 N 1.28744 * 110.01916 * 180.02562 * 16 15 14 18 18 N 1.40281 * 109.48858 * 0.02562 * 17 16 15 19 19 C 1.46504 * 126.61785 * 179.97438 * 18 17 16 20 20 C 1.36757 * 106.76981 * 359.97438 * 18 17 16 21 21 N 1.32226 * 118.91386 * 0.02562 * 12 2 1 22 22 H 1.08998 * 109.47221 * 269.99732 * 1 2 3 23 23 H 1.09004 * 109.47291 * 30.00139 * 1 2 3 24 24 H 1.09001 * 109.47048 * 149.99885 * 1 2 3 25 25 H 1.08996 * 109.46832 * 30.00038 * 3 2 1 26 26 H 1.09000 * 109.47125 * 149.99986 * 3 2 1 27 27 H 0.97005 * 119.99684 * 180.02562 * 7 6 4 28 28 H 1.07996 * 120.62091 * 180.02562 * 14 13 12 29 29 H 1.08996 * 109.46775 * 90.02382 * 19 18 17 30 30 H 1.08996 * 109.46752 * 210.02011 * 19 18 17 31 31 H 1.08997 * 109.46826 * 330.02330 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4207 5 1 2.0973 1.0963 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5541 3.6176 -0.6730 8 14 3.4388 3.4165 -3.4338 9 1 2.3091 4.2596 -3.9009 10 1 4.6993 4.1991 -3.4961 11 1 3.5558 2.2192 -4.3045 12 6 2.1571 -1.1988 -0.0005 13 7 3.4856 -1.1736 0.0000 14 6 4.1928 -2.2873 0.0000 15 6 3.5174 -3.5142 -0.0011 16 7 3.9127 -4.8064 -0.0018 17 7 2.8849 -5.5817 -0.0033 18 7 1.7149 -4.8078 -0.0042 19 6 0.3373 -5.3065 -0.0064 20 6 2.1082 -3.4980 -0.0026 21 7 1.4744 -2.3312 -0.0016 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6083 2.0283 0.5138 26 1 3.1498 1.1384 0.5138 27 1 4.0309 4.4435 -0.8503 28 1 5.2723 -2.2536 0.0009 29 1 -0.0057 -5.4306 1.0207 30 1 -0.3064 -4.5930 -0.5208 31 1 0.2994 -6.2667 -0.5207 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260143407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:13 Heat of formation + Delta-G solvation = 140.607569 kcal Electronic energy + Delta-G solvation = -17567.114975 eV Core-core repulsion = 14693.140142 eV Total energy + Delta-G solvation = -2873.974832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.36368 -40.72990 -37.49586 -35.93721 -34.75121 -33.99215 -31.52318 -29.80876 -28.55792 -27.60158 -25.46806 -25.27843 -22.92366 -22.44178 -19.51959 -19.20605 -18.61826 -18.02724 -17.51925 -16.82409 -16.33773 -15.89369 -15.25450 -14.88370 -14.63266 -14.18453 -14.06633 -13.85084 -13.54892 -13.35877 -13.15646 -13.04923 -12.75918 -12.54990 -12.53825 -12.15806 -11.90375 -11.78044 -10.86002 -10.60005 -10.41389 -10.14377 -8.84013 -8.15082 -6.31404 -0.67025 0.19136 0.80764 1.06865 1.40913 1.42974 1.52424 1.85913 2.41416 2.74211 2.96837 3.00015 3.12997 3.22898 3.45315 3.91815 4.34790 4.36466 4.44731 4.62697 4.65204 4.75720 4.88604 4.89848 5.01651 5.27046 5.32614 5.65547 5.84051 5.94907 6.08312 6.45359 6.73025 6.78772 7.22075 7.38880 8.88188 Molecular weight = 248.11amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.005897 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.412580 B = 4747.040789 C = 5088.425616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.559 5.559 3 C 0.269 3.731 4 C -0.537 4.537 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.598 3.402 13 N -0.565 5.565 14 C 0.305 3.695 15 C -0.200 4.200 16 N -0.186 5.186 17 N -0.026 5.026 18 N -0.391 5.391 19 C 0.097 3.903 20 C 0.339 3.661 21 N -0.599 5.599 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.268 0.732 28 H 0.216 0.784 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 -13.242 1.539 14.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.269 5.269 3 C 0.148 3.852 4 C -0.576 4.576 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.202 1.202 12 C 0.240 3.760 13 N -0.286 5.286 14 C 0.119 3.881 15 C -0.333 4.333 16 N -0.067 5.067 17 N -0.008 5.008 18 N -0.189 5.189 19 C -0.042 4.042 20 C 0.086 3.914 21 N -0.336 5.336 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.233 0.767 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.982 -13.396 1.593 14.757 hybrid contribution 0.087 0.677 -0.790 1.044 sum -5.895 -12.719 0.803 14.042 Atomic orbital electron populations 1.21733 0.76733 1.03398 1.02187 1.46966 1.07173 1.02305 1.70451 1.19060 0.91846 0.77785 0.96471 1.21546 1.36827 1.06551 0.92646 0.93576 1.25624 0.94947 0.96292 1.01110 1.70012 1.38766 1.14733 1.32575 0.85540 0.77961 0.78070 0.79931 1.19559 1.20474 1.20220 1.19262 0.84965 0.85768 0.86038 1.68301 1.07218 1.30735 1.22305 1.23245 1.01857 0.82022 0.80975 1.21286 0.94299 0.94682 1.23068 1.74523 1.21809 1.00226 1.10145 1.81615 0.85217 1.15020 1.18965 1.50087 1.09579 1.00498 1.58736 1.22344 0.73730 1.02661 1.05472 1.19271 0.90776 0.87458 0.93936 1.66753 1.39320 0.94618 1.32887 0.91634 0.90587 0.90242 0.95315 0.95131 0.92334 0.76718 0.88602 0.88386 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.37 10.43 127.77 1.33 4.70 16 2 N -0.56 -23.62 2.96 -740.12 -2.19 -25.81 16 3 C 0.27 13.37 5.16 85.63 0.44 13.82 16 4 C -0.54 -28.94 9.39 25.60 0.24 -28.70 16 5 H 0.05 2.54 7.81 -2.91 -0.02 2.51 16 6 C 0.02 1.09 5.46 84.65 0.46 1.55 16 7 N -0.92 -52.12 13.29 21.45 0.28 -51.83 16 8 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.60 24.76 8.17 261.42 2.14 26.90 16 13 N -0.56 -23.30 9.05 -196.96 -1.78 -25.08 16 14 C 0.30 10.16 11.38 85.12 0.97 11.13 16 15 C -0.20 -6.81 7.33 39.74 0.29 -6.52 16 16 N -0.19 -6.04 12.40 -52.07 -0.65 -6.68 16 17 N -0.03 -0.80 13.72 37.02 0.51 -0.29 16 18 N -0.39 -10.98 4.09 -366.57 -1.50 -12.48 16 19 C 0.10 1.63 11.54 127.77 1.47 3.11 16 20 C 0.34 11.64 8.11 134.15 1.09 12.73 16 21 N -0.60 -22.17 9.11 -195.84 -1.78 -23.95 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.08 2.47 8.07 -2.38 -0.02 2.46 16 24 H 0.08 2.45 7.32 -2.39 -0.02 2.43 16 25 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 26 H 0.03 1.66 7.32 -2.39 -0.02 1.65 16 27 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 28 H 0.22 5.30 8.06 -2.91 -0.02 5.28 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -65.68 279.97 4.51 -61.17 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: 1.15 Total: 1.27 kcal Atomic # 6 Polarization: 30.29 SS G_CDS: 8.44 Total: 38.72 kcal Atomic # 7 Polarization: -139.01 SS G_CDS: -7.11 Total: -146.12 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.68 4.51 -61.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260143407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.781 kcal (2) G-P(sol) polarization free energy of solvation -65.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds