Wall clock time and date at job start Mon Mar 30 2020 21:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99704 * 2 1 4 4 H 1.48492 * 109.47471 * 274.94973 * 3 2 1 5 5 H 1.48498 * 109.47187 * 34.95402 * 3 2 1 6 6 H 1.48502 * 109.46768 * 154.95060 * 3 2 1 7 7 C 1.37873 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00383 * 173.05799 * 7 2 1 9 9 C 1.50696 * 120.00023 * 353.05793 * 7 2 1 10 10 C 1.50699 * 115.55175 * 324.47215 * 9 7 2 11 11 C 1.38263 * 119.99902 * 101.88400 * 10 9 7 12 12 C 1.38207 * 119.99906 * 180.02562 * 11 10 9 13 13 C 1.38257 * 120.00187 * 359.97316 * 12 11 10 14 14 C 1.38212 * 119.99825 * 0.02991 * 13 12 11 15 15 C 1.38211 * 120.00051 * 281.86122 * 10 9 7 16 16 C 1.50701 * 120.00042 * 359.97438 * 15 10 9 17 17 H 1.09004 * 109.47062 * 28.44159 * 16 15 10 18 18 O 1.42900 * 109.47392 * 148.44334 * 16 15 10 19 19 C 1.53000 * 109.46724 * 268.44507 * 16 15 10 20 20 O 1.42898 * 109.47147 * 173.38499 * 19 16 15 21 21 C 1.53006 * 117.51657 * 110.17365 * 9 7 2 22 22 C 1.52996 * 60.00179 * 107.48205 * 21 9 7 23 23 H 0.96994 * 120.00031 * 5.01833 * 1 2 3 24 24 H 1.07999 * 119.99678 * 359.97438 * 11 10 9 25 25 H 1.07998 * 119.99988 * 179.70129 * 12 11 10 26 26 H 1.07996 * 120.00609 * 180.02562 * 13 12 11 27 27 H 1.08001 * 120.00046 * 180.02562 * 14 13 12 28 28 H 0.96697 * 113.99668 * 67.02396 * 18 16 15 29 29 H 1.09001 * 109.46992 * 293.38141 * 19 16 15 30 30 H 1.09000 * 109.47445 * 53.38334 * 19 16 15 31 31 H 0.96700 * 114.00160 * 184.95824 * 20 19 16 32 32 H 1.09004 * 117.49596 * 214.97198 * 21 9 7 33 33 H 1.08999 * 117.49824 * 359.97438 * 21 9 7 34 34 H 1.09000 * 117.49833 * 252.51035 * 22 21 9 35 35 H 1.09007 * 117.52085 * 107.47436 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3920 2.1069 -1.3947 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4123 0.5928 7 6 2.0046 -1.1940 -0.0005 8 1 3.0787 -1.1974 -0.1136 9 6 1.2594 -2.4944 0.1566 10 6 0.0660 -2.4527 1.0758 11 6 -1.2106 -2.3882 0.5487 12 6 -2.3051 -2.3494 1.3917 13 6 -2.1236 -2.3756 2.7621 14 6 -0.8474 -2.4400 3.2890 15 6 0.2475 -2.4793 2.4457 16 6 1.6389 -2.5507 3.0202 17 1 2.3414 -2.0836 2.3299 18 8 1.6731 -1.8632 4.2724 19 6 2.0288 -4.0150 3.2314 20 8 3.3992 -4.0904 3.6295 21 6 1.1804 -3.4156 -1.0625 22 6 2.0779 -3.7866 0.1197 23 1 -0.4850 0.8368 -0.0735 24 1 -1.3524 -2.3673 -0.5217 25 1 -3.3021 -2.2942 0.9801 26 1 -2.9788 -2.3458 3.4209 27 1 -0.7056 -2.4609 4.3594 28 1 1.1537 -2.2881 4.9687 29 1 1.4003 -4.4499 4.0086 30 1 1.8899 -4.5659 2.3012 31 1 3.7369 -4.9931 3.7080 32 1 0.2651 -3.9914 -1.1996 33 1 1.6670 -3.0809 -1.9786 34 1 3.1553 -3.6961 -0.0185 35 1 1.7534 -4.6063 0.7608 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260150910.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:21 Heat of formation + Delta-G solvation = -46.189878 kcal Electronic energy + Delta-G solvation = -18921.369775 eV Core-core repulsion = 16078.249639 eV Total energy + Delta-G solvation = -2843.120136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.32577 -36.94897 -35.96059 -35.16990 -32.16864 -30.84117 -29.53067 -27.50173 -25.68536 -22.86600 -22.25480 -21.45001 -20.06689 -19.13325 -17.42756 -16.67758 -16.16340 -15.37129 -14.97580 -14.62929 -14.12817 -13.94916 -13.51480 -13.17798 -12.93506 -12.42408 -12.41361 -11.85039 -11.62890 -11.18511 -10.97418 -10.93584 -10.63363 -10.47074 -10.34054 -10.15633 -9.65400 -9.52079 -9.35109 -9.21183 -8.81438 -8.27897 -7.82347 -7.54863 -5.99135 -4.13221 2.30659 2.48076 3.28560 3.37949 3.42166 4.37216 4.48995 4.80924 4.91254 5.08436 5.42733 5.50606 5.62984 5.69126 5.69944 5.83001 5.92484 5.99409 6.24914 6.31788 6.37170 6.53544 6.60158 6.74716 6.87008 6.88871 7.03709 7.16615 7.25855 7.37324 7.55678 7.79468 7.85194 7.91280 8.04157 8.23475 8.27908 8.83139 9.47171 10.94572 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016101 B = 0.011523 C = 0.009939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.560562 B = 2429.279992 C = 2816.500623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.065 0.935 9 C 0.080 3.920 10 C 0.043 3.957 11 C -0.053 4.053 12 C -0.134 4.134 13 C -0.146 4.146 14 C -0.126 4.126 15 C -0.120 4.120 16 C 0.151 3.849 17 H 0.137 0.863 18 O -0.551 6.551 19 C 0.042 3.958 20 O -0.563 6.563 21 C -0.203 4.203 22 C -0.210 4.210 23 H 0.262 0.738 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.358 0.642 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.369 0.631 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -7.920 4.540 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.533 4.533 8 H 0.083 0.917 9 C 0.079 3.921 10 C 0.043 3.957 11 C -0.071 4.071 12 C -0.153 4.153 13 C -0.164 4.164 14 C -0.144 4.144 15 C -0.120 4.120 16 C 0.093 3.907 17 H 0.154 0.846 18 O -0.355 6.355 19 C -0.036 4.036 20 O -0.367 6.367 21 C -0.241 4.241 22 C -0.246 4.246 23 H 0.072 0.928 24 H 0.130 0.870 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.203 0.797 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.214 0.786 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.466 -6.701 4.261 8.076 hybrid contribution -0.124 0.025 0.148 0.195 sum -1.589 -6.676 4.410 8.157 Atomic orbital electron populations 1.69973 1.05748 1.26855 1.47192 1.24977 0.94899 0.99157 0.93788 0.86563 0.80335 0.83367 0.77847 1.20756 1.20997 1.19485 1.20422 0.93074 0.88193 1.51586 0.91693 1.17794 0.91918 0.89634 0.92729 1.18935 0.93927 0.91366 0.91498 1.20670 0.91505 0.95842 0.99112 1.20915 0.98102 1.02665 0.93571 1.20686 0.96039 1.04620 0.95101 1.20524 0.92604 1.03274 0.98040 1.19917 0.94247 1.03957 0.93908 1.20898 0.94651 0.89919 0.85267 0.84596 1.86695 1.73766 1.54048 1.20948 1.23274 0.82323 0.98984 0.99017 1.86583 1.26688 1.31702 1.91720 1.23065 0.99934 1.06888 0.94213 1.23139 0.97459 1.00930 1.03119 0.92752 0.86959 0.87791 0.87852 0.87931 0.79673 0.94500 0.91392 0.78565 0.91520 0.90128 0.90125 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.48 10.37 55.43 0.57 -22.91 16 2 C 0.08 2.07 5.30 -17.82 -0.09 1.98 16 3 Si 0.89 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.12 7.92 -34.44 -0.27 -13.39 16 8 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 9 C 0.08 1.87 0.96 -156.81 -0.15 1.72 16 10 C 0.04 0.99 3.63 -104.62 -0.38 0.61 16 11 C -0.05 -1.17 7.54 -39.58 -0.30 -1.47 16 12 C -0.13 -2.63 10.05 -39.59 -0.40 -3.03 16 13 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 14 C -0.13 -2.42 9.33 -39.58 -0.37 -2.79 16 15 C -0.12 -2.55 5.02 -104.62 -0.53 -3.08 16 16 C 0.15 3.11 2.80 -27.88 -0.08 3.04 16 17 H 0.14 3.32 5.97 -51.93 -0.31 3.01 16 18 O -0.55 -11.07 12.97 -38.44 -0.50 -11.57 16 19 C 0.04 0.69 6.32 37.16 0.23 0.93 16 20 O -0.56 -9.17 13.64 -38.44 -0.52 -9.69 16 21 C -0.20 -4.35 9.50 -26.73 -0.25 -4.61 16 22 C -0.21 -4.27 8.39 -26.73 -0.22 -4.50 16 23 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 24 H 0.11 2.53 7.83 -52.49 -0.41 2.12 16 25 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.10 1.66 6.70 -52.49 -0.35 1.31 16 28 H 0.36 5.53 7.61 45.56 0.35 5.87 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.12 4.58 -51.93 -0.24 0.88 16 31 H 0.37 3.95 9.12 45.56 0.42 4.36 16 32 H 0.07 1.34 7.91 -51.93 -0.41 0.92 16 33 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.07 1.33 5.55 -51.93 -0.29 1.04 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -30.11 286.59 -7.26 -37.37 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -2.91 Total: 13.83 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -3.21 Total: -27.68 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.57 Total: -22.91 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.02 Total: -21.26 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.11 -7.26 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260150910.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.820 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds