Wall clock time and date at job start Mon Mar 30 2020 21:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31189 * 119.77082 * 2 1 4 4 C 1.34339 * 120.94348 * 180.25827 * 3 2 1 5 5 N 1.31939 * 131.57033 * 179.81170 * 4 3 2 6 6 N 1.40151 * 107.84067 * 179.71139 * 5 4 3 7 7 C 1.36831 * 126.21104 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00045 * 174.08786 * 7 6 5 9 9 C 1.38663 * 120.00209 * 354.09822 * 7 6 5 10 10 N 1.31531 * 120.00141 * 5.92982 * 9 7 6 11 11 Si 1.86797 * 119.99950 * 185.93805 * 9 7 6 12 12 H 1.48496 * 109.47355 * 94.97795 * 11 9 7 13 13 H 1.48507 * 109.47131 * 214.97688 * 11 9 7 14 14 H 1.48500 * 109.47107 * 334.97137 * 11 9 7 15 15 C 1.34820 * 107.57251 * 359.97438 * 6 5 4 16 16 O 1.21715 * 126.03264 * 179.97438 * 15 6 5 17 17 N 1.34720 * 107.92907 * 0.02562 * 15 6 5 18 18 C 1.37137 * 131.83276 * 180.02562 * 17 15 6 19 19 C 1.50694 * 120.42744 * 0.02562 * 18 17 15 20 20 C 1.35414 * 119.14652 * 179.97438 * 18 17 15 21 21 C 1.50705 * 120.23777 * 180.02562 * 20 18 17 22 22 H 1.09005 * 109.46900 * 270.24717 * 1 2 3 23 23 H 1.09000 * 109.47853 * 30.24604 * 1 2 3 24 24 H 1.09005 * 109.46956 * 150.25219 * 1 2 3 25 25 H 0.97004 * 120.00384 * 180.02562 * 10 9 7 26 26 H 1.09004 * 109.46763 * 90.00754 * 19 18 17 27 27 H 1.09004 * 109.47550 * 210.00423 * 19 18 17 28 28 H 1.08998 * 109.47492 * 330.00346 * 19 18 17 29 29 H 1.08996 * 109.46986 * 90.00324 * 21 20 18 30 30 H 1.09001 * 109.46907 * 209.99686 * 21 20 18 31 31 H 1.08998 * 109.47297 * 329.99890 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1387 0.0000 4 6 3.5015 1.1662 -0.0052 5 7 4.3565 2.1711 -0.0095 6 7 5.6508 1.6335 -0.0072 7 6 6.8208 2.3429 -0.0108 8 1 7.7650 1.8279 0.0878 9 6 6.7943 3.7232 -0.1408 10 7 5.6443 4.3616 -0.1434 11 14 8.3918 4.6760 -0.3125 12 1 8.6822 4.9004 -1.7514 13 1 8.2639 5.9852 0.3767 14 1 9.4994 3.8999 0.3009 15 6 5.5337 0.2904 -0.0009 16 8 6.4521 -0.5084 0.0023 17 7 4.2208 -0.0114 0.0002 18 6 3.5583 -1.2122 0.0062 19 6 4.3273 -2.5081 0.0138 20 6 2.2041 -1.2183 0.0063 21 6 1.4511 -2.5237 0.0134 22 1 -0.3633 0.0044 1.0277 23 1 -0.3635 0.8877 -0.5176 24 1 -0.3633 -0.8923 -0.5099 25 1 5.6257 5.3271 -0.2347 26 1 4.5118 -2.8150 1.0434 27 1 3.7478 -3.2775 -0.4963 28 1 5.2785 -2.3692 -0.5000 29 1 1.2695 -2.8328 1.0427 30 1 0.4986 -2.3964 -0.5011 31 1 2.0404 -3.2859 -0.4963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260152904.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:25 Heat of formation + Delta-G solvation = 92.777578 kcal Electronic energy + Delta-G solvation = -18108.163358 eV Core-core repulsion = 15199.821710 eV Total energy + Delta-G solvation = -2908.341647 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.03274 -38.63783 -36.05181 -34.69291 -34.08616 -32.33595 -29.91774 -29.44034 -28.10625 -25.83598 -25.30097 -22.25257 -21.52866 -20.15754 -18.45522 -17.34072 -16.99616 -16.18125 -15.16271 -14.77408 -14.21326 -14.13708 -13.60970 -13.47612 -13.32869 -12.95929 -12.70442 -12.21077 -12.16149 -11.94709 -11.86913 -11.58348 -11.39632 -11.03547 -10.89161 -10.57241 -10.32219 -10.12476 -9.65910 -9.45775 -8.68488 -8.52247 -6.95156 -6.66380 -4.24077 1.11660 2.07509 2.78491 3.00635 3.09250 3.15858 3.74742 3.81336 4.01286 4.19582 4.69628 4.87602 4.93024 5.11206 5.16472 5.41194 5.56364 5.62111 5.71630 5.74282 5.83235 5.86833 5.98015 6.11927 6.24340 6.41090 6.66194 6.96770 7.02381 7.21683 7.80999 8.11248 8.44310 8.65884 9.11021 9.46927 10.31472 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.007186 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.678607 B = 3895.679924 C = 4639.499059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.186 3.814 3 N -0.440 5.440 4 C 0.311 3.689 5 N -0.187 5.187 6 N -0.210 5.210 7 C -0.287 4.287 8 H 0.131 0.869 9 C 0.038 3.962 10 N -0.779 5.779 11 Si 0.945 3.055 12 H -0.269 1.269 13 H -0.274 1.274 14 H -0.261 1.261 15 C 0.543 3.457 16 O -0.594 6.594 17 N -0.486 5.486 18 C 0.188 3.812 19 C -0.122 4.122 20 C -0.223 4.223 21 C -0.090 4.090 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.279 0.721 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 -9.038 -0.037 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.013 3.987 3 N -0.156 5.156 4 C -0.046 4.046 5 N -0.023 5.023 6 N -0.012 5.012 7 C -0.418 4.418 8 H 0.148 0.852 9 C -0.177 4.177 10 N -0.408 5.408 11 Si 0.768 3.232 12 H -0.195 1.195 13 H -0.199 1.199 14 H -0.185 1.185 15 C 0.249 3.751 16 O -0.476 6.476 17 N -0.205 5.205 18 C 0.076 3.924 19 C -0.179 4.179 20 C -0.231 4.231 21 C -0.148 4.148 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.548 -7.245 -0.044 10.462 hybrid contribution 0.973 -0.804 -0.029 1.263 sum -6.574 -8.049 -0.073 10.393 Atomic orbital electron populations 1.20688 0.88143 1.03445 1.03105 1.21298 0.96594 0.86866 0.93917 1.67609 1.02470 1.28329 1.17148 1.22425 0.89717 0.81860 1.10616 1.79033 0.86167 1.12638 1.24441 1.44831 1.04207 1.02626 1.49487 1.19890 0.81959 0.89573 1.50361 0.85207 1.25685 0.99674 0.96652 0.95728 1.70260 1.24844 1.09813 1.35880 0.85635 0.79748 0.78719 0.79113 1.19469 1.19937 1.18512 1.16227 0.81288 0.85055 0.92557 1.90827 1.39976 1.51930 1.64895 1.44124 1.09710 1.07637 1.59001 1.20326 0.91553 0.86527 0.93951 1.21049 1.01390 0.91535 1.03950 1.19633 0.91465 0.97449 1.14547 1.20595 0.99464 0.92614 1.02092 0.90256 0.90373 0.90252 0.91087 0.89802 0.89578 0.88858 0.91520 0.91062 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.12 9.80 36.00 0.35 -0.76 16 2 C 0.19 3.21 6.83 -82.07 -0.56 2.65 16 3 N -0.44 -9.86 10.40 -9.75 -0.10 -9.96 16 4 C 0.31 8.04 8.96 -321.69 -2.88 5.16 16 5 N -0.19 -5.44 10.49 29.91 0.31 -5.12 16 6 N -0.21 -6.12 3.68 -15.46 -0.06 -6.18 16 7 C -0.29 -8.06 10.07 -15.16 -0.15 -8.22 16 8 H 0.13 3.50 7.81 -52.49 -0.41 3.09 16 9 C 0.04 0.99 5.49 -17.52 -0.10 0.89 16 10 N -0.78 -21.59 11.84 55.48 0.66 -20.93 16 11 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 14 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 15 C 0.54 15.07 8.53 -86.93 -0.74 14.33 16 16 O -0.59 -16.85 15.86 5.18 0.08 -16.77 16 17 N -0.49 -11.93 2.91 -64.14 -0.19 -12.11 16 18 C 0.19 3.61 6.81 -81.23 -0.55 3.06 16 19 C -0.12 -1.90 9.25 36.00 0.33 -1.57 16 20 C -0.22 -3.54 5.86 -104.83 -0.61 -4.16 16 21 C -0.09 -0.92 9.21 36.01 0.33 -0.59 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 0.68 6.00 -51.93 -0.31 0.37 16 25 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.09 0.98 5.95 -51.93 -0.31 0.67 16 28 H 0.09 1.72 6.49 -51.93 -0.34 1.38 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.58 6.01 -51.93 -0.31 0.27 16 31 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 LS Contribution 265.97 15.07 4.01 4.01 Total: -1.00 -34.52 265.97 -7.71 -42.23 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -2.81 Total: -0.39 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: -4.59 Total: 10.78 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.63 Total: -54.31 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.08 Total: -16.77 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.52 -7.71 -42.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152904.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.008 kcal (2) G-P(sol) polarization free energy of solvation -34.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds