Wall clock time and date at job start Mon Mar 30 2020 21:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29950 * 124.89731 * 2 1 4 4 C 1.35709 * 108.69273 * 179.97438 * 3 2 1 5 5 C 1.40330 * 106.70162 * 0.02562 * 4 3 2 6 6 N 1.32763 * 118.97964 * 179.97438 * 5 4 3 7 7 C 1.31696 * 120.69353 * 0.03889 * 6 5 4 8 8 C 1.50694 * 118.75938 * 179.97438 * 7 6 5 9 9 N 1.32002 * 122.48038 * 359.95855 * 7 6 5 10 10 C 1.32962 * 121.08726 * 0.02562 * 9 7 6 11 11 N 1.38384 * 120.78671 * 180.02562 * 10 9 7 12 12 C 1.46499 * 120.00347 * 359.97438 * 11 10 9 13 13 C 1.50697 * 109.47257 * 180.02562 * 12 11 10 14 14 H 1.08009 * 120.00009 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00037 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99975 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46877 * 89.99706 * 17 15 13 19 19 H 1.48497 * 109.47114 * 210.00075 * 17 15 13 20 20 H 1.48496 * 109.47064 * 330.00096 * 17 15 13 21 21 O 1.34394 * 124.89940 * 179.69184 * 2 1 3 22 22 H 1.09002 * 109.47152 * 90.00166 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00267 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00248 * 1 2 3 25 25 H 1.08996 * 109.47304 * 269.97759 * 8 7 6 26 26 H 1.09003 * 109.47337 * 29.97833 * 8 7 6 27 27 H 1.08998 * 109.47085 * 149.97993 * 8 7 6 28 28 H 0.97005 * 119.99776 * 179.97438 * 11 10 9 29 29 H 1.09009 * 109.46787 * 300.00032 * 12 11 10 30 30 H 1.08994 * 109.47411 * 59.99833 * 12 11 10 31 31 H 0.96997 * 120.00323 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2505 1.0658 0.0000 4 6 3.5537 0.6871 0.0006 5 6 3.5658 -0.7161 0.0003 6 7 4.7328 -1.3493 0.0003 7 6 5.8637 -0.6745 0.0012 8 6 7.1632 -1.4374 0.0017 9 7 5.9019 0.6450 0.0014 10 6 4.7835 1.3642 0.0012 11 7 4.8308 2.7472 0.0009 12 6 6.1237 3.4360 0.0014 13 6 5.8991 4.9261 0.0016 14 1 4.8936 5.3207 0.0009 15 6 6.9770 5.7858 0.0026 16 7 8.2012 5.3054 0.0039 17 14 6.6985 7.6330 0.0021 18 1 6.6233 8.1226 1.4020 19 1 7.8244 8.3031 -0.6969 20 1 5.4265 7.9416 -0.6993 21 8 2.2759 -1.1022 0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 7.4762 -1.6214 1.0294 26 1 7.0262 -2.3889 -0.5122 27 1 7.9273 -0.8538 -0.5118 28 1 4.0077 3.2606 0.0004 29 1 6.6856 3.1535 0.8918 30 1 6.6865 3.1532 -0.8881 31 1 8.9596 5.9102 0.0049 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260155537.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:28 Heat of formation + Delta-G solvation = 60.200934 kcal Electronic energy + Delta-G solvation = -17262.883289 eV Core-core repulsion = 14353.129012 eV Total energy + Delta-G solvation = -2909.754277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.20866 -39.76550 -36.19852 -34.61497 -32.98744 -32.61539 -31.30416 -30.08703 -27.61349 -26.07206 -24.01412 -22.34911 -22.13907 -21.06554 -18.78804 -17.85230 -17.06394 -17.02705 -15.95233 -14.95273 -14.62875 -14.31498 -14.27223 -13.36451 -13.34853 -13.18090 -13.13558 -12.86614 -12.21561 -12.11854 -12.02073 -11.45237 -11.33770 -11.02315 -10.98005 -10.42256 -10.30318 -10.21332 -9.48992 -9.09625 -8.81020 -8.60604 -7.30244 -6.25084 -4.32402 0.90177 1.57257 2.15851 2.53254 3.20779 3.27004 3.29606 3.62396 3.86361 4.07903 4.26520 4.39203 4.42977 4.99676 5.08974 5.11791 5.21655 5.26152 5.54295 5.67794 5.74674 5.89154 6.00778 6.23297 6.52895 6.94688 7.18516 7.36360 7.43724 7.64819 7.81789 7.87771 8.24446 8.59103 8.79896 9.33653 10.84836 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.005863 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.227136 B = 4774.515879 C = 5913.993304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.202 3.798 3 N -0.436 5.436 4 C -0.159 4.159 5 C 0.289 3.711 6 N -0.563 5.563 7 C 0.398 3.602 8 C -0.079 4.079 9 N -0.573 5.573 10 C 0.509 3.491 11 N -0.654 5.654 12 C 0.249 3.751 13 C -0.549 4.549 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.883 5.883 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.272 1.272 21 O -0.204 6.204 22 H 0.093 0.907 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.412 0.588 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 -10.920 0.003 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.012 4.012 3 N -0.165 5.165 4 C -0.283 4.283 5 C 0.106 3.894 6 N -0.298 5.298 7 C 0.129 3.871 8 C -0.137 4.137 9 N -0.304 5.304 10 C 0.254 3.746 11 N -0.276 5.276 12 C 0.129 3.871 13 C -0.588 4.588 14 H 0.082 0.918 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.197 1.197 21 O -0.091 6.091 22 H 0.112 0.888 23 H 0.122 0.878 24 H 0.108 0.892 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.249 0.751 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.945 -10.521 0.000 13.809 hybrid contribution -0.943 0.972 0.019 1.354 sum -9.888 -9.549 0.020 13.746 Atomic orbital electron populations 1.20275 0.80654 1.05192 1.04770 1.26243 0.96137 0.77542 1.01245 1.70232 1.00434 1.29164 1.16703 1.20519 0.92718 0.94354 1.20696 1.19994 0.84894 0.89001 0.95524 1.67031 0.93958 1.40821 1.27976 1.22919 0.92189 0.85886 0.86099 1.20558 0.89909 0.99171 1.04084 1.68138 1.27309 1.07608 1.27359 1.18019 0.84819 0.86968 0.84797 1.45748 1.13146 1.00338 1.68339 1.19379 0.78277 0.90907 0.98521 1.21197 0.93514 0.90185 1.53865 0.91795 1.24903 0.94752 0.99598 0.94420 1.69955 0.98005 1.35547 1.48521 0.86383 0.78028 0.84045 0.78325 1.20364 1.20884 1.19693 1.84294 1.13812 1.36497 1.74509 0.88833 0.87850 0.89239 0.89326 0.89621 0.88901 0.75113 0.94579 0.94567 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.20 2.94 8.24 -13.07 -0.11 2.83 16 3 N -0.44 -7.79 11.33 -8.53 -0.10 -7.89 16 4 C -0.16 -3.19 7.18 -84.55 -0.61 -3.80 16 5 C 0.29 5.56 8.66 -16.36 -0.14 5.42 16 6 N -0.56 -10.59 10.34 -10.72 -0.11 -10.70 16 7 C 0.40 7.20 7.63 -157.10 -1.20 6.01 16 8 C -0.08 -1.02 10.30 36.00 0.37 -0.65 16 9 N -0.57 -11.98 9.59 -9.79 -0.09 -12.07 16 10 C 0.51 10.92 7.55 -154.66 -1.17 9.75 16 11 N -0.65 -14.56 5.68 -61.28 -0.35 -14.90 16 12 C 0.25 6.40 5.49 -5.20 -0.03 6.37 16 13 C -0.55 -14.77 9.28 -34.44 -0.32 -15.09 16 14 H 0.06 1.65 7.60 -52.48 -0.40 1.25 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 16 N -0.88 -25.19 13.29 55.43 0.74 -24.45 16 17 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 O -0.20 -3.42 10.75 4.53 0.05 -3.37 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.41 8.65 8.34 -40.82 -0.34 8.31 16 29 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -31.76 281.53 -6.82 -38.57 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -3.26 Total: 2.38 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -2.92 Total: 12.54 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: 0.09 Total: -70.01 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: 0.05 Total: -3.37 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.76 -6.82 -38.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260155537.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.775 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds