Wall clock time and date at job start Mon Mar 30 2020 21:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29946 * 124.89873 * 2 1 4 4 C 1.35716 * 108.69044 * 180.02562 * 3 2 1 5 5 C 1.40322 * 106.70436 * 359.97438 * 4 3 2 6 6 N 1.32759 * 118.98334 * 179.97438 * 5 4 3 7 7 C 1.31702 * 120.69028 * 0.02562 * 6 5 4 8 8 N 1.31997 * 122.48173 * 359.77326 * 7 6 5 9 9 C 1.32969 * 121.08555 * 0.47583 * 8 7 6 10 10 N 1.38384 * 120.78719 * 179.79655 * 9 8 7 11 11 C 1.46499 * 120.00090 * 359.72320 * 10 9 8 12 12 C 1.53000 * 109.46840 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 O 1.34396 * 124.89711 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46705 * 300.00071 * 1 2 3 24 24 H 1.08994 * 109.47557 * 59.99872 * 1 2 3 25 25 H 1.08003 * 118.75495 * 179.97438 * 7 6 5 26 26 H 0.97000 * 119.99489 * 179.71508 * 10 9 8 27 27 H 1.09002 * 109.47391 * 59.99630 * 11 10 9 28 28 H 1.09001 * 109.46813 * 299.99687 * 11 10 9 29 29 H 1.09001 * 109.47194 * 299.99493 * 12 11 10 30 30 H 1.08992 * 109.47399 * 59.99666 * 12 11 10 31 31 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2505 1.0658 0.0000 4 6 3.5537 0.6869 -0.0006 5 6 3.5658 -0.7162 -0.0003 6 7 4.7327 -1.3494 -0.0013 7 6 5.8637 -0.6746 -0.0020 8 7 5.9019 0.6448 -0.0061 9 6 4.7835 1.3640 -0.0004 10 7 4.8308 2.7471 -0.0006 11 6 6.1238 3.4358 -0.0010 12 6 5.8958 4.9487 -0.0018 13 6 7.2259 5.6572 -0.0028 14 1 8.1422 5.0855 -0.0025 15 6 7.2729 7.0352 -0.0042 16 7 6.1572 7.7313 -0.0051 17 14 8.9217 7.9134 -0.0048 18 1 9.3587 8.1447 -1.4051 19 1 8.7884 9.2169 0.6939 20 1 9.9285 7.0766 0.6962 21 8 2.2759 -1.1023 -0.0005 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 6.7950 -1.2215 -0.0024 26 1 4.0078 3.2604 -0.0006 27 1 6.6859 3.1530 -0.8911 28 1 6.6863 3.1532 0.8889 29 1 5.3335 5.2309 -0.8919 30 1 5.3335 5.2319 0.8880 31 1 6.1902 8.7007 -0.0064 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260170952.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:30 Heat of formation + Delta-G solvation = 34.392889 kcal Electronic energy + Delta-G solvation = -16950.410965 eV Core-core repulsion = 14039.537568 eV Total energy + Delta-G solvation = -2910.873397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.60909 -41.16254 -38.01577 -36.15734 -35.23812 -33.84112 -32.93816 -31.27173 -29.10705 -26.84019 -25.25383 -24.52622 -22.98839 -22.48528 -20.43995 -19.15218 -18.84152 -18.38865 -18.02338 -16.63635 -16.20502 -16.19945 -15.75748 -15.11808 -15.07939 -14.95303 -14.24816 -14.10767 -13.57122 -13.27975 -13.26480 -12.89314 -12.71250 -12.51488 -12.45088 -11.87460 -11.64922 -11.62396 -11.42733 -10.69623 -10.56320 -10.38110 -9.03557 -8.24631 -6.35945 -0.49282 -0.04360 0.87251 1.22194 1.42856 1.43658 1.55012 1.86594 2.41750 2.58176 2.62239 2.91676 3.10708 3.25052 3.54016 3.85701 4.31195 4.38887 4.48221 4.60182 4.65159 4.73202 4.82154 5.05066 5.17595 5.35681 5.48652 5.52886 5.69023 5.87616 6.09664 6.27077 6.39895 6.78417 7.04790 7.33978 8.87703 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036630 B = 0.004392 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.215534 B = 6374.057356 C = 7112.523482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.237 3.763 3 N -0.478 5.478 4 C -0.159 4.159 5 C 0.268 3.732 6 N -0.558 5.558 7 C 0.379 3.621 8 N -0.591 5.591 9 C 0.495 3.505 10 N -0.678 5.678 11 C 0.149 3.851 12 C 0.018 3.982 13 C -0.542 4.542 14 H 0.067 0.933 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.261 1.261 21 O -0.204 6.204 22 H 0.118 0.882 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.257 0.743 26 H 0.417 0.583 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.003 0.997 30 H 0.003 0.997 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 -16.625 0.023 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.024 3.976 3 N -0.207 5.207 4 C -0.281 4.281 5 C 0.084 3.916 6 N -0.290 5.290 7 C 0.091 3.909 8 N -0.322 5.322 9 C 0.243 3.757 10 N -0.305 5.305 11 C 0.026 3.974 12 C -0.019 4.019 13 C -0.581 4.581 14 H 0.086 0.914 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 O -0.091 6.091 22 H 0.136 0.864 23 H 0.137 0.863 24 H 0.137 0.863 25 H 0.273 0.727 26 H 0.255 0.745 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.148 -16.187 0.021 18.122 hybrid contribution -0.107 0.762 -0.009 0.770 sum -8.255 -15.425 0.012 17.495 Atomic orbital electron populations 1.20778 0.76009 1.07326 1.07058 1.27729 0.97991 0.76205 0.95638 1.70335 0.99924 1.30428 1.20020 1.20641 0.93291 0.94656 1.19504 1.20362 0.85926 0.88985 0.96325 1.67368 0.94532 1.41298 1.25780 1.25685 0.95196 0.85181 0.84836 1.68259 1.27172 1.09929 1.26826 1.18118 0.86014 0.86187 0.85372 1.45147 1.11203 1.01361 1.72774 1.21439 0.82495 0.92199 1.01222 1.19172 0.97053 0.89715 0.95969 1.21443 0.93155 0.92050 1.51435 0.91444 1.25933 1.00571 0.98532 0.94369 1.70081 1.28824 1.07015 1.51076 0.85391 0.79149 0.77674 0.78518 1.19779 1.20850 1.18547 1.84392 1.13180 1.37334 1.74197 0.86358 0.86276 0.86276 0.72711 0.74519 0.91929 0.91938 0.97915 0.97896 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.24 5.60 8.24 88.39 0.73 6.33 16 3 N -0.48 -14.77 11.33 -295.62 -3.35 -18.12 16 4 C -0.16 -5.44 7.18 39.57 0.28 -5.16 16 5 C 0.27 8.63 8.66 85.06 0.74 9.36 16 6 N -0.56 -16.72 10.46 -313.21 -3.28 -19.99 16 7 C 0.38 10.01 12.25 180.85 2.22 12.23 16 8 N -0.59 -19.39 9.70 -197.02 -1.91 -21.30 16 9 C 0.50 17.72 7.55 133.41 1.01 18.72 16 10 N -0.68 -25.53 5.69 -344.06 -1.96 -27.49 16 11 C 0.15 6.21 5.68 86.38 0.49 6.70 16 12 C 0.02 0.93 5.09 29.85 0.15 1.09 16 13 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.00 0.25 5.46 84.66 0.46 0.71 16 16 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 17 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 21 O -0.20 -5.64 10.76 -6.78 -0.07 -5.72 16 22 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.12 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.26 4.00 8.06 -2.91 -0.02 3.98 16 26 H 0.42 15.49 8.50 -92.71 -0.79 14.70 16 27 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.02 281.40 -0.82 -70.84 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.38 Total: 10.80 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 7.06 Total: 20.60 kcal Atomic # 7 Polarization: -131.46 SS G_CDS: -10.21 Total: -141.67 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.07 Total: -5.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.02 -0.82 -70.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260170952.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.236 kcal (2) G-P(sol) polarization free energy of solvation -70.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds