Wall clock time and date at job start Mon Mar 30 2020 21:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00184 * 2 1 4 4 H 1.48505 * 109.47189 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47268 * 120.00100 * 3 2 1 6 6 H 1.48500 * 109.47083 * 240.00234 * 3 2 1 7 7 C 1.37878 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00148 * 341.80871 * 7 2 1 9 9 C 1.50698 * 119.99879 * 161.81561 * 7 2 1 10 10 H 1.09002 * 109.51014 * 54.40588 * 9 7 2 11 11 C 1.53101 * 109.50628 * 294.32038 * 9 7 2 12 12 O 1.43019 * 109.26071 * 183.21717 * 11 9 7 13 13 C 1.43015 * 113.73625 * 58.66977 * 12 11 9 14 14 C 1.53106 * 109.25849 * 301.32988 * 13 12 11 15 15 N 1.47013 * 109.29402 * 56.82831 * 14 13 12 16 16 C 1.46897 * 111.03610 * 177.64939 * 15 14 13 17 17 C 1.50700 * 109.47284 * 293.65937 * 16 15 14 18 18 C 1.38655 * 120.78604 * 269.72026 * 17 16 15 19 19 C 1.38199 * 119.15697 * 179.75641 * 18 17 16 20 20 N 1.31870 * 120.76771 * 0.52798 * 19 18 17 21 21 C 1.31865 * 121.72389 * 359.74466 * 20 19 18 22 22 C 1.38210 * 120.76693 * 359.97438 * 21 20 19 23 23 H 0.96993 * 120.00009 * 174.57836 * 1 2 3 24 24 H 1.09000 * 109.50557 * 303.14998 * 11 9 7 25 25 H 1.09003 * 109.50777 * 63.28055 * 11 9 7 26 26 H 1.08996 * 109.50947 * 61.26465 * 13 12 11 27 27 H 1.09000 * 109.50763 * 181.35349 * 13 12 11 28 28 H 1.08996 * 109.50611 * 176.78680 * 14 13 12 29 29 H 1.08995 * 109.50198 * 296.87110 * 14 13 12 30 30 H 1.08994 * 109.47142 * 53.66169 * 16 15 14 31 31 H 1.09007 * 109.46791 * 173.65784 * 16 15 14 32 32 H 1.08001 * 120.41807 * 0.02562 * 18 17 16 33 33 H 1.08009 * 119.61592 * 180.29549 * 19 18 17 34 34 H 1.08003 * 119.61920 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.42002 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.5050 -2.1058 0.2929 9 6 3.4550 -1.2269 -0.4067 10 1 4.0183 -0.5136 0.1950 11 6 3.5788 -0.8569 -1.8872 12 8 4.9480 -0.9624 -2.2870 13 6 5.5039 -2.2665 -2.0982 14 6 5.3996 -2.6508 -0.6199 15 7 3.9934 -2.5788 -0.1973 16 6 3.8417 -2.9946 1.2035 17 6 4.1730 -4.4592 1.3314 18 6 3.1875 -5.4245 1.1920 19 6 3.5298 -6.7582 1.3108 20 7 4.7737 -7.1155 1.5639 21 6 5.7353 -6.2247 1.7079 22 6 5.4693 -4.8730 1.5969 23 1 -0.4850 -0.8362 -0.0794 24 1 2.9718 -1.5373 -2.4844 25 1 3.2338 0.1663 -2.0368 26 1 4.9528 -2.9879 -2.7015 27 1 6.5509 -2.2632 -2.4011 28 1 5.7699 -3.6665 -0.4808 29 1 5.9952 -1.9612 -0.0218 30 1 4.5177 -2.4131 1.8303 31 1 2.8135 -2.8253 1.5234 32 1 2.1662 -5.1380 0.9888 33 1 2.7689 -7.5165 1.1988 34 1 6.7424 -6.5553 1.9150 35 1 6.2613 -4.1484 1.7155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:33 Heat of formation + Delta-G solvation = -0.656286 kcal Electronic energy + Delta-G solvation = -18363.530835 eV Core-core repulsion = 15554.677935 eV Total energy + Delta-G solvation = -2808.852900 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09441 -38.77123 -35.56551 -33.35380 -32.18885 -31.08275 -30.42239 -27.91212 -25.22814 -24.23590 -23.30636 -21.99715 -21.35826 -19.33439 -17.77177 -16.49452 -16.15810 -15.83143 -15.50429 -15.32268 -14.56184 -14.15486 -13.98042 -13.77000 -13.58858 -13.48302 -13.09817 -12.16566 -12.00469 -11.92893 -11.55826 -11.18436 -11.11349 -10.70006 -10.40474 -10.11631 -9.84845 -9.46470 -9.36144 -9.19624 -8.99664 -8.68363 -8.47386 -7.61105 -6.61398 -4.24338 1.28043 1.42762 3.28855 3.35199 3.51574 3.93030 4.36023 4.50407 4.56302 4.63715 4.94102 4.96528 5.07768 5.26220 5.34498 5.45095 5.59538 5.67567 5.74228 5.76318 5.95909 5.99824 6.11843 6.18531 6.24507 6.32821 6.42919 6.59054 6.70409 6.86649 6.95377 7.34598 7.69433 7.79240 8.08156 8.12788 8.26278 8.78523 9.42751 10.77229 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.007359 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.494967 B = 3803.989060 C = 4457.930430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.037 3.963 3 Si 1.032 2.968 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.598 4.598 8 H 0.069 0.931 9 C 0.165 3.835 10 H 0.002 0.998 11 C 0.056 3.944 12 O -0.402 6.402 13 C 0.069 3.931 14 C 0.011 3.989 15 N -0.517 5.517 16 C 0.095 3.905 17 C -0.019 4.019 18 C -0.150 4.150 19 C 0.092 3.908 20 N -0.495 5.495 21 C 0.090 3.910 22 C -0.173 4.173 23 H 0.271 0.729 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 -7.534 1.247 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.170 4.170 3 Si 0.860 3.140 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.636 4.636 8 H 0.087 0.913 9 C 0.057 3.943 10 H 0.020 0.980 11 C -0.020 4.020 12 O -0.321 6.321 13 C -0.008 4.008 14 C -0.117 4.117 15 N -0.242 5.242 16 C -0.033 4.033 17 C -0.028 4.028 18 C -0.170 4.170 19 C -0.064 4.064 20 N -0.205 5.205 21 C -0.066 4.066 22 C -0.193 4.193 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.674 -6.919 1.025 11.938 hybrid contribution 0.316 -0.456 0.472 0.729 sum 9.990 -7.376 1.497 12.508 Atomic orbital electron populations 1.70835 1.06961 1.30717 1.44195 1.25679 0.96102 1.02132 0.93059 0.84218 0.75618 0.76570 0.77560 1.20710 1.20951 1.19813 1.21868 0.93733 0.96888 1.51089 0.91328 1.20198 0.96950 0.84291 0.92828 0.98041 1.23543 0.80013 1.02037 0.96440 1.87876 1.28507 1.30014 1.85744 1.22462 0.98063 0.85770 0.94526 1.22859 0.91089 1.00595 0.97191 1.62140 1.14786 1.28568 1.18693 1.21054 1.03697 0.88455 0.90070 1.20504 0.92789 0.96980 0.92539 1.22118 1.01110 0.93536 1.00243 1.22709 0.93306 0.94801 0.95625 1.67619 1.01197 1.39043 1.12631 1.22622 0.98324 0.89303 0.96389 1.22083 0.97180 0.97404 1.02670 0.91868 0.92980 0.88731 0.93150 0.89752 0.90830 0.94987 0.94603 0.87548 0.84578 0.83062 0.83268 0.85392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.70 55.43 0.76 -25.19 16 2 C 0.04 1.01 5.34 -17.82 -0.10 0.92 16 3 Si 1.03 24.05 26.43 -169.99 -4.49 19.56 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -5.95 5.56 56.52 0.31 -5.64 16 7 C -0.60 -15.65 7.91 -34.44 -0.27 -15.92 16 8 H 0.07 1.92 7.06 -52.49 -0.37 1.55 16 9 C 0.16 3.82 1.55 -68.75 -0.11 3.71 16 10 H 0.00 0.05 6.79 -51.93 -0.35 -0.30 16 11 C 0.06 1.26 5.97 37.21 0.22 1.48 16 12 O -0.40 -8.33 10.83 -35.23 -0.38 -8.71 16 13 C 0.07 1.18 7.01 37.21 0.26 1.44 16 14 C 0.01 0.20 5.31 -3.71 -0.02 0.18 16 15 N -0.52 -10.42 4.52 -229.16 -1.04 -11.46 16 16 C 0.09 1.74 4.96 -4.98 -0.02 1.72 16 17 C -0.02 -0.31 4.92 -104.32 -0.51 -0.82 16 18 C -0.15 -2.27 9.82 -39.44 -0.39 -2.66 16 19 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 20 N -0.50 -7.22 10.36 -13.25 -0.14 -7.36 16 21 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 22 C -0.17 -2.36 8.09 -39.44 -0.32 -2.68 16 23 H 0.27 7.83 8.73 -40.82 -0.36 7.48 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.09 2.18 4.87 -51.93 -0.25 1.92 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.13 6.05 -51.93 -0.31 0.82 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.11 2.19 6.12 -51.92 -0.32 1.87 16 32 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 34 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.13 1.53 8.04 -52.49 -0.42 1.11 16 LS Contribution 281.32 15.07 4.24 4.24 Total: -1.00 -29.29 281.32 -7.34 -36.63 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.65 Total: 2.86 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.65 Total: -10.57 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.41 Total: -44.00 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.38 Total: -8.71 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.49 Total: 19.56 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.29 -7.34 -36.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.972 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds