Wall clock time and date at job start Mon Mar 30 2020 21:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00184 * 2 1 4 4 H 1.48505 * 109.47189 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47268 * 120.00100 * 3 2 1 6 6 H 1.48500 * 109.47083 * 240.00234 * 3 2 1 7 7 C 1.37878 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00148 * 341.80871 * 7 2 1 9 9 C 1.50698 * 119.99879 * 161.81561 * 7 2 1 10 10 H 1.09002 * 109.51014 * 54.40588 * 9 7 2 11 11 C 1.53101 * 109.50628 * 294.32038 * 9 7 2 12 12 O 1.43019 * 109.26071 * 183.21717 * 11 9 7 13 13 C 1.43015 * 113.73625 * 58.66977 * 12 11 9 14 14 C 1.53106 * 109.25849 * 301.32988 * 13 12 11 15 15 N 1.47013 * 109.29402 * 56.82831 * 14 13 12 16 16 C 1.46897 * 111.03610 * 177.64939 * 15 14 13 17 17 C 1.50700 * 109.47284 * 293.65937 * 16 15 14 18 18 C 1.38655 * 120.78604 * 269.72026 * 17 16 15 19 19 C 1.38199 * 119.15697 * 179.75641 * 18 17 16 20 20 N 1.31870 * 120.76771 * 0.52798 * 19 18 17 21 21 C 1.31865 * 121.72389 * 359.74466 * 20 19 18 22 22 C 1.38210 * 120.76693 * 359.97438 * 21 20 19 23 23 H 0.96993 * 120.00009 * 174.57836 * 1 2 3 24 24 H 1.09000 * 109.50557 * 303.14998 * 11 9 7 25 25 H 1.09003 * 109.50777 * 63.28055 * 11 9 7 26 26 H 1.08996 * 109.50947 * 61.26465 * 13 12 11 27 27 H 1.09000 * 109.50763 * 181.35349 * 13 12 11 28 28 H 1.08996 * 109.50611 * 176.78680 * 14 13 12 29 29 H 1.08995 * 109.50198 * 296.87110 * 14 13 12 30 30 H 1.08994 * 109.47142 * 53.66169 * 16 15 14 31 31 H 1.09007 * 109.46791 * 173.65784 * 16 15 14 32 32 H 1.08001 * 120.41807 * 0.02562 * 18 17 16 33 33 H 1.08009 * 119.61592 * 180.29549 * 19 18 17 34 34 H 1.08003 * 119.61920 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.42002 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.5050 -2.1058 0.2929 9 6 3.4550 -1.2269 -0.4067 10 1 4.0183 -0.5136 0.1950 11 6 3.5788 -0.8569 -1.8872 12 8 4.9480 -0.9624 -2.2870 13 6 5.5039 -2.2665 -2.0982 14 6 5.3996 -2.6508 -0.6199 15 7 3.9934 -2.5788 -0.1973 16 6 3.8417 -2.9946 1.2035 17 6 4.1730 -4.4592 1.3314 18 6 3.1875 -5.4245 1.1920 19 6 3.5298 -6.7582 1.3108 20 7 4.7737 -7.1155 1.5639 21 6 5.7353 -6.2247 1.7079 22 6 5.4693 -4.8730 1.5969 23 1 -0.4850 -0.8362 -0.0794 24 1 2.9718 -1.5373 -2.4844 25 1 3.2338 0.1663 -2.0368 26 1 4.9528 -2.9879 -2.7015 27 1 6.5509 -2.2632 -2.4011 28 1 5.7699 -3.6665 -0.4808 29 1 5.9952 -1.9612 -0.0218 30 1 4.5177 -2.4131 1.8303 31 1 2.8135 -2.8253 1.5234 32 1 2.1662 -5.1380 0.9888 33 1 2.7689 -7.5165 1.1988 34 1 6.7424 -6.5553 1.9150 35 1 6.2613 -4.1484 1.7155 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260174640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:32 Heat of formation + Delta-G solvation = -21.736871 kcal Electronic energy + Delta-G solvation = -18364.444958 eV Core-core repulsion = 15554.677935 eV Total energy + Delta-G solvation = -2809.767023 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29671 -40.28445 -37.08581 -35.25594 -33.59088 -32.30407 -31.99368 -29.39313 -27.00509 -25.73295 -24.45690 -23.63597 -22.62733 -21.01297 -19.80127 -17.72869 -17.48877 -17.26863 -16.89067 -16.60413 -16.17370 -15.71520 -15.52556 -15.36425 -15.06504 -14.55722 -14.44340 -13.99876 -13.60490 -13.38465 -13.11284 -12.87918 -12.56819 -12.23910 -12.00195 -11.83140 -11.61879 -11.08013 -10.69143 -10.60429 -10.44999 -10.36323 -10.05972 -9.20626 -8.78917 -6.41056 0.20375 0.25896 1.43308 1.46531 1.67300 2.42382 2.75588 2.93367 3.00937 3.21039 3.57571 3.68051 3.84317 4.05663 4.18613 4.20209 4.25759 4.27303 4.35084 4.41432 4.54979 4.66628 4.70098 4.81294 4.85483 4.90102 4.94923 5.05064 5.15115 5.46627 5.57361 5.77158 5.93474 6.05347 6.22876 6.41381 6.63094 7.00757 7.33702 8.59088 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.025670 B = 0.007359 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.494967 B = 3803.989060 C = 4457.930430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 1.069 2.931 4 H -0.284 1.284 5 H -0.269 1.269 6 H -0.247 1.247 7 C -0.591 4.591 8 H 0.036 0.964 9 C 0.169 3.831 10 H -0.004 1.004 11 C 0.065 3.935 12 O -0.408 6.408 13 C 0.061 3.939 14 C 0.014 3.986 15 N -0.531 5.531 16 C 0.102 3.898 17 C -0.035 4.035 18 C -0.166 4.166 19 C 0.094 3.906 20 N -0.509 5.509 21 C 0.096 3.904 22 C -0.167 4.167 23 H 0.257 0.743 24 H 0.039 0.961 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.175 0.825 34 H 0.186 0.814 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 -8.175 1.129 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.208 4.208 3 Si 0.891 3.109 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.629 4.629 8 H 0.054 0.946 9 C 0.060 3.940 10 H 0.014 0.986 11 C -0.012 4.012 12 O -0.327 6.327 13 C -0.015 4.015 14 C -0.114 4.114 15 N -0.256 5.256 16 C -0.025 4.025 17 C -0.043 4.043 18 C -0.186 4.186 19 C -0.062 4.062 20 N -0.218 5.218 21 C -0.061 4.061 22 C -0.188 4.188 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.142 0.858 33 H 0.192 0.808 34 H 0.203 0.797 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.847 -7.594 0.904 14.951 hybrid contribution -0.619 -0.416 0.539 0.920 sum 12.229 -8.010 1.443 14.690 Atomic orbital electron populations 1.70946 1.08129 1.29888 1.47258 1.26897 0.96041 1.05500 0.92403 0.83751 0.75082 0.72930 0.79120 1.20980 1.19483 1.17245 1.21961 0.95532 0.95512 1.49878 0.94599 1.19995 0.94763 0.86059 0.93164 0.98622 1.23215 0.81258 1.01254 0.95478 1.87861 1.27012 1.32207 1.85634 1.22812 1.00105 0.84127 0.94468 1.22943 0.89053 1.02179 0.97257 1.62062 1.17170 1.26510 1.19907 1.20870 1.01780 0.90646 0.89250 1.20341 0.94305 0.95249 0.94437 1.22131 1.00684 0.94427 1.01403 1.23015 0.93902 0.94565 0.94692 1.67718 1.01521 1.39642 1.12954 1.23202 0.99489 0.88758 0.94612 1.22255 0.96407 0.98338 1.01759 0.93384 0.94265 0.89438 0.93240 0.85620 0.88499 0.94317 0.94063 0.91050 0.85810 0.80793 0.79701 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.70 21.45 0.29 -55.53 16 2 C -0.01 -0.44 5.34 84.65 0.45 0.02 16 3 Si 1.07 48.45 26.43 68.60 1.81 50.26 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.25 -10.22 5.56 99.48 0.55 -9.66 16 7 C -0.59 -31.97 7.91 25.60 0.20 -31.76 16 8 H 0.04 2.13 7.06 -2.91 -0.02 2.11 16 9 C 0.17 7.78 1.55 44.18 0.07 7.84 16 10 H 0.00 -0.17 6.79 -2.39 -0.02 -0.19 16 11 C 0.06 2.86 5.97 72.02 0.43 3.29 16 12 O -0.41 -15.91 10.83 -148.98 -1.61 -17.52 16 13 C 0.06 1.90 7.01 72.02 0.50 2.40 16 14 C 0.01 0.43 5.31 86.32 0.46 0.89 16 15 N -0.53 -21.09 4.52 -878.93 -3.97 -25.06 16 16 C 0.10 3.76 4.96 85.56 0.42 4.19 16 17 C -0.03 -1.07 4.92 -19.67 -0.10 -1.16 16 18 C -0.17 -5.01 9.82 22.36 0.22 -4.79 16 19 C 0.09 2.48 11.18 84.68 0.95 3.42 16 20 N -0.51 -13.44 10.36 -195.84 -2.03 -15.47 16 21 C 0.10 2.15 11.18 84.68 0.95 3.10 16 22 C -0.17 -4.06 8.09 22.36 0.18 -3.88 16 23 H 0.26 15.69 8.73 -92.71 -0.81 14.88 16 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.09 3.94 4.87 -2.39 -0.01 3.93 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.10 2.62 6.05 -2.39 -0.01 2.61 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 31 H 0.07 3.10 6.12 -2.38 -0.01 3.09 16 32 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.15 2.95 8.04 -2.91 -0.02 2.93 16 Total: -1.00 -64.28 281.32 0.12 -64.16 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.89 Total: 15.63 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 4.74 Total: -16.45 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -5.71 Total: -96.07 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.61 Total: -17.52 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 1.81 Total: 50.26 kcal Total: -64.28 0.12 -64.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.419 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds