Wall clock time and date at job start Mon Mar 30 2020 21:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.50742 * 300.08900 * 9 7 2 11 11 C 1.53096 * 109.50788 * 60.22056 * 9 7 2 12 12 O 1.43016 * 109.26005 * 176.78427 * 11 9 7 13 13 C 1.43013 * 113.73603 * 301.32746 * 12 11 9 14 14 C 1.53104 * 109.25978 * 58.67222 * 13 12 11 15 15 N 1.47013 * 109.25480 * 303.14821 * 14 13 12 16 16 C 1.46896 * 111.00084 * 182.39034 * 15 14 13 17 17 C 1.50705 * 109.46788 * 46.36641 * 16 15 14 18 18 C 1.38656 * 120.78911 * 269.71908 * 17 16 15 19 19 C 1.38205 * 119.15524 * 179.75743 * 18 17 16 20 20 N 1.31869 * 120.77014 * 0.53070 * 19 18 17 21 21 C 1.31871 * 121.72066 * 359.74368 * 20 19 18 22 22 C 1.38202 * 120.77015 * 359.97438 * 21 20 19 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.50453 * 296.71411 * 11 9 7 25 25 H 1.08990 * 109.50986 * 56.84565 * 11 9 7 26 26 H 1.09003 * 109.50601 * 298.73611 * 13 12 11 27 27 H 1.09009 * 109.54303 * 178.62651 * 13 12 11 28 28 H 1.09003 * 109.50521 * 183.21832 * 14 13 12 29 29 H 1.08993 * 109.50492 * 63.08412 * 14 13 12 30 30 H 1.08999 * 109.47351 * 166.36832 * 16 15 14 31 31 H 1.09000 * 109.47247 * 286.37280 * 16 15 14 32 32 H 1.07994 * 120.41939 * 0.02562 * 18 17 16 33 33 H 1.08002 * 119.61208 * 180.25145 * 19 18 17 34 34 H 1.08000 * 119.61258 * 180.02562 * 21 20 19 35 35 H 1.07992 * 120.42191 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6233 -2.5570 0.8887 11 6 0.3742 -2.5832 -1.2527 12 8 -0.2806 -3.8542 -1.2856 13 6 0.6194 -4.9656 -1.2877 14 6 1.4988 -4.9058 -0.0358 15 7 2.2057 -3.6172 -0.0011 16 6 3.1057 -3.5416 1.1574 17 6 3.8991 -4.8186 1.2613 18 6 3.4267 -5.8892 2.0052 19 6 4.1796 -7.0461 2.0733 20 7 5.3384 -7.1346 1.4503 21 6 5.8211 -6.1348 0.7386 22 6 5.1215 -4.9488 0.6202 23 1 -0.4850 0.8401 0.0004 24 1 -0.3726 -1.7896 -1.2280 25 1 0.9961 -2.4711 -2.1407 26 1 1.2486 -4.9228 -2.1769 27 1 0.0506 -5.8955 -1.2888 28 1 2.2247 -5.7185 -0.0617 29 1 0.8745 -5.0025 0.8523 30 1 3.7868 -2.6996 1.0340 31 1 2.5184 -3.4038 2.0653 32 1 2.4803 -5.8213 2.5211 33 1 3.8166 -7.8860 2.6473 34 1 6.7738 -6.2444 0.2419 35 1 5.5219 -4.1338 0.0356 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260174644.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:35 Heat of formation + Delta-G solvation = -0.817554 kcal Electronic energy + Delta-G solvation = -18326.923903 eV Core-core repulsion = 15518.064009 eV Total energy + Delta-G solvation = -2808.859893 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.14052 -38.50563 -35.40759 -33.38564 -32.00772 -31.07079 -29.90934 -27.63901 -25.43998 -24.05708 -23.33896 -22.30887 -21.24979 -19.29748 -16.82589 -16.33115 -16.10578 -15.60397 -15.46589 -15.04122 -14.57387 -14.02271 -13.84117 -13.73835 -13.51402 -13.36218 -12.90752 -12.23605 -11.92484 -11.87576 -11.15117 -11.03678 -10.94826 -10.74500 -10.40977 -10.29073 -9.85228 -9.47889 -9.32000 -9.11892 -8.99831 -8.74950 -8.44257 -7.39890 -6.19424 -4.24616 1.27887 1.41891 3.23235 3.28822 3.30618 3.94162 4.27545 4.56360 4.75660 4.86053 4.94467 4.99160 5.16067 5.28134 5.32965 5.63733 5.75237 5.76491 5.82215 5.86836 6.03462 6.15423 6.23034 6.35647 6.38693 6.60643 6.64518 6.82440 6.86687 7.17120 7.40701 7.60058 7.76732 8.05775 8.07951 8.09303 8.42682 8.81321 9.41344 10.88532 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.007154 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.974469 B = 3913.023432 C = 4753.214001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.286 1.286 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.189 3.811 10 H 0.010 0.990 11 C 0.069 3.931 12 O -0.404 6.404 13 C 0.068 3.932 14 C 0.016 3.984 15 N -0.524 5.524 16 C 0.101 3.899 17 C -0.025 4.025 18 C -0.170 4.170 19 C 0.091 3.909 20 N -0.495 5.495 21 C 0.092 3.908 22 C -0.154 4.154 23 H 0.266 0.734 24 H 0.124 0.876 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -9.138 1.668 11.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.083 3.917 10 H 0.028 0.972 11 C -0.007 4.007 12 O -0.323 6.323 13 C -0.010 4.010 14 C -0.113 4.113 15 N -0.250 5.250 16 C -0.027 4.027 17 C -0.034 4.034 18 C -0.190 4.190 19 C -0.066 4.066 20 N -0.205 5.205 21 C -0.065 4.065 22 C -0.175 4.175 23 H 0.076 0.924 24 H 0.142 0.858 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.059 0.941 32 H 0.147 0.853 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.361 -9.733 1.298 11.699 hybrid contribution -0.273 1.673 0.706 1.836 sum 6.088 -8.060 2.004 10.298 Atomic orbital electron populations 1.69831 1.05947 1.27276 1.49965 1.24988 0.94963 0.99447 0.94670 0.86494 0.79457 0.82399 0.78736 1.21163 1.20206 1.20047 1.21000 0.93373 0.89203 1.51547 0.91571 1.19912 0.89324 0.87906 0.94572 0.97222 1.23138 0.97491 0.82837 0.97200 1.87914 1.33826 1.15527 1.95002 1.22433 0.91967 0.90246 0.96356 1.22807 0.96568 0.93789 0.98093 1.62481 1.21072 1.02383 1.39100 1.21016 0.95450 0.92981 0.93230 1.20604 0.94108 0.95997 0.92649 1.22132 1.01409 0.94443 1.01065 1.22634 0.90479 0.96842 0.96600 1.67626 1.13485 1.31150 1.08242 1.22703 0.99351 0.89031 0.95414 1.22095 0.95521 0.99510 1.00347 0.92409 0.85850 0.94730 0.93555 0.90301 0.91313 0.95222 0.88823 0.94083 0.85255 0.83213 0.83101 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 11.37 55.43 0.63 -23.78 16 2 C 0.06 1.62 5.31 -17.82 -0.09 1.53 16 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.51 -13.30 8.03 -34.44 -0.28 -13.57 16 8 H 0.07 1.68 6.56 -52.49 -0.34 1.34 16 9 C 0.19 4.64 1.93 -68.75 -0.13 4.51 16 10 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 11 C 0.07 1.70 6.02 37.21 0.22 1.92 16 12 O -0.40 -9.15 10.83 -35.23 -0.38 -9.53 16 13 C 0.07 1.26 7.01 37.21 0.26 1.52 16 14 C 0.02 0.30 4.69 -3.71 -0.02 0.28 16 15 N -0.52 -10.89 4.67 -229.16 -1.07 -11.96 16 16 C 0.10 1.86 4.92 -4.98 -0.02 1.83 16 17 C -0.03 -0.39 4.15 -104.31 -0.43 -0.82 16 18 C -0.17 -2.36 8.04 -39.44 -0.32 -2.68 16 19 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 20 N -0.50 -7.05 10.36 -13.25 -0.14 -7.18 16 21 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 22 C -0.15 -2.19 9.82 -39.44 -0.39 -2.58 16 23 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.12 3.30 6.19 -51.93 -0.32 2.97 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.07 1.16 5.93 -51.93 -0.31 0.85 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.80 6.68 -51.93 -0.35 1.45 16 31 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 285.01 15.07 4.30 4.30 Total: -1.00 -28.43 285.01 -7.95 -36.38 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.68 Total: 2.49 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.59 Total: -6.05 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.58 Total: -42.93 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.38 Total: -9.53 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.43 -7.95 -36.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260174644.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.562 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds