Wall clock time and date at job start Mon Mar 30 2020 21:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46705 * 2 1 4 4 C 1.50692 * 109.46918 * 119.99606 * 2 1 3 5 5 H 1.08003 * 120.00199 * 120.00055 * 4 2 1 6 6 C 1.37876 * 120.00262 * 300.00056 * 4 2 1 7 7 N 1.31516 * 120.00134 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00228 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47120 * 60.00037 * 8 6 4 10 10 H 1.48492 * 109.47379 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47127 * 300.00335 * 8 6 4 12 12 N 1.46495 * 109.47275 * 240.00165 * 2 1 3 13 13 C 1.46503 * 119.99545 * 299.99954 * 12 2 1 14 14 C 1.38603 * 120.00404 * 119.99885 * 12 2 1 15 15 N 1.32783 * 118.96687 * 359.97438 * 14 12 2 16 16 C 1.32092 * 121.30871 * 179.97438 * 15 14 12 17 17 C 1.39198 * 118.84790 * 0.02562 * 16 15 14 18 18 O 1.34624 * 134.42483 * 180.02562 * 17 16 15 19 19 N 1.41421 * 109.29509 * 179.97438 * 18 17 16 20 20 C 1.29774 * 109.71513 * 359.97438 * 19 18 17 21 21 C 1.40503 * 118.36350 * 359.97438 * 17 16 15 22 22 N 1.32143 * 118.97004 * 179.97438 * 14 12 2 23 23 H 1.09000 * 109.47162 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47322 * 300.00281 * 1 2 3 25 25 H 1.09001 * 109.46792 * 60.00067 * 1 2 3 26 26 H 0.96995 * 120.00360 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47021 * 270.00083 * 13 12 2 28 28 H 1.08997 * 109.47628 * 30.00153 * 13 12 2 29 29 H 1.09000 * 109.47015 * 150.00369 * 13 12 2 30 30 H 1.08012 * 120.57593 * 179.97438 * 16 15 14 31 31 H 1.07996 * 126.27700 * 179.73316 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8259 -0.4204 5.2204 11 1 1.8257 -2.5200 4.0078 12 7 2.0184 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4279 14 6 2.8153 -0.0170 -2.1085 15 7 3.1230 1.2540 -1.8783 16 6 3.8793 1.9398 -2.7165 17 6 4.3573 1.3076 -3.8609 18 8 5.1278 1.6899 -4.8965 19 7 5.2887 0.6022 -5.7858 20 6 4.6467 -0.4313 -5.3341 21 6 4.0125 -0.0378 -4.0736 22 7 3.2449 -0.6598 -3.1801 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7081 1.1610 3.4843 27 1 2.4158 -2.7377 -0.9715 28 1 0.6905 -2.3002 -0.9846 29 1 1.6239 -2.2852 -2.5001 30 1 4.1220 2.9734 -2.5178 31 1 4.5869 -1.4019 -5.8039 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260178078.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:40 Heat of formation + Delta-G solvation = 114.644815 kcal Electronic energy + Delta-G solvation = -17671.790102 eV Core-core repulsion = 14764.396689 eV Total energy + Delta-G solvation = -2907.393413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.91553 -39.46102 -36.38064 -34.21062 -33.07630 -32.43695 -30.34136 -28.94369 -26.26021 -25.27754 -24.49727 -22.85059 -22.12435 -20.29515 -18.10739 -17.75982 -16.82261 -16.28845 -16.09201 -15.30264 -14.59809 -14.39212 -13.91145 -13.59954 -13.36735 -12.82003 -12.66308 -12.06309 -11.70743 -11.59759 -11.42820 -11.28577 -11.07147 -10.88694 -10.73005 -10.35724 -10.18741 -10.15992 -9.62694 -9.07944 -8.86052 -8.47995 -7.05230 -6.13629 -4.22577 0.53201 1.40641 2.07492 2.41024 3.24363 3.27393 3.29678 3.36066 3.89527 4.07859 4.13899 4.32789 4.54601 4.77034 5.17040 5.25459 5.36200 5.72729 5.83385 6.11490 6.16124 6.36814 6.67603 6.76415 6.94559 6.99942 7.05590 7.32218 7.50796 7.69609 7.91293 8.07687 8.30274 8.56882 8.84757 9.43784 10.90557 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.005684 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.009264 B = 4924.942335 C = 5051.294179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.073 0.927 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.549 5.549 13 C 0.107 3.893 14 C 0.559 3.441 15 N -0.500 5.500 16 C 0.227 3.773 17 C -0.119 4.119 18 O -0.081 6.081 19 N -0.272 5.272 20 C 0.110 3.890 21 C 0.111 3.889 22 N -0.537 5.537 23 H 0.031 0.969 24 H 0.097 0.903 25 H 0.012 0.988 26 H 0.265 0.735 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.181 0.819 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.168 -1.617 -10.587 11.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.091 0.909 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.261 5.261 13 C -0.037 4.037 14 C 0.203 3.797 15 N -0.221 5.221 16 C 0.047 3.953 17 C -0.182 4.182 18 O -0.092 6.092 19 N -0.014 5.014 20 C -0.093 4.093 21 C -0.035 4.035 22 N -0.266 5.266 23 H 0.050 0.950 24 H 0.115 0.885 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.198 0.802 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.094 -1.594 -10.531 11.091 hybrid contribution 0.387 -0.519 0.853 1.071 sum 3.481 -2.113 -9.678 10.499 Atomic orbital electron populations 1.22144 0.97986 0.99628 1.00975 1.19162 0.90915 0.94512 0.78811 0.90921 1.21279 1.32104 1.13194 0.90135 0.92301 1.24855 0.94845 0.94954 0.98877 1.69852 1.36124 1.22526 1.24018 0.86534 0.79223 0.79646 0.81874 1.20271 1.21102 1.20197 1.47130 1.47052 1.11109 1.20842 1.21458 1.00591 0.81010 1.00621 1.19317 0.89075 0.85031 0.86241 1.68213 1.16079 1.08226 1.29614 1.22313 0.88958 0.99812 0.84215 1.21565 1.03135 0.97708 0.95746 1.89061 1.61125 1.30462 1.28542 1.79803 1.16873 0.94760 1.09941 1.25879 0.92333 0.99540 0.91537 1.21633 0.97335 0.89493 0.94991 1.67228 1.16945 1.38453 1.03999 0.94957 0.88472 0.96920 0.92523 0.93417 0.90914 0.91821 0.80221 0.76794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.95 37.16 0.33 -3.08 16 2 C 0.27 6.43 2.66 -69.09 -0.18 6.25 16 3 H 0.07 1.93 6.75 -51.93 -0.35 1.58 16 4 C -0.53 -13.81 8.37 -34.44 -0.29 -14.10 16 5 H 0.06 1.55 7.65 -52.48 -0.40 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -23.99 11.32 55.43 0.63 -23.36 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.55 -11.76 2.86 -177.56 -0.51 -12.27 16 13 C 0.11 1.94 9.68 59.85 0.58 2.52 16 14 C 0.56 11.45 8.18 -322.60 -2.64 8.82 16 15 N -0.50 -9.92 8.79 -13.78 -0.12 -10.04 16 16 C 0.23 3.61 11.35 -17.08 -0.19 3.41 16 17 C -0.12 -1.90 7.54 -38.37 -0.29 -2.19 16 18 O -0.08 -1.25 12.06 8.20 0.10 -1.15 16 19 N -0.27 -3.81 12.82 31.93 0.41 -3.40 16 20 C 0.11 1.36 12.32 -15.10 -0.19 1.18 16 21 C 0.11 1.79 7.55 -83.09 -0.63 1.16 16 22 N -0.54 -9.89 9.15 -10.73 -0.10 -9.99 16 23 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 24 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 29 H 0.06 1.04 7.33 -51.93 -0.38 0.66 16 30 H 0.18 2.13 8.06 -52.48 -0.42 1.70 16 31 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 271.33 15.07 4.09 4.09 Total: -1.00 -29.22 271.33 -7.07 -36.29 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.95 Total: -1.33 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -3.59 Total: 5.65 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.31 Total: -59.06 kcal Atomic # 8 Polarization: -1.25 SS G_CDS: 0.10 Total: -1.15 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.22 -7.07 -36.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260178078.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.934 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds