Wall clock time and date at job start Mon Mar 30 2020 21:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00404 * 2 1 4 4 H 1.48504 * 109.46590 * 265.13313 * 3 2 1 5 5 H 1.48491 * 109.47072 * 25.12928 * 3 2 1 6 6 H 1.48494 * 109.47193 * 145.13886 * 3 2 1 7 7 C 1.37878 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00328 * 350.01046 * 7 2 1 9 9 C 1.50707 * 119.99983 * 170.01173 * 7 2 1 10 10 C 1.50704 * 115.54963 * 88.77027 * 9 7 2 11 11 C 1.38253 * 120.00001 * 234.70884 * 10 9 7 12 12 C 1.38218 * 119.99702 * 180.25691 * 11 10 9 13 13 C 1.38261 * 119.99726 * 359.51055 * 12 11 10 14 14 C 1.38200 * 120.00326 * 0.44219 * 13 12 11 15 15 C 1.50701 * 120.00210 * 179.83210 * 14 13 12 16 16 H 1.09004 * 109.47271 * 204.97932 * 15 14 13 17 17 O 1.42900 * 109.46979 * 324.97960 * 15 14 13 18 18 C 1.53005 * 109.47071 * 84.98256 * 15 14 13 19 19 O 1.42901 * 109.46781 * 175.00371 * 18 15 14 20 20 C 1.38213 * 119.99621 * 54.68393 * 10 9 7 21 21 C 1.52995 * 117.49894 * 234.44561 * 9 7 2 22 22 C 1.52992 * 117.49809 * 303.10563 * 9 7 2 23 23 H 0.97001 * 119.99341 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.00182 * 359.97438 * 11 10 9 25 25 H 1.08000 * 119.99978 * 179.71983 * 12 11 10 26 26 H 1.08006 * 119.99602 * 180.27905 * 13 12 11 27 27 H 0.96700 * 114.00067 * 60.00300 * 17 15 14 28 28 H 1.09002 * 109.46618 * 294.99835 * 18 15 14 29 29 H 1.08995 * 109.47027 * 55.00178 * 18 15 14 30 30 H 0.96698 * 113.99167 * 180.02562 * 19 18 15 31 31 H 1.08002 * 120.00351 * 359.97438 * 20 10 9 32 32 H 1.09006 * 117.49517 * 215.00454 * 21 9 7 33 33 H 1.09000 * 117.50076 * 0.02562 * 21 9 7 34 34 H 1.09004 * 117.49963 * 359.97092 * 22 9 7 35 35 H 1.09003 * 117.50411 * 144.97407 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5996 1.9868 -1.3951 5 1 1.3991 2.6801 0.5945 6 1 3.4916 1.4719 0.8002 7 6 2.0044 -1.1941 0.0005 8 1 1.4767 -2.1222 0.1632 9 6 3.4944 -1.2043 -0.2258 10 6 4.3410 -1.0611 1.0127 11 6 5.2920 -0.0605 1.0881 12 6 6.0721 0.0674 2.2219 13 6 5.8943 -0.7989 3.2846 14 6 4.9429 -1.7985 3.2097 15 6 4.7517 -2.7451 4.3666 16 1 4.3287 -3.6818 4.0035 17 8 6.0137 -3.0009 4.9862 18 6 3.8002 -2.1175 5.3872 19 8 3.5272 -3.0599 6.4261 20 6 4.1662 -1.9298 2.0734 21 6 4.0320 -2.0913 -1.3505 22 6 4.0172 -0.5697 -1.5161 23 1 -0.4849 0.8401 -0.0004 24 1 5.4286 0.6183 0.2593 25 1 6.8182 0.8462 2.2790 26 1 6.5008 -0.6961 4.1724 27 1 6.4489 -2.2103 5.3335 28 1 4.2623 -1.2281 5.8157 29 1 2.8687 -1.8410 4.8934 30 1 2.9287 -2.7291 7.1098 31 1 3.4226 -2.7109 2.0148 32 1 4.9981 -2.5715 -1.1945 33 1 3.3081 -2.6673 -1.9270 34 1 3.2835 -0.1453 -2.2015 35 1 4.9733 -0.0484 -1.4691 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260233384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:50 Heat of formation + Delta-G solvation = -75.367033 kcal Electronic energy + Delta-G solvation = -18054.095245 eV Core-core repulsion = 15209.709892 eV Total energy + Delta-G solvation = -2844.385352 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90799 -39.11991 -37.56896 -36.62686 -34.28173 -32.66441 -31.41093 -29.04362 -27.90896 -24.69166 -23.91023 -23.29556 -22.22042 -20.57796 -18.91873 -18.26156 -17.87540 -17.12130 -16.94129 -16.73040 -15.81711 -15.60554 -15.33546 -14.81751 -14.66985 -14.33220 -14.05498 -13.90551 -13.59132 -13.11929 -12.89258 -12.83108 -12.43688 -12.07756 -11.87397 -11.82506 -11.57648 -11.22600 -11.12366 -11.03057 -10.69017 -10.44754 -9.61165 -9.28121 -8.32945 -6.39344 0.44473 0.60741 1.35059 1.39862 1.53288 2.37833 2.77657 3.02747 3.20415 3.23085 3.48107 3.89716 3.99636 4.03898 4.16821 4.21048 4.28543 4.34581 4.42692 4.53558 4.58079 4.68462 4.79430 4.83342 5.02242 5.08782 5.20580 5.31948 5.43750 5.58105 5.61466 5.77714 5.91106 6.20012 6.28411 6.67460 6.75831 6.83611 7.30216 8.81734 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.007653 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.889033 B = 3657.916798 C = 4034.745885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.026 3.974 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.304 1.304 6 H -0.216 1.216 7 C -0.485 4.485 8 H 0.031 0.969 9 C 0.006 3.994 10 C -0.034 4.034 11 C -0.135 4.135 12 C -0.117 4.117 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.160 3.840 16 H 0.093 0.907 17 O -0.558 6.558 18 C 0.054 3.946 19 O -0.583 6.583 20 C -0.110 4.110 21 C -0.161 4.161 22 C -0.188 4.188 23 H 0.265 0.735 24 H 0.123 0.877 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.387 0.613 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.397 0.603 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.547 1.739 8.915 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.172 4.172 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.231 1.231 6 H -0.139 1.139 7 C -0.522 4.522 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.035 4.035 11 C -0.153 4.153 12 C -0.135 4.135 13 C -0.141 4.141 14 C -0.125 4.125 15 C 0.100 3.900 16 H 0.111 0.889 17 O -0.366 6.366 18 C -0.024 4.024 19 O -0.392 6.392 20 C -0.128 4.128 21 C -0.198 4.198 22 C -0.225 4.225 23 H 0.074 0.926 24 H 0.141 0.859 25 H 0.170 0.830 26 H 0.171 0.829 27 H 0.237 0.763 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.247 0.753 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.646 0.858 8.399 16.047 hybrid contribution -1.149 1.462 0.008 1.859 sum 12.498 2.320 8.407 15.240 Atomic orbital electron populations 1.70067 1.08438 1.28123 1.51872 1.25788 0.95116 1.02926 0.93360 0.86111 0.80894 0.78116 0.80024 1.18945 1.23102 1.13876 1.20313 0.89631 0.93063 1.49236 0.95093 1.18097 0.92321 1.03215 0.85871 1.19639 0.93739 0.94651 0.95451 1.21298 0.96271 0.98009 0.99687 1.21356 0.99523 0.99811 0.92774 1.21055 0.98379 0.94637 1.00026 1.20345 0.98297 0.98370 0.95455 1.20519 0.83932 0.97002 0.88534 0.88933 1.86612 1.33629 1.38317 1.78036 1.22831 0.98691 0.91787 0.89141 1.86458 1.71078 1.43381 1.38260 1.20735 0.98951 0.99791 0.93354 1.22879 1.01514 0.92635 1.02820 1.23050 1.01939 0.96043 1.01451 0.92593 0.85922 0.83012 0.82905 0.76334 0.90861 0.93374 0.75276 0.88085 0.88295 0.90256 0.90780 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 2 C 0.03 1.50 5.45 84.65 0.46 1.96 16 3 Si 0.92 43.04 25.44 68.60 1.75 44.79 16 4 H -0.26 -11.75 7.09 99.48 0.71 -11.05 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.22 -9.03 4.60 99.48 0.46 -8.57 16 7 C -0.49 -27.33 9.12 25.60 0.23 -27.09 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.26 1.11 -53.67 -0.06 0.20 16 10 C -0.03 -1.38 4.65 -19.87 -0.09 -1.47 16 11 C -0.13 -4.56 7.36 22.27 0.16 -4.40 16 12 C -0.12 -3.14 10.05 22.27 0.22 -2.91 16 13 C -0.12 -3.13 9.33 22.27 0.21 -2.92 16 14 C -0.12 -3.83 5.00 -19.87 -0.10 -3.93 16 15 C 0.16 4.49 3.49 29.85 0.10 4.59 16 16 H 0.09 2.94 8.05 -2.38 -0.02 2.92 16 17 O -0.56 -14.33 13.10 -144.34 -1.89 -16.22 16 18 C 0.05 1.32 6.66 71.98 0.48 1.80 16 19 O -0.58 -14.20 13.62 -144.34 -1.97 -16.17 16 20 C -0.11 -4.25 9.09 22.27 0.20 -4.05 16 21 C -0.16 -6.41 9.94 30.62 0.30 -6.11 16 22 C -0.19 -7.50 7.36 30.61 0.23 -7.28 16 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.12 3.91 6.23 -2.91 -0.02 3.89 16 25 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 26 H 0.15 2.55 6.61 -2.91 -0.02 2.53 16 27 H 0.39 6.44 7.39 -74.06 -0.55 5.89 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.40 5.72 9.12 -74.06 -0.68 5.04 16 31 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 32 H 0.10 3.41 8.14 -2.38 -0.02 3.40 16 33 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.07 3.18 7.57 -2.38 -0.02 3.16 16 35 H 0.11 3.55 6.58 -2.39 -0.02 3.53 16 Total: -1.00 -71.07 290.15 0.18 -70.89 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.36 Total: 26.80 kcal Atomic # 6 Polarization: -53.96 SS G_CDS: 2.36 Total: -51.60 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -3.86 Total: -32.38 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.75 Total: 44.79 kcal Total: -71.07 0.18 -70.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds