Wall clock time and date at job start Mon Mar 30 2020 21:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31787 * 118.54973 * 2 1 4 4 C 1.32588 * 120.66246 * 179.97438 * 3 2 1 5 5 O 1.34055 * 136.38866 * 180.02562 * 4 3 2 6 6 N 1.20995 * 112.97640 * 180.02562 * 5 4 3 7 7 C 1.30194 * 113.37702 * 359.72621 * 6 5 4 8 8 C 1.41121 * 118.36372 * 0.04327 * 4 3 2 9 9 C 1.39715 * 119.07296 * 359.97438 * 8 4 3 10 10 N 1.38037 * 120.95023 * 179.97438 * 9 8 4 11 11 C 1.46903 * 111.00411 * 303.95352 * 10 9 8 12 12 C 1.46904 * 110.99526 * 179.97438 * 10 9 8 13 13 C 1.50698 * 109.46806 * 190.00042 * 12 10 9 14 14 H 1.08006 * 120.00362 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99924 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00039 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99997 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.47007 * 90.00361 * 17 15 13 19 19 H 1.48502 * 109.47390 * 210.00175 * 17 15 13 20 20 H 1.48494 * 109.47164 * 330.00385 * 17 15 13 21 21 N 1.31980 * 118.55031 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.47399 * 269.97369 * 1 2 3 23 23 H 1.09007 * 109.47360 * 29.97708 * 1 2 3 24 24 H 1.09001 * 109.47407 * 149.97463 * 1 2 3 25 25 H 1.08000 * 127.37072 * 180.34503 * 7 6 5 26 26 H 1.08998 * 109.46523 * 60.00039 * 11 10 9 27 27 H 1.08993 * 109.46921 * 180.02562 * 11 10 9 28 28 H 1.08996 * 109.46567 * 300.00563 * 11 10 9 29 29 H 1.08994 * 109.47432 * 310.00316 * 12 10 9 30 30 H 1.09002 * 109.47058 * 70.00720 * 12 10 9 31 31 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1368 1.1576 0.0000 4 6 3.4618 1.2065 0.0005 5 8 4.3976 2.1663 0.0011 6 7 5.5249 1.7268 0.0009 7 6 5.5721 0.4257 0.0059 8 6 4.1775 -0.0097 0.0001 9 6 3.4694 -1.2142 -0.0003 10 7 4.1302 -2.4261 -0.0012 11 6 5.0543 -2.5212 -1.1392 12 6 3.1780 -3.5447 -0.0008 13 6 3.9181 -4.8343 0.2449 14 1 4.9887 -4.8239 0.3871 15 6 3.2285 -6.0274 0.2883 16 7 3.8745 -7.1528 0.5023 17 14 1.3768 -6.0454 0.0433 18 1 1.0701 -6.2068 -1.4008 19 1 0.7877 -7.1767 0.8038 20 1 0.8004 -4.7671 0.5318 21 7 2.1377 -1.1593 -0.0005 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 6.4536 -0.1982 0.0120 26 1 5.7918 -1.7210 -1.0760 27 1 5.5612 -3.4858 -1.1159 28 1 4.4951 -2.4272 -2.0700 29 1 2.4401 -3.3935 0.7870 30 1 2.6741 -3.5933 -0.9661 31 1 3.3893 -7.9922 0.5332 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260239132.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:53 Heat of formation + Delta-G solvation = 103.667341 kcal Electronic energy + Delta-G solvation = -17850.507200 eV Core-core repulsion = 14942.637768 eV Total energy + Delta-G solvation = -2907.869432 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.91460 -41.93534 -38.99286 -35.20843 -34.63071 -34.29756 -33.00765 -30.40949 -29.56042 -27.70635 -26.27308 -23.87702 -23.64192 -22.38494 -20.37820 -19.26574 -19.03614 -18.96825 -17.77516 -16.67056 -16.49556 -15.87571 -15.49013 -15.37067 -15.06399 -14.89467 -14.41685 -13.71296 -13.38654 -13.32896 -13.13046 -13.02877 -12.77939 -12.65362 -12.39391 -12.11586 -11.82061 -11.61453 -11.28354 -10.84119 -10.74187 -10.56865 -9.50442 -8.32181 -6.38093 -0.69959 -0.25262 0.91585 1.00332 1.36449 1.39732 1.51899 2.19227 2.33920 2.42031 2.65033 3.01776 3.07096 3.18900 3.33832 3.61961 3.85573 4.23153 4.35049 4.61516 4.66541 4.70251 4.72116 4.81492 4.82568 4.96538 5.22837 5.32115 5.40373 5.75468 5.91060 6.33773 6.66188 6.77262 6.99440 7.26216 8.82730 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027826 B = 0.007289 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.021237 B = 3840.733452 C = 4741.211758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.385 3.615 3 N -0.538 5.538 4 C 0.263 3.737 5 O 0.069 5.931 6 N -0.337 5.337 7 C 0.093 3.907 8 C -0.323 4.323 9 C 0.444 3.556 10 N -0.467 5.467 11 C 0.038 3.962 12 C 0.185 3.815 13 C -0.529 4.529 14 H 0.052 0.948 15 C 0.021 3.979 16 N -0.938 5.938 17 Si 0.935 3.065 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.247 1.247 21 N -0.586 5.586 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.242 0.758 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.010 0.990 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 14.409 -3.336 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.116 3.884 3 N -0.268 5.268 4 C 0.074 3.926 5 O 0.021 5.979 6 N -0.049 5.049 7 C -0.097 4.097 8 C -0.335 4.335 9 C 0.197 3.803 10 N -0.180 5.180 11 C -0.106 4.106 12 C 0.060 3.940 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.178 4.178 16 N -0.578 5.578 17 Si 0.758 3.242 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.170 1.170 21 N -0.311 5.311 22 H 0.127 0.873 23 H 0.129 0.871 24 H 0.116 0.884 25 H 0.258 0.742 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.320 15.217 -2.913 15.845 hybrid contribution -0.271 -1.264 -0.325 1.333 sum -3.590 13.953 -3.238 14.767 Atomic orbital electron populations 1.20848 0.81468 1.05834 1.05807 1.24098 0.99462 0.80270 0.84535 1.67256 1.04446 1.30930 1.24180 1.21841 0.90721 0.86617 0.93431 1.84850 1.08652 1.31260 1.73165 1.73671 0.97830 1.14186 1.19164 1.26172 0.96606 0.90013 0.96932 1.21310 0.96870 0.95386 1.19902 1.19754 0.87650 0.89545 0.83390 1.58379 1.19187 1.00186 1.40203 1.22581 0.95059 1.05270 0.87703 1.19940 0.90541 0.86605 0.96943 1.21164 0.95539 0.90299 1.49738 0.92950 1.25661 1.03246 0.94861 0.94064 1.70006 1.38242 0.98940 1.50594 0.85883 0.80149 0.78996 0.79146 1.19039 1.20750 1.17016 1.68802 1.08067 1.30428 1.23814 0.87311 0.87100 0.88371 0.74151 0.88247 0.89313 0.93867 0.94259 0.97166 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.61 10.29 71.23 0.73 -0.88 16 2 C 0.38 11.56 7.62 138.69 1.06 12.62 16 3 N -0.54 -16.77 10.34 -301.27 -3.11 -19.88 16 4 C 0.26 8.35 8.82 85.29 0.75 9.10 16 5 O 0.07 2.06 11.11 71.40 0.79 2.85 16 6 N -0.34 -9.23 11.96 -53.18 -0.64 -9.86 16 7 C 0.09 2.33 11.23 86.98 0.98 3.31 16 8 C -0.32 -10.15 5.99 -20.17 -0.12 -10.27 16 9 C 0.44 15.97 6.39 133.27 0.85 16.82 16 10 N -0.47 -18.12 4.77 -730.69 -3.49 -21.60 16 11 C 0.04 1.22 9.11 127.69 1.16 2.38 16 12 C 0.19 8.44 3.07 85.56 0.26 8.70 16 13 C -0.53 -28.47 9.01 25.60 0.23 -28.24 16 14 H 0.05 3.06 7.37 -2.91 -0.02 3.04 16 15 C 0.02 1.15 5.47 84.65 0.46 1.61 16 16 N -0.94 -55.67 13.96 21.45 0.30 -55.37 16 17 Si 0.93 41.96 27.47 68.60 1.88 43.84 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 20 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 21 N -0.59 -20.94 8.69 -185.42 -1.61 -22.55 16 22 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.24 4.19 7.19 -2.91 -0.02 4.17 16 26 H 0.10 2.37 5.55 -2.39 -0.01 2.36 16 27 H 0.09 3.12 6.76 -2.39 -0.02 3.11 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.88 6.61 -2.39 -0.02 1.86 16 30 H 0.01 0.47 7.55 -2.39 -0.02 0.46 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -65.58 267.95 1.61 -63.97 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.11 Total: 3.46 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.37 Total: 15.15 kcal Atomic # 7 Polarization: -120.72 SS G_CDS: -8.55 Total: -129.27 kcal Atomic # 8 Polarization: 2.06 SS G_CDS: 0.79 Total: 2.85 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Total: -65.58 1.61 -63.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260239132.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.637 kcal (2) G-P(sol) polarization free energy of solvation -65.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds