Wall clock time and date at job start Mon Mar 30 2020 21:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46700 * 2 1 4 4 C 1.50699 * 109.46996 * 119.99294 * 2 1 3 5 5 H 1.07997 * 119.99721 * 120.00082 * 4 2 1 6 6 C 1.37876 * 120.00448 * 300.00082 * 4 2 1 7 7 N 1.31521 * 119.99952 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00088 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47151 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46973 * 120.00331 * 8 6 4 11 11 H 1.48495 * 109.47345 * 240.00427 * 8 6 4 12 12 N 1.46892 * 109.46994 * 239.99800 * 2 1 3 13 13 C 1.46901 * 111.00270 * 292.21417 * 12 2 1 14 14 C 1.38040 * 110.99757 * 168.26498 * 12 2 1 15 15 N 1.33286 * 120.95763 * 15.38610 * 14 12 2 16 16 C 1.31975 * 120.90692 * 179.77896 * 15 14 12 17 17 N 1.31789 * 122.90302 * 0.48597 * 16 15 14 18 18 C 1.32580 * 120.65887 * 359.77699 * 17 16 15 19 19 O 1.34067 * 136.39190 * 179.97438 * 18 17 16 20 20 N 1.20992 * 112.97719 * 179.97438 * 19 18 17 21 21 C 1.30189 * 113.38030 * 0.02562 * 20 19 18 22 22 C 1.39710 * 120.95460 * 195.67102 * 14 12 2 23 23 H 1.08997 * 109.47331 * 186.57298 * 1 2 3 24 24 H 1.09005 * 109.47151 * 306.57767 * 1 2 3 25 25 H 1.08998 * 109.47267 * 66.57140 * 1 2 3 26 26 H 0.96996 * 119.99566 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.46504 * 60.00406 * 13 12 2 28 28 H 1.09000 * 109.47278 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.46994 * 300.00897 * 13 12 2 30 30 H 1.08000 * 118.55211 * 180.28831 * 16 15 14 31 31 H 1.08000 * 127.37217 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5883 1.1315 6 6 1.6993 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3214 -1.1200 4.0080 9 1 3.1464 -2.2867 3.6040 10 1 3.1466 -0.1869 4.8166 11 1 1.1661 -1.5864 4.8161 12 7 2.0196 -0.6925 -1.1994 13 6 1.7063 -2.1266 -1.1441 14 6 3.3742 -0.4884 -1.3701 15 7 4.1267 -0.0149 -0.3771 16 6 5.4224 0.1758 -0.5400 17 7 6.0458 -0.0745 -1.6739 18 6 5.3818 -0.5434 -2.7213 19 8 5.6786 -0.8966 -3.9800 20 7 4.7156 -1.2846 -4.6012 21 6 3.6137 -1.2703 -3.9081 22 6 3.9946 -0.7667 -2.5905 23 1 -0.3634 -1.0209 0.1176 24 1 -0.3634 0.6124 0.8253 25 1 -0.3634 0.4086 -0.9429 26 1 0.7088 1.1615 3.4844 27 1 0.6264 -2.2603 -1.0797 28 1 2.0803 -2.6152 -2.0438 29 1 2.1799 -2.5685 -0.2674 30 1 5.9967 0.5567 0.2915 31 1 2.6287 -1.5674 -4.2366 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253079.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:57 Heat of formation + Delta-G solvation = 114.914103 kcal Electronic energy + Delta-G solvation = -18259.074608 eV Core-core repulsion = 15351.692873 eV Total energy + Delta-G solvation = -2907.381736 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.82072 -41.72766 -39.01197 -35.29450 -34.43316 -33.98246 -32.27786 -30.64155 -27.81885 -27.19052 -26.01530 -25.19742 -23.23120 -21.69431 -20.24241 -19.04466 -18.91793 -18.45523 -17.92847 -16.75671 -15.97253 -15.82579 -15.73758 -15.16883 -14.93710 -14.84854 -14.11091 -13.40976 -13.15960 -13.02398 -12.81773 -12.58490 -12.49070 -12.27408 -12.10093 -11.97790 -11.88609 -11.26732 -11.16007 -10.57092 -10.41977 -10.29724 -9.36861 -8.01023 -6.10067 -0.60545 -0.09821 1.01822 1.12025 1.41801 1.46485 1.53764 2.45754 2.49539 2.63672 2.85087 3.24818 3.27294 3.37873 3.49872 3.79590 4.12077 4.43574 4.64415 4.76274 4.82795 4.99226 5.04238 5.07606 5.12492 5.44254 5.59531 5.74147 5.88606 6.07395 6.24748 6.32410 6.87656 6.93482 7.12948 7.54370 9.02881 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030889 B = 0.007733 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.258911 B = 3620.153747 C = 4122.889407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.219 3.781 3 H 0.012 0.988 4 C -0.499 4.499 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.919 5.919 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.285 1.285 12 N -0.479 5.479 13 C 0.041 3.959 14 C 0.445 3.555 15 N -0.547 5.547 16 C 0.356 3.644 17 N -0.536 5.536 18 C 0.248 3.752 19 O 0.063 5.937 20 N -0.339 5.339 21 C 0.096 3.904 22 C -0.304 4.304 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.258 0.742 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.035 0.965 30 H 0.238 0.762 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 -4.662 -8.551 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 H 0.030 0.970 4 C -0.538 4.538 5 H 0.069 0.931 6 C -0.175 4.175 7 N -0.559 5.559 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.195 5.195 13 C -0.103 4.103 14 C 0.198 3.802 15 N -0.268 5.268 16 C 0.067 3.933 17 N -0.264 5.264 18 C 0.058 3.942 19 O 0.015 5.985 20 N -0.051 5.051 21 C -0.094 4.094 22 C -0.315 4.315 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.253 0.747 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.694 -4.372 -9.371 10.980 hybrid contribution -0.140 -0.362 1.813 1.854 sum 3.554 -4.734 -7.558 9.600 Atomic orbital electron populations 1.21648 0.96001 1.00565 0.99648 1.19149 0.92810 0.92872 0.83863 0.97036 1.21432 1.29371 1.11733 0.91280 0.93127 1.25386 0.95502 0.95583 1.01062 1.69999 1.38227 1.24096 1.23597 0.85732 0.77900 0.78556 0.80643 1.19965 1.21333 1.21072 1.59515 1.06004 1.13593 1.40431 1.22425 1.03666 0.82872 1.01378 1.19795 0.90007 0.84592 0.85762 1.69417 1.07509 1.19264 1.30613 1.25806 0.87727 0.87579 0.92236 1.67438 1.40884 1.19700 0.98379 1.21901 0.89645 0.94067 0.88577 1.84836 1.31167 1.65320 1.17184 1.73658 0.96010 1.16769 1.18644 1.26183 0.99640 0.96560 0.87051 1.21502 0.96684 1.15345 0.97985 0.93986 0.92036 0.94637 0.93230 0.88811 0.89624 0.94661 0.74665 0.73842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 8.67 71.98 0.62 -4.58 16 2 C 0.22 10.02 1.97 44.17 0.09 10.11 16 3 H 0.01 0.63 7.79 -2.39 -0.02 0.61 16 4 C -0.50 -24.67 6.22 25.60 0.16 -24.51 16 5 H 0.05 2.54 6.04 -2.91 -0.02 2.53 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.92 -50.02 11.40 21.45 0.24 -49.78 16 8 Si 0.94 42.00 29.54 68.60 2.03 44.03 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 N -0.48 -18.01 4.70 -706.43 -3.32 -21.33 16 13 C 0.04 1.31 8.83 127.69 1.13 2.43 16 14 C 0.44 16.76 5.81 133.26 0.77 17.53 16 15 N -0.55 -21.98 7.83 -197.58 -1.55 -23.53 16 16 C 0.36 11.93 12.22 180.83 2.21 14.14 16 17 N -0.54 -18.09 10.46 -313.46 -3.28 -21.37 16 18 C 0.25 8.32 8.82 85.29 0.75 9.07 16 19 O 0.06 1.98 11.11 71.29 0.79 2.77 16 20 N -0.34 -9.53 11.96 -53.18 -0.64 -10.17 16 21 C 0.10 2.43 11.94 86.98 1.04 3.47 16 22 C -0.30 -9.89 6.09 -20.17 -0.12 -10.01 16 23 H 0.04 1.70 6.92 -2.39 -0.02 1.68 16 24 H 0.06 3.02 6.28 -2.38 -0.01 3.01 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 27 H 0.09 2.74 6.68 -2.39 -0.02 2.72 16 28 H 0.09 2.09 7.28 -2.39 -0.02 2.08 16 29 H 0.03 1.26 6.03 -2.39 -0.01 1.25 16 30 H 0.24 6.08 8.06 -2.91 -0.02 6.06 16 31 H 0.25 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -59.79 263.77 2.55 -57.24 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.17 Total: 2.84 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 7.10 Total: 19.31 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -8.54 Total: -126.18 kcal Atomic # 8 Polarization: 1.98 SS G_CDS: 0.79 Total: 2.77 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -59.79 2.55 -57.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253079.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.152 kcal (2) G-P(sol) polarization free energy of solvation -59.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds