Wall clock time and date at job start Mon Mar 30 2020 21:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31962 * 120.62577 * 2 1 4 4 C 1.32839 * 121.33547 * 180.30259 * 3 2 1 5 5 N 1.38430 * 118.91596 * 179.74562 * 4 3 2 6 6 C 1.46499 * 119.99971 * 359.73428 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 N 1.32255 * 122.16721 * 359.46954 * 4 3 2 16 16 C 1.32747 * 120.40366 * 0.27664 * 15 4 3 17 17 C 1.40011 * 120.62753 * 179.81649 * 2 1 3 18 18 N 1.35133 * 134.16655 * 359.97438 * 17 2 1 19 19 N 1.28740 * 110.02211 * 179.97438 * 18 17 2 20 20 N 1.36756 * 134.77674 * 179.97438 * 16 15 4 21 21 C 1.46496 * 126.61555 * 0.02562 * 20 16 15 22 22 H 1.09001 * 109.47051 * 270.17951 * 1 2 3 23 23 H 1.08994 * 109.47118 * 30.18361 * 1 2 3 24 24 H 1.08997 * 109.46845 * 150.18313 * 1 2 3 25 25 H 0.97000 * 119.99609 * 179.72762 * 5 4 3 26 26 H 1.09002 * 109.47391 * 59.99776 * 6 5 4 27 27 H 1.09001 * 109.46813 * 299.99832 * 6 5 4 28 28 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47475 * 90.00144 * 21 20 16 30 30 H 1.09000 * 109.47246 * 210.00506 * 21 20 16 31 31 H 1.09001 * 109.47567 * 330.00194 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1793 1.1355 0.0000 4 6 3.5075 1.1520 -0.0060 5 7 4.1618 2.3719 -0.0111 6 6 3.3899 3.6171 -0.0157 7 6 4.3329 4.7926 -0.0200 8 1 5.4003 4.6286 -0.0199 9 6 3.8328 6.0775 -0.0253 10 7 2.5329 6.2772 -0.0260 11 14 5.0016 7.5346 -0.0315 12 1 6.4035 7.0447 -0.0302 13 1 4.7651 8.3537 -1.2474 14 1 4.7655 8.3637 1.1777 15 7 4.2255 0.0413 -0.0019 16 6 3.6287 -1.1444 0.0030 17 6 2.2203 -1.2048 0.0039 18 7 1.8659 -2.5088 0.0085 19 7 2.9175 -3.2514 0.0101 20 7 4.0627 -2.4413 0.0075 21 6 5.4551 -2.8966 0.0087 22 1 -0.3633 0.0032 1.0277 23 1 -0.3633 0.8883 -0.5167 24 1 -0.3633 -0.8916 -0.5110 25 1 5.1313 2.4022 -0.0115 26 1 2.7621 3.6587 0.8744 27 1 2.7614 3.6516 -0.9056 28 1 2.1811 7.1811 -0.0294 29 1 5.8009 -3.0059 1.0366 30 1 5.5237 -3.8573 -0.5018 31 1 6.0770 -2.1656 -0.5079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260267778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:00 Heat of formation + Delta-G solvation = 139.873396 kcal Electronic energy + Delta-G solvation = -17229.272453 eV Core-core repulsion = 14355.265785 eV Total energy + Delta-G solvation = -2874.006668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.108 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.10388 -39.32686 -35.55169 -34.82619 -33.27279 -32.58590 -30.50768 -28.47399 -27.51464 -26.94811 -23.52211 -23.43289 -21.94574 -20.75591 -18.35711 -18.07386 -17.10933 -16.35438 -15.89778 -15.16983 -14.83220 -14.54942 -13.52213 -13.44251 -13.29482 -13.06447 -13.03680 -12.33629 -12.20600 -12.16663 -12.06681 -11.87789 -11.05492 -10.99050 -10.93260 -10.66498 -10.30352 -9.65176 -9.50363 -9.17524 -8.84534 -8.66559 -7.42094 -6.27110 -4.34179 0.61807 1.51363 1.99023 2.36604 3.18657 3.25842 3.28655 3.44618 4.06228 4.15258 4.24076 4.30355 4.36531 4.73648 5.06698 5.10152 5.10674 5.33994 5.41151 5.68496 5.70328 5.87840 5.94839 6.35095 6.49567 7.00178 7.23275 7.35161 7.47436 7.59456 7.82154 8.05944 8.25454 8.58675 8.84274 9.32159 10.82841 Molecular weight = 248.11amu Principal moments of inertia in cm(-1) A = 0.036504 B = 0.005043 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.864647 B = 5551.285083 C = 6292.399628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.325 3.675 3 N -0.548 5.548 4 C 0.611 3.389 5 N -0.652 5.652 6 C 0.258 3.742 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.067 3.933 10 N -0.883 5.883 11 Si 0.905 3.095 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.281 1.281 15 N -0.608 5.608 16 C 0.363 3.637 17 C -0.192 4.192 18 N -0.175 5.175 19 N -0.032 5.032 20 N -0.402 5.402 21 C 0.109 3.891 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.410 0.590 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.267 0.733 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 -13.511 -0.017 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.159 3.841 3 N -0.272 5.272 4 C 0.251 3.749 5 N -0.280 5.280 6 C 0.138 3.862 7 C -0.586 4.586 8 H 0.083 0.917 9 C -0.137 4.137 10 N -0.520 5.520 11 Si 0.732 3.268 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.207 1.207 15 N -0.346 5.346 16 C 0.110 3.890 17 C -0.326 4.326 18 N -0.056 5.056 19 N -0.014 5.014 20 N -0.200 5.200 21 C -0.032 4.032 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.247 0.753 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.979 -13.628 -0.014 13.663 hybrid contribution 1.314 0.979 0.029 1.639 sum 2.293 -12.649 0.015 12.856 Atomic orbital electron populations 1.20866 0.86842 1.04566 1.04265 1.21151 0.97121 0.83765 0.82072 1.68038 1.07974 1.27957 1.23220 1.19317 0.84416 0.86030 0.85127 1.45411 1.09906 1.01957 1.70772 1.19343 0.91596 0.76824 0.98467 1.21224 0.93191 0.90465 1.53745 0.91679 1.24900 0.95386 0.98962 0.94453 1.69967 1.11355 1.22111 1.48574 0.86331 0.80731 0.81875 0.77831 1.19595 1.20705 1.20700 1.66806 1.39669 0.94762 1.33316 1.19013 0.90077 0.86961 0.92997 1.20781 0.93963 0.93664 1.24147 1.74476 1.20740 1.01171 1.09225 1.81681 0.85397 1.14290 1.20014 1.49666 1.08285 1.01527 1.60508 1.21886 0.75682 1.01965 1.03695 0.88872 0.89034 0.89423 0.75327 0.94694 0.94704 0.92354 0.90549 0.88984 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.23 36.01 0.37 -0.98 16 2 C 0.32 5.52 6.87 -81.87 -0.56 4.96 16 3 N -0.55 -10.90 9.47 -9.85 -0.09 -10.99 16 4 C 0.61 12.47 8.41 -322.63 -2.71 9.75 16 5 N -0.65 -13.76 5.70 -63.46 -0.36 -14.13 16 6 C 0.26 6.37 5.38 -5.19 -0.03 6.34 16 7 C -0.55 -14.26 9.28 -34.44 -0.32 -14.58 16 8 H 0.07 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.88 -24.67 13.29 55.43 0.74 -23.93 16 11 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 N -0.61 -11.58 10.48 -13.25 -0.14 -11.72 16 16 C 0.36 6.49 8.11 -156.17 -1.27 5.23 16 17 C -0.19 -3.35 7.04 -84.72 -0.60 -3.95 16 18 N -0.18 -2.91 12.40 32.19 0.40 -2.51 16 19 N -0.03 -0.51 13.72 60.35 0.83 0.32 16 20 N -0.40 -6.07 4.09 -67.22 -0.28 -6.35 16 21 C 0.11 1.09 11.54 59.84 0.69 1.78 16 22 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 25 H 0.41 7.99 8.43 -40.82 -0.34 7.65 16 26 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 281.76 15.07 4.25 4.25 Total: -1.00 -30.08 281.76 -7.46 -37.54 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.26 Total: 2.09 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -4.53 Total: 10.24 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: 1.09 Total: -69.32 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.08 -7.46 -37.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260267778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.416 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds