Wall clock time and date at job start Mon Mar 30 2020 21:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31962 * 120.62577 * 2 1 4 4 C 1.32839 * 121.33547 * 180.30259 * 3 2 1 5 5 N 1.38430 * 118.91596 * 179.74562 * 4 3 2 6 6 C 1.46499 * 119.99971 * 359.73428 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 N 1.32255 * 122.16721 * 359.46954 * 4 3 2 16 16 C 1.32747 * 120.40366 * 0.27664 * 15 4 3 17 17 C 1.40011 * 120.62753 * 179.81649 * 2 1 3 18 18 N 1.35133 * 134.16655 * 359.97438 * 17 2 1 19 19 N 1.28740 * 110.02211 * 179.97438 * 18 17 2 20 20 N 1.36756 * 134.77674 * 179.97438 * 16 15 4 21 21 C 1.46496 * 126.61555 * 0.02562 * 20 16 15 22 22 H 1.09001 * 109.47051 * 270.17951 * 1 2 3 23 23 H 1.08994 * 109.47118 * 30.18361 * 1 2 3 24 24 H 1.08997 * 109.46845 * 150.18313 * 1 2 3 25 25 H 0.97000 * 119.99609 * 179.72762 * 5 4 3 26 26 H 1.09002 * 109.47391 * 59.99776 * 6 5 4 27 27 H 1.09001 * 109.46813 * 299.99832 * 6 5 4 28 28 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47475 * 90.00144 * 21 20 16 30 30 H 1.09000 * 109.47246 * 210.00506 * 21 20 16 31 31 H 1.09001 * 109.47567 * 330.00194 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1793 1.1355 0.0000 4 6 3.5075 1.1520 -0.0060 5 7 4.1618 2.3719 -0.0111 6 6 3.3899 3.6171 -0.0157 7 6 4.3329 4.7926 -0.0200 8 1 5.4003 4.6286 -0.0199 9 6 3.8328 6.0775 -0.0253 10 7 2.5329 6.2772 -0.0260 11 14 5.0016 7.5346 -0.0315 12 1 6.4035 7.0447 -0.0302 13 1 4.7651 8.3537 -1.2474 14 1 4.7655 8.3637 1.1777 15 7 4.2255 0.0413 -0.0019 16 6 3.6287 -1.1444 0.0030 17 6 2.2203 -1.2048 0.0039 18 7 1.8659 -2.5088 0.0085 19 7 2.9175 -3.2514 0.0101 20 7 4.0627 -2.4413 0.0075 21 6 5.4551 -2.8966 0.0087 22 1 -0.3633 0.0032 1.0277 23 1 -0.3633 0.8883 -0.5167 24 1 -0.3633 -0.8916 -0.5110 25 1 5.1313 2.4022 -0.0115 26 1 2.7621 3.6587 0.8744 27 1 2.7614 3.6516 -0.9056 28 1 2.1811 7.1811 -0.0294 29 1 5.8009 -3.0059 1.0366 30 1 5.5237 -3.8573 -0.5018 31 1 6.0770 -2.1656 -0.5079 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260267778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:00 Heat of formation + Delta-G solvation = 120.640669 kcal Electronic energy + Delta-G solvation = -17230.106447 eV Core-core repulsion = 14355.265785 eV Total energy + Delta-G solvation = -2874.840662 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.45242 -40.74901 -37.13161 -36.20621 -34.78008 -34.25740 -31.95953 -29.81694 -28.85358 -28.41722 -25.18983 -24.81268 -23.60284 -22.04313 -19.79937 -19.49616 -18.78568 -17.65969 -17.53921 -16.72360 -16.48968 -15.90941 -15.22945 -14.76743 -14.48311 -14.12218 -14.08330 -14.05062 -13.82272 -13.58556 -13.30623 -13.02861 -12.80201 -12.78088 -12.23485 -12.20409 -11.96822 -11.44767 -11.20085 -10.63103 -10.44714 -10.29161 -9.01331 -8.28552 -6.43222 -0.74440 0.10198 0.75701 1.00570 1.44710 1.45259 1.57899 1.94906 2.40244 2.61196 2.85941 2.93072 3.07305 3.11293 3.40005 3.93253 4.16732 4.33764 4.59461 4.61491 4.72379 4.73303 4.77824 5.06694 5.22571 5.28635 5.30385 5.48892 5.78701 5.82015 6.02978 6.55162 6.65990 6.74491 7.20793 7.32543 8.82926 Molecular weight = 248.11amu Principal moments of inertia in cm(-1) A = 0.036504 B = 0.005043 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.864647 B = 5551.285083 C = 6292.399628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.324 3.676 3 N -0.579 5.579 4 C 0.601 3.399 5 N -0.659 5.659 6 C 0.284 3.716 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.015 3.985 10 N -0.921 5.921 11 Si 0.977 3.023 12 H -0.261 1.261 13 H -0.278 1.278 14 H -0.278 1.278 15 N -0.607 5.607 16 C 0.340 3.660 17 C -0.196 4.196 18 N -0.179 5.179 19 N -0.023 5.023 20 N -0.390 5.390 21 C 0.096 3.904 22 H 0.113 0.887 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.416 0.584 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -14.592 0.037 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 N -0.303 5.303 4 C 0.241 3.759 5 N -0.290 5.290 6 C 0.162 3.838 7 C -0.600 4.600 8 H 0.093 0.907 9 C -0.186 4.186 10 N -0.559 5.559 11 Si 0.801 3.199 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.203 1.203 15 N -0.344 5.344 16 C 0.086 3.914 17 C -0.329 4.329 18 N -0.060 5.060 19 N -0.005 5.005 20 N -0.188 5.188 21 C -0.043 4.043 22 H 0.131 0.869 23 H 0.112 0.888 24 H 0.126 0.874 25 H 0.254 0.746 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.877 -14.807 0.040 14.925 hybrid contribution 1.022 1.054 0.016 1.468 sum 2.899 -13.753 0.055 14.055 Atomic orbital electron populations 1.21032 0.83777 1.05634 1.05724 1.21810 0.98915 0.82936 0.80378 1.68094 1.07995 1.29477 1.24780 1.19379 0.84897 0.86089 0.85568 1.44972 1.09796 1.01390 1.72889 1.18731 0.91076 0.78322 0.95671 1.21590 0.93875 0.91111 1.53424 0.90678 1.25843 0.96964 1.01933 0.93841 1.70090 1.13326 1.22941 1.49542 0.85218 0.78863 0.78006 0.77791 1.18444 1.20348 1.20340 1.66752 1.39546 0.94857 1.33268 1.19274 0.90673 0.87539 0.93883 1.20992 0.94078 0.94195 1.23638 1.74497 1.20980 1.00574 1.09976 1.81619 0.85678 1.14361 1.18830 1.50087 1.09705 1.00335 1.58654 1.22366 0.72994 1.03432 1.05512 0.86918 0.88779 0.87438 0.74648 0.97598 0.97603 0.92111 0.88649 0.86017 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 10.23 71.24 0.73 -1.75 16 2 C 0.32 10.88 6.87 42.97 0.30 11.17 16 3 N -0.58 -23.47 9.47 -185.07 -1.75 -25.22 16 4 C 0.60 24.96 8.41 261.43 2.20 27.16 16 5 N -0.66 -28.61 5.70 -354.67 -2.02 -30.63 16 6 C 0.28 14.57 5.38 85.63 0.46 15.03 16 7 C -0.56 -29.64 9.28 25.60 0.24 -29.40 16 8 H 0.08 3.72 7.60 -2.91 -0.02 3.70 16 9 C 0.01 0.79 5.46 84.66 0.46 1.26 16 10 N -0.92 -52.43 13.29 21.45 0.28 -52.14 16 11 Si 0.98 41.32 29.54 68.60 2.03 43.35 16 12 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 13 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 14 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 15 N -0.61 -23.00 10.48 -195.84 -2.05 -25.05 16 16 C 0.34 11.80 8.11 134.16 1.09 12.89 16 17 C -0.20 -6.65 7.04 39.73 0.28 -6.37 16 18 N -0.18 -5.64 12.40 -52.07 -0.65 -6.29 16 19 N -0.02 -0.68 13.72 37.02 0.51 -0.17 16 20 N -0.39 -10.96 4.09 -366.57 -1.50 -12.46 16 21 C 0.10 1.64 11.54 127.77 1.47 3.12 16 22 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 25 H 0.42 16.51 8.43 -92.71 -0.78 15.72 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -64.90 281.76 2.47 -62.44 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.39 Total: 13.08 kcal Atomic # 6 Polarization: 25.87 SS G_CDS: 7.23 Total: 33.10 kcal Atomic # 7 Polarization: -144.78 SS G_CDS: -7.18 Total: -151.96 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -64.90 2.47 -62.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260267778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.080 kcal (2) G-P(sol) polarization free energy of solvation -64.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds