Wall clock time and date at job start Mon Mar 30 2020 21:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99775 * 2 1 4 4 H 1.48499 * 109.47348 * 239.99641 * 3 2 1 5 5 H 1.48504 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47080 * 120.00022 * 3 2 1 7 7 C 1.37871 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00642 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99999 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50231 * 300.08942 * 9 7 2 11 11 C 1.53093 * 109.54100 * 60.19432 * 9 7 2 12 12 O 1.43012 * 109.25881 * 176.80858 * 11 9 7 13 13 C 1.43018 * 113.73923 * 301.32965 * 12 11 9 14 14 C 1.53098 * 109.25547 * 58.66983 * 13 12 11 15 15 N 1.47009 * 109.25824 * 303.15164 * 14 13 12 16 16 C 1.46901 * 110.99939 * 182.39234 * 15 14 13 17 17 C 1.50695 * 109.47187 * 46.36716 * 16 15 14 18 18 C 1.38235 * 119.62125 * 94.99781 * 17 16 15 19 19 C 1.38620 * 119.16331 * 179.72806 * 18 17 16 20 20 C 1.38676 * 118.42038 * 359.97438 * 19 18 17 21 21 C 1.38174 * 119.16571 * 0.02562 * 20 19 18 22 22 N 1.31850 * 119.61978 * 274.72652 * 17 16 15 23 23 H 0.97003 * 120.00384 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.50831 * 296.74456 * 11 9 7 25 25 H 1.08996 * 109.50835 * 56.87188 * 11 9 7 26 26 H 1.08995 * 109.50588 * 178.60686 * 13 12 11 27 27 H 1.09001 * 109.50274 * 298.69281 * 13 12 11 28 28 H 1.08999 * 109.50566 * 183.21923 * 14 13 12 29 29 H 1.08998 * 109.50585 * 63.09016 * 14 13 12 30 30 H 1.08997 * 109.47439 * 286.36378 * 16 15 14 31 31 H 1.09007 * 109.47186 * 166.36372 * 16 15 14 32 32 H 1.07998 * 120.41461 * 359.74373 * 18 17 16 33 33 H 1.07997 * 120.79364 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.42041 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.62058 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6227 -2.5574 0.8870 11 6 0.3745 -2.5833 -1.2540 12 8 -0.2802 -3.8543 -1.2870 13 6 0.6199 -4.9657 -1.2889 14 6 1.4990 -4.9057 -0.0369 15 7 2.2058 -3.6171 -0.0021 16 6 3.1055 -3.5414 1.1567 17 6 3.8990 -4.8183 1.2608 18 6 5.1605 -4.8865 0.6996 19 6 5.8843 -6.0639 0.8060 20 6 5.3101 -7.1335 1.4763 21 6 4.0442 -6.9913 2.0117 22 7 3.3843 -5.8558 1.8908 23 1 -0.4851 0.8400 0.0004 24 1 -0.3723 -1.7897 -1.2295 25 1 0.9966 -2.4712 -2.1419 26 1 0.0505 -5.8952 -1.2897 27 1 1.2486 -4.9233 -2.1783 28 1 2.2249 -5.7184 -0.0626 29 1 0.8745 -5.0025 0.8512 30 1 2.5182 -3.4036 2.0644 31 1 3.7867 -2.6994 1.0333 32 1 5.5768 -4.0332 0.1850 33 1 6.8724 -6.1461 0.3777 34 1 5.8452 -8.0661 1.5779 35 1 3.5898 -7.8197 2.5349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260268468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:05 Heat of formation + Delta-G solvation = -17.047381 kcal Electronic energy + Delta-G solvation = -18342.261287 eV Core-core repulsion = 15532.697615 eV Total energy + Delta-G solvation = -2809.563671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34101 -40.07440 -36.79811 -35.12011 -33.31708 -32.59768 -31.68636 -29.03283 -27.31793 -25.55805 -24.45333 -23.96695 -22.55934 -21.02753 -18.68700 -17.66522 -17.46226 -17.17553 -16.85079 -16.43771 -16.18795 -15.62808 -15.46311 -15.29764 -15.02291 -14.28046 -14.06566 -13.82341 -13.66950 -13.08083 -12.82743 -12.73227 -12.60256 -12.43842 -12.15356 -12.07088 -11.58471 -11.09182 -10.74588 -10.71259 -10.39687 -10.20859 -9.91812 -9.12270 -8.18824 -6.31896 0.20668 0.43359 1.44042 1.45966 1.54030 2.39493 2.78493 3.04497 3.17511 3.31467 3.48172 3.83174 4.07616 4.14561 4.25643 4.29798 4.30945 4.38203 4.57012 4.58868 4.65187 4.76521 4.85359 4.90227 4.93031 4.97687 5.25114 5.30736 5.34390 5.46999 5.62931 5.85708 5.92075 6.18164 6.36023 6.56914 6.80625 7.12799 7.37871 8.89105 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.007255 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.493954 B = 3858.698343 C = 4721.577305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.525 4.525 8 H 0.069 0.931 9 C 0.196 3.804 10 H -0.038 1.038 11 C 0.083 3.917 12 O -0.418 6.418 13 C 0.062 3.938 14 C 0.034 3.966 15 N -0.526 5.526 16 C 0.120 3.880 17 C 0.114 3.886 18 C -0.162 4.162 19 C -0.073 4.073 20 C -0.167 4.167 21 C 0.083 3.917 22 N -0.515 5.515 23 H 0.266 0.734 24 H 0.097 0.903 25 H 0.033 0.967 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 -12.749 0.573 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.087 0.913 9 C 0.089 3.911 10 H -0.020 1.020 11 C 0.006 3.994 12 O -0.338 6.338 13 C -0.015 4.015 14 C -0.094 4.094 15 N -0.251 5.251 16 C -0.008 4.008 17 C -0.022 4.022 18 C -0.183 4.183 19 C -0.098 4.098 20 C -0.187 4.187 21 C -0.074 4.074 22 N -0.226 5.226 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 10.453 -12.514 0.502 16.313 hybrid contribution 0.449 1.039 0.614 1.288 sum 10.902 -11.475 1.116 15.868 Atomic orbital electron populations 1.69981 1.07467 1.28004 1.50684 1.25829 0.95728 1.02877 0.94166 0.85441 0.78181 0.77981 0.79052 1.19084 1.20958 1.19561 1.21264 0.93602 0.89990 1.51483 0.91260 1.19662 0.89475 0.89328 0.92646 1.02016 1.22759 0.96480 0.83335 0.96797 1.87863 1.35073 1.15781 1.95076 1.22779 0.92212 0.90028 0.96487 1.22645 0.96628 0.92922 0.97233 1.62464 1.20355 1.02353 1.39948 1.20777 0.94888 0.93662 0.91480 1.21074 0.93134 0.93713 0.94265 1.22116 0.94885 1.00724 1.00546 1.21988 1.00737 0.91574 0.95545 1.22509 0.96499 1.01099 0.98590 1.23261 0.92784 0.94577 0.96790 1.67514 1.37963 1.00953 1.16163 0.92440 0.88510 0.94888 0.86851 0.92601 0.89747 0.96811 0.96640 0.89264 0.84193 0.81498 0.81155 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 11.37 21.44 0.24 -53.21 16 2 C 0.01 0.73 5.30 84.65 0.45 1.18 16 3 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.53 -28.89 8.03 25.60 0.21 -28.68 16 8 H 0.07 3.68 6.56 -2.91 -0.02 3.66 16 9 C 0.20 10.56 1.93 44.18 0.09 10.65 16 10 H -0.04 -2.34 8.14 -2.39 -0.02 -2.36 16 11 C 0.08 4.36 6.02 72.01 0.43 4.80 16 12 O -0.42 -20.18 10.83 -148.98 -1.61 -21.79 16 13 C 0.06 2.40 7.01 72.01 0.50 2.90 16 14 C 0.03 1.41 4.80 86.32 0.41 1.83 16 15 N -0.53 -24.04 4.67 -878.96 -4.11 -28.14 16 16 C 0.12 5.05 5.04 85.56 0.43 5.48 16 17 C 0.11 3.92 4.92 42.55 0.21 4.13 16 18 C -0.16 -4.42 9.72 22.36 0.22 -4.20 16 19 C -0.07 -1.41 10.18 22.47 0.23 -1.18 16 20 C -0.17 -2.97 10.11 22.36 0.23 -2.74 16 21 C 0.08 1.94 11.18 84.67 0.95 2.89 16 22 N -0.52 -16.90 8.75 -183.89 -1.61 -18.51 16 23 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.10 5.58 6.19 -2.38 -0.01 5.57 16 25 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 27 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.08 3.16 6.03 -2.39 -0.01 3.14 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.02 0.72 8.08 -2.39 -0.02 0.71 16 31 H 0.09 3.74 6.62 -2.38 -0.02 3.72 16 32 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 33 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 35 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -66.96 285.46 0.37 -66.59 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.08 Total: 13.04 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 4.35 Total: -2.94 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -5.47 Total: -99.86 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.61 Total: -21.79 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -66.96 0.37 -66.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260268468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.548 kcal (2) G-P(sol) polarization free energy of solvation -66.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds