Wall clock time and date at job start Mon Mar 30 2020 21:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47428 * 2 1 4 4 C 1.50707 * 109.46764 * 240.00074 * 2 1 3 5 5 H 1.07994 * 120.00155 * 245.45681 * 4 2 1 6 6 C 1.37877 * 119.99871 * 65.46477 * 4 2 1 7 7 N 1.31516 * 119.99835 * 9.55159 * 6 4 2 8 8 Si 1.86797 * 120.00063 * 189.55900 * 6 4 2 9 9 H 1.48498 * 109.47131 * 84.99351 * 8 6 4 10 10 H 1.48499 * 109.47201 * 204.99548 * 8 6 4 11 11 H 1.48501 * 109.46651 * 324.98922 * 8 6 4 12 12 N 1.46498 * 109.47169 * 120.00763 * 2 1 3 13 13 C 1.39678 * 119.99753 * 274.99348 * 12 2 1 14 14 C 1.38908 * 120.07539 * 180.02562 * 13 12 2 15 15 C 1.38112 * 119.92580 * 179.72633 * 14 13 12 16 16 C 1.38288 * 120.07016 * 0.28069 * 15 14 13 17 17 C 1.50701 * 119.91834 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46883 * 90.00106 * 17 16 15 19 19 N 1.34776 * 120.00007 * 179.97438 * 18 17 16 20 20 O 1.21277 * 120.00171 * 359.97438 * 18 17 16 21 21 C 1.38283 * 120.15316 * 0.02562 * 16 15 14 22 22 C 1.38105 * 120.07381 * 0.02562 * 21 16 15 23 23 H 1.08997 * 109.47174 * 183.65995 * 1 2 3 24 24 H 1.09003 * 109.47059 * 303.65524 * 1 2 3 25 25 H 1.08994 * 109.47199 * 63.65354 * 1 2 3 26 26 H 0.97003 * 120.00150 * 179.97438 * 7 6 4 27 27 H 0.97000 * 120.00499 * 94.99442 * 12 2 1 28 28 H 1.07999 * 120.03875 * 0.02562 * 14 13 12 29 29 H 1.07994 * 119.96225 * 180.29695 * 15 14 13 30 30 H 1.08997 * 109.46557 * 209.99463 * 17 16 15 31 31 H 1.08993 * 109.47423 * 330.00145 * 17 16 15 32 32 H 0.97004 * 119.99746 * 359.97438 * 19 18 17 33 33 H 0.96993 * 120.00410 * 180.02562 * 19 18 17 34 34 H 1.07991 * 119.95991 * 179.97438 * 21 16 15 35 35 H 1.07999 * 120.03753 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5785 -1.6370 -1.1340 6 6 1.7945 -0.1773 -2.4797 7 7 1.2992 1.0357 -2.5935 8 14 2.1757 -1.1779 -4.0103 9 1 1.0237 -2.0607 -4.3242 10 1 2.4225 -0.2612 -5.1522 11 1 3.3842 -2.0071 -3.7711 12 7 2.0183 -0.6908 1.1961 13 6 2.1518 0.0060 2.3993 14 6 2.6152 -0.6473 3.5342 15 6 2.7514 0.0460 4.7209 16 6 2.4215 1.3876 4.7814 17 6 2.5709 2.1406 6.0783 18 6 3.9534 2.7353 6.1574 19 7 4.3157 3.4574 7.2362 20 8 4.7401 2.5640 5.2504 21 6 1.9539 2.0394 3.6551 22 6 1.8143 1.3519 2.4655 23 1 -0.3633 -1.0255 0.0656 24 1 -0.3633 0.5695 0.8554 25 1 -0.3633 0.4560 -0.9209 26 1 1.1322 1.4110 -3.4722 27 1 2.2490 -1.6319 1.1525 28 1 2.8733 -1.6949 3.4875 29 1 3.1162 -0.4601 5.6025 30 1 1.8293 2.9382 6.1227 31 1 2.4207 1.4577 6.9144 32 1 3.6863 3.5947 7.9615 33 1 5.2053 3.8404 7.2871 34 1 1.6968 3.0871 3.7060 35 1 1.4495 1.8616 1.5861 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381761855.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:06 Heat of formation + Delta-G solvation = -25.021358 kcal Electronic energy + Delta-G solvation = -17314.260218 eV Core-core repulsion = 14504.350769 eV Total energy + Delta-G solvation = -2809.909449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65109 -38.45916 -35.64681 -33.65218 -32.97606 -31.12356 -30.27020 -28.74206 -25.88036 -25.05825 -22.40083 -21.58599 -20.39810 -19.63370 -17.46042 -17.13927 -16.63975 -15.89173 -15.38587 -14.83886 -14.69816 -14.07761 -13.75373 -13.34254 -13.22552 -12.81492 -12.60809 -12.21277 -11.85588 -11.70155 -11.17343 -11.10203 -10.94895 -10.66927 -10.50247 -10.28717 -9.97041 -9.90903 -9.71304 -9.22043 -8.98287 -8.44892 -8.27316 -6.43484 -6.15100 -4.19537 2.10782 2.21702 2.73804 3.25796 3.32311 3.34681 3.60843 4.29871 4.53901 4.64386 4.97083 5.18162 5.19512 5.28952 5.56572 5.60869 5.63684 6.03352 6.30628 6.46067 6.60675 6.69927 6.72902 6.88594 6.98503 7.03851 7.11297 7.22507 7.30399 7.35878 7.60694 7.68741 7.79170 8.07849 8.32773 8.41397 8.77213 8.95996 9.46000 10.92861 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.042464 B = 0.004301 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.218305 B = 6509.053098 C = 6595.777304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.725 5.725 13 C 0.241 3.759 14 C -0.218 4.218 15 C -0.055 4.055 16 C -0.163 4.163 17 C -0.084 4.084 18 C 0.510 3.490 19 N -0.866 5.866 20 O -0.526 6.526 21 C -0.054 4.054 22 C -0.201 4.201 23 H 0.030 0.970 24 H 0.018 0.982 25 H 0.071 0.929 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.397 0.603 34 H 0.109 0.891 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 2.753 17.989 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.346 5.346 13 C 0.132 3.868 14 C -0.242 4.242 15 C -0.074 4.074 16 C -0.166 4.166 17 C -0.124 4.124 18 C 0.295 3.705 19 N -0.431 5.431 20 O -0.400 6.400 21 C -0.073 4.073 22 C -0.224 4.224 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.127 0.873 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.542 2.767 16.901 17.135 hybrid contribution 0.353 -0.563 -0.506 0.835 sum 0.895 2.204 16.395 16.566 Atomic orbital electron populations 1.22112 0.99256 0.98941 1.00163 1.18728 0.90179 0.94086 0.80862 0.93478 1.21173 1.36754 1.08698 0.90454 0.92165 1.24871 0.94957 0.94665 0.99024 1.69956 1.44227 1.13765 1.24236 0.86519 0.78755 0.79983 0.82227 1.20442 1.21139 1.19902 1.45567 1.69410 1.12007 1.07662 1.18058 0.90651 0.91596 0.86538 1.20437 1.11216 0.99771 0.92763 1.20445 0.96962 0.93414 0.96611 1.18690 1.09606 0.94228 0.94075 1.20435 0.93650 1.00234 0.98097 1.20998 0.90360 0.77729 0.81416 1.43982 1.19128 1.57391 1.22561 1.90792 1.53512 1.58257 1.37482 1.20571 0.96668 0.98121 0.91967 1.20742 1.09343 0.93620 0.98680 0.95084 0.96291 0.91003 0.92585 0.77845 0.87070 0.87528 0.88787 0.88886 0.77434 0.77335 0.87336 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.30 37.16 0.35 -3.11 16 2 C 0.26 6.60 2.11 -69.08 -0.15 6.46 16 3 H 0.05 1.31 6.44 -51.93 -0.33 0.97 16 4 C -0.53 -14.39 8.66 -34.44 -0.30 -14.69 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.85 5.17 -17.82 -0.09 1.76 16 7 N -0.88 -24.93 12.16 55.43 0.67 -24.25 16 8 Si 0.90 20.99 29.55 -169.99 -5.02 15.97 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.72 -15.80 5.24 -53.29 -0.28 -16.08 16 13 C 0.24 4.92 6.64 -83.78 -0.56 4.37 16 14 C -0.22 -3.91 9.90 -39.38 -0.39 -4.30 16 15 C -0.06 -0.89 9.69 -39.61 -0.38 -1.28 16 16 C -0.16 -2.54 4.38 -104.59 -0.46 -3.00 16 17 C -0.08 -0.92 5.83 -29.03 -0.17 -1.09 16 18 C 0.51 6.40 8.09 -10.98 -0.09 6.31 16 19 N -0.87 -6.60 8.87 31.22 0.28 -6.32 16 20 O -0.53 -9.62 16.87 5.56 0.09 -9.52 16 21 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 22 C -0.20 -4.05 8.85 -39.38 -0.35 -4.40 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.02 0.40 7.63 -51.93 -0.40 0.01 16 25 H 0.07 1.84 6.83 -51.93 -0.35 1.48 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 27 H 0.39 7.90 8.54 -40.82 -0.35 7.55 16 28 H 0.11 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.40 1.60 8.83 -40.82 -0.36 1.24 16 33 H 0.40 2.77 8.93 -40.82 -0.36 2.41 16 34 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.13 2.69 6.04 -52.49 -0.32 2.37 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -32.39 300.08 -7.25 -39.64 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -4.55 Total: 10.34 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.97 Total: -14.29 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.67 Total: -46.66 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.39 -7.25 -39.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381761855.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.616 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds