Wall clock time and date at job start Mon Mar 30 2020 21:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46327 * 2 1 4 4 C 1.50693 * 109.47016 * 119.99681 * 2 1 3 5 5 H 1.08006 * 119.99755 * 120.00665 * 4 2 1 6 6 C 1.37878 * 120.00454 * 300.00201 * 4 2 1 7 7 N 1.31513 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00039 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47183 * 90.00434 * 8 6 4 10 10 H 1.48502 * 109.47313 * 210.00256 * 8 6 4 11 11 H 1.48499 * 109.47522 * 330.00142 * 8 6 4 12 12 N 1.46500 * 109.47336 * 240.00283 * 2 1 3 13 13 C 1.39676 * 120.00062 * 84.99377 * 12 2 1 14 14 C 1.38906 * 120.07171 * 179.97438 * 13 12 2 15 15 C 1.38111 * 119.92343 * 179.97438 * 14 13 12 16 16 C 1.38288 * 120.07382 * 0.28047 * 15 14 13 17 17 C 1.50698 * 119.92407 * 179.69843 * 16 15 14 18 18 C 1.50695 * 109.47077 * 90.00107 * 17 16 15 19 19 N 1.34778 * 120.00370 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00139 * 359.97438 * 18 17 16 21 21 C 1.38286 * 120.14755 * 359.44532 * 16 15 14 22 22 C 1.38112 * 120.07587 * 0.55318 * 21 16 15 23 23 H 1.08995 * 109.47203 * 299.99792 * 1 2 3 24 24 H 1.08997 * 109.47101 * 59.99888 * 1 2 3 25 25 H 1.09003 * 109.46942 * 179.97438 * 1 2 3 26 26 H 0.97005 * 120.00083 * 179.97438 * 7 6 4 27 27 H 0.96994 * 119.99675 * 264.99805 * 12 2 1 28 28 H 1.07999 * 120.03932 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.96028 * 179.97438 * 15 14 13 30 30 H 1.09001 * 109.46776 * 210.00059 * 17 16 15 31 31 H 1.09003 * 109.47041 * 330.00009 * 17 16 15 32 32 H 0.97006 * 119.99705 * 0.02562 * 19 18 17 33 33 H 0.97000 * 120.00383 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.96005 * 180.25011 * 21 16 15 35 35 H 1.07998 * 120.03717 * 179.70130 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3431 -0.9493 5.1120 11 1 2.4859 -2.5661 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 2.1517 0.0063 -2.3994 14 6 2.6152 -0.6469 -3.5343 15 6 2.7453 0.0450 -4.7225 16 6 2.4203 1.3878 -4.7817 17 6 2.5700 2.1411 -6.0783 18 6 1.2854 2.0537 -6.8612 19 7 1.1854 2.6578 -8.0619 20 8 0.3413 1.4398 -6.4109 21 6 1.9533 2.0397 -3.6551 22 6 1.8208 1.3538 -2.4636 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7080 1.1609 3.4844 27 1 2.2491 -1.6316 -1.1526 28 1 2.8726 -1.6947 -3.4878 29 1 3.1059 -0.4622 -5.6052 30 1 2.7966 3.1862 -5.8672 31 1 3.3810 1.7039 -6.6609 32 1 1.9406 3.1485 -8.4223 33 1 0.3587 2.6013 -8.5660 34 1 1.6966 3.0875 -3.7058 35 1 1.4606 1.8647 -1.5830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381761856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:08 Heat of formation + Delta-G solvation = -23.864532 kcal Electronic energy + Delta-G solvation = -17320.725479 eV Core-core repulsion = 14510.866194 eV Total energy + Delta-G solvation = -2809.859285 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.65976 -38.46346 -35.65138 -33.66320 -33.01405 -31.09978 -30.27249 -28.65463 -25.86132 -25.08929 -22.38853 -21.58179 -20.39020 -19.62261 -17.46756 -17.13656 -16.65026 -15.91166 -15.38687 -14.85501 -14.70674 -14.08331 -13.74196 -13.39874 -13.22098 -12.81369 -12.55359 -12.23658 -11.85652 -11.59834 -11.18831 -11.02079 -10.99327 -10.65510 -10.44265 -10.21549 -10.01990 -9.91088 -9.72565 -9.18757 -8.96146 -8.46859 -8.27743 -6.42804 -6.13435 -4.21665 2.10568 2.21522 2.72470 3.24391 3.31059 3.33810 3.59855 4.28251 4.53438 4.64959 4.96699 5.18118 5.19547 5.28287 5.56509 5.60578 5.63304 6.03091 6.30303 6.46172 6.61613 6.71467 6.76746 6.96842 7.01049 7.11150 7.12298 7.22704 7.29376 7.41485 7.60797 7.72280 7.90117 8.11058 8.31376 8.42188 8.75643 8.95957 9.45394 10.92203 Molecular weight = 248.13amu Principal moments of inertia in cm(-1) A = 0.053019 B = 0.004216 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.981474 B = 6639.624336 C = 6822.945534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.267 3.733 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.725 5.725 13 C 0.241 3.759 14 C -0.219 4.219 15 C -0.055 4.055 16 C -0.163 4.163 17 C -0.084 4.084 18 C 0.510 3.490 19 N -0.866 5.866 20 O -0.527 6.527 21 C -0.054 4.054 22 C -0.201 4.201 23 H 0.089 0.911 24 H 0.014 0.986 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.398 0.602 33 H 0.396 0.604 34 H 0.108 0.892 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 3.911 -17.108 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.347 5.347 13 C 0.132 3.868 14 C -0.242 4.242 15 C -0.074 4.074 16 C -0.166 4.166 17 C -0.124 4.124 18 C 0.295 3.705 19 N -0.430 5.430 20 O -0.402 6.402 21 C -0.073 4.073 22 C -0.224 4.224 23 H 0.107 0.893 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.222 0.778 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.226 0.774 33 H 0.227 0.773 34 H 0.127 0.873 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.298 3.676 -16.246 16.980 hybrid contribution 0.344 -0.549 0.434 0.780 sum 3.642 3.127 -15.812 16.525 Atomic orbital electron populations 1.22180 0.98843 0.99525 1.00602 1.18715 0.90683 0.93441 0.80757 0.94214 1.21224 1.32061 1.13199 0.90338 0.92170 1.24877 0.94795 0.95012 0.99045 1.69883 1.36021 1.22657 1.23869 0.86445 0.78575 0.79920 0.82160 1.20552 1.21068 1.19879 1.45590 1.69375 1.12016 1.07690 1.18055 0.90620 0.91573 0.86598 1.20437 1.11271 0.99698 0.92805 1.20446 0.97546 0.93116 0.96296 1.18690 1.09896 0.94524 0.93517 1.20437 0.94931 1.02124 0.94938 1.21002 0.90572 0.77861 0.81019 1.43985 1.19283 1.57915 1.21864 1.90786 1.39939 1.40814 1.68615 1.20572 0.96158 0.98538 0.92031 1.20731 1.09337 0.93593 0.98761 0.89269 0.96675 0.95316 0.92611 0.77825 0.87067 0.87529 0.88769 0.88865 0.77413 0.77343 0.87345 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.20 37.16 0.34 -3.45 16 2 C 0.27 6.69 2.25 -69.08 -0.16 6.54 16 3 H 0.04 1.08 6.49 -51.93 -0.34 0.75 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.73 -15.86 5.24 -53.29 -0.28 -16.14 16 13 C 0.24 4.93 6.64 -83.79 -0.56 4.37 16 14 C -0.22 -3.92 9.90 -39.38 -0.39 -4.31 16 15 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 16 C -0.16 -2.55 4.38 -104.59 -0.46 -3.00 16 17 C -0.08 -0.92 5.83 -29.04 -0.17 -1.09 16 18 C 0.51 6.33 8.09 -10.99 -0.09 6.24 16 19 N -0.87 -6.49 8.87 31.22 0.28 -6.21 16 20 O -0.53 -9.49 16.87 5.56 0.09 -9.40 16 21 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 22 C -0.20 -4.06 8.85 -39.38 -0.35 -4.41 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 24 H 0.01 0.34 7.70 -51.93 -0.40 -0.06 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.39 7.95 8.55 -40.82 -0.35 7.60 16 28 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.40 1.57 8.83 -40.82 -0.36 1.21 16 33 H 0.40 2.71 8.93 -40.82 -0.36 2.34 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 2.68 6.12 -52.49 -0.32 2.35 16 LS Contribution 298.92 15.07 4.50 4.50 Total: -1.00 -32.09 298.92 -7.30 -39.39 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -4.52 Total: 10.64 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.99 Total: -14.56 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.63 Total: -46.44 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.09 -7.30 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381761856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.530 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds