Wall clock time and date at job start Mon Mar 30 2020 21:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 N 1.46495 * 109.47076 * 120.00206 * 2 1 3 5 5 S 1.65598 * 120.00110 * 264.99922 * 4 2 1 6 6 O 1.42096 * 106.40550 * 178.53858 * 5 4 2 7 7 O 1.42098 * 106.40441 * 311.46312 * 5 4 2 8 8 C 1.76208 * 107.21645 * 64.99997 * 5 4 2 9 9 H 1.08000 * 119.99673 * 0.02562 * 8 5 4 10 10 C 1.37875 * 119.99834 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99700 * 179.97438 * 10 8 5 12 12 Si 1.86798 * 120.00324 * 0.02562 * 10 8 5 13 13 H 1.48501 * 109.47295 * 89.99560 * 12 10 8 14 14 H 1.48504 * 109.46962 * 209.99902 * 12 10 8 15 15 H 1.48502 * 109.46783 * 329.99502 * 12 10 8 16 16 C 1.53002 * 109.47327 * 240.00194 * 2 1 3 17 17 H 1.09002 * 109.82434 * 185.70112 * 16 2 1 18 18 C 1.54386 * 109.90472 * 64.76508 * 16 2 1 19 19 C 1.55306 * 102.25271 * 219.08621 * 18 16 2 20 20 C 1.54950 * 100.94218 * 34.13402 * 19 18 16 21 21 O 1.43241 * 109.83035 * 306.58584 * 16 2 1 22 22 H 1.08995 * 109.47001 * 299.99720 * 1 2 3 23 23 H 1.09001 * 109.46835 * 59.99947 * 1 2 3 24 24 H 1.08999 * 109.46669 * 179.97438 * 1 2 3 25 25 H 0.97005 * 120.00518 * 85.00456 * 4 2 1 26 26 H 0.97000 * 120.00179 * 179.97438 * 11 10 8 27 27 H 1.09000 * 110.84933 * 337.27932 * 18 16 2 28 28 H 1.09001 * 110.84623 * 100.89979 * 18 16 2 29 29 H 1.09002 * 111.12884 * 276.21730 * 19 18 16 30 30 H 1.08997 * 111.16217 * 152.06820 * 19 18 16 31 31 H 1.08992 * 110.31012 * 204.63970 * 20 19 18 32 32 H 1.09000 * 110.39363 * 82.50862 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 0.1771 2.5504 6 8 2.8123 -0.7698 3.5315 7 8 3.2436 1.2442 2.1156 8 6 0.9274 0.9146 3.1474 9 1 -0.0048 0.7485 2.6279 10 6 0.9555 1.7029 4.2782 11 7 -0.1526 2.2538 4.7235 12 14 2.5677 1.9896 5.1772 13 1 3.2363 3.1940 4.6227 14 1 2.2986 2.1943 6.6232 15 1 3.4499 0.8081 5.0003 16 6 2.0401 -0.7212 -1.2493 17 1 3.1253 -0.8136 -1.2056 18 6 1.6318 0.0651 -2.5136 19 6 1.2591 -1.0724 -3.5031 20 6 0.6561 -2.1199 -2.5335 21 8 1.4449 -2.0211 -1.3369 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 2.1111 -1.6562 1.1948 26 1 -0.1329 2.8081 5.5193 27 1 0.7706 0.7024 -2.3129 28 1 2.4690 0.6507 -2.8934 29 1 2.1449 -1.4642 -4.0032 30 1 0.5181 -0.7361 -4.2283 31 1 0.7376 -3.1201 -2.9588 32 1 -0.3864 -1.8840 -2.3199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:49 Heat of formation + Delta-G solvation = -159.868715 kcal Electronic energy + Delta-G solvation = -17304.628235 eV Core-core repulsion = 14390.763560 eV Total energy + Delta-G solvation = -2913.864675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 249.087 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.69228 -37.69752 -36.55440 -36.47800 -35.17544 -33.04808 -31.10134 -29.19171 -28.36670 -24.59944 -22.59004 -21.43711 -21.01367 -19.45112 -18.70638 -17.73262 -17.38629 -16.88676 -16.67937 -15.93156 -15.45634 -15.21099 -14.98589 -14.77143 -14.15453 -13.84708 -13.42638 -13.37812 -13.18003 -12.76411 -12.67835 -12.61517 -12.53199 -12.38361 -12.12355 -11.93280 -11.59511 -11.55406 -11.31703 -11.14235 -10.51482 -10.12541 -8.93971 -7.48814 0.18287 1.05324 1.14438 1.22473 1.90245 2.43628 2.54573 3.01367 3.34578 3.60852 3.77431 4.04228 4.07217 4.24677 4.26646 4.42258 4.46860 4.52262 4.76681 4.90447 4.92616 5.00643 5.02048 5.12216 5.27320 5.31343 5.41092 5.49916 6.11515 6.16662 6.34886 6.57281 8.22881 Molecular weight = 249.09amu Principal moments of inertia in cm(-1) A = 0.044038 B = 0.007083 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.664917 B = 3952.393415 C = 4144.421179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 H 0.090 0.910 4 N -1.103 6.103 5 S 2.694 3.306 6 O -1.034 7.034 7 O -1.030 7.030 8 C -1.035 5.035 9 H 0.117 0.883 10 C 0.110 3.890 11 N -0.853 5.853 12 Si 0.822 3.178 13 H -0.238 1.238 14 H -0.221 1.221 15 H -0.233 1.233 16 C 0.078 3.922 17 H 0.084 0.916 18 C -0.153 4.153 19 C -0.144 4.144 20 C 0.038 3.962 21 O -0.394 6.394 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.418 0.582 26 H 0.290 0.710 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -4.746 -16.054 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 H 0.108 0.892 4 N -0.862 5.862 5 S 2.794 3.206 6 O -1.025 7.025 7 O -1.020 7.020 8 C -1.167 5.167 9 H 0.135 0.865 10 C -0.106 4.106 11 N -0.483 5.483 12 Si 0.640 3.360 13 H -0.162 1.162 14 H -0.144 1.144 15 H -0.155 1.155 16 C 0.019 3.981 17 H 0.102 0.898 18 C -0.191 4.191 19 C -0.181 4.181 20 C -0.038 4.038 21 O -0.313 6.313 22 H 0.066 0.934 23 H 0.107 0.893 24 H 0.085 0.915 25 H 0.252 0.748 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.794 -4.526 -15.406 16.157 hybrid contribution -0.407 0.154 0.741 0.859 sum 1.387 -4.373 -14.665 15.365 Atomic orbital electron populations 1.22365 0.94872 1.02984 1.02806 1.21326 0.95225 0.96210 0.84611 0.89228 1.55039 1.84350 1.19308 1.27551 1.00583 0.75167 0.72938 0.71913 1.93427 1.84733 1.64281 1.60014 1.93367 1.69471 1.56941 1.82191 1.31080 1.17446 1.45264 1.22952 0.86488 1.25118 0.99057 0.91185 0.95251 1.70009 1.28418 1.27181 1.22698 0.87533 0.81649 0.83372 0.83483 1.16156 1.14362 1.15543 1.23030 0.97619 0.83543 0.93920 0.89828 1.23298 1.03781 0.98880 0.93147 1.23234 1.02437 0.94616 0.97844 1.23631 0.95093 1.00854 0.84249 1.88413 1.66649 1.31924 1.44350 0.93431 0.89316 0.91542 0.74753 0.89927 0.89176 0.88330 0.89665 0.87795 0.88678 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.43 9.06 71.98 0.65 -4.78 16 2 C 0.13 4.47 2.78 44.99 0.12 4.60 16 3 H 0.09 3.14 7.50 -2.39 -0.02 3.13 16 4 N -1.10 -43.68 5.47 -169.39 -0.93 -44.61 16 5 S 2.69 136.69 4.22 -56.49 -0.24 136.45 16 6 O -1.03 -57.01 16.02 -128.00 -2.05 -59.06 16 7 O -1.03 -54.94 16.17 -128.00 -2.07 -57.01 16 8 C -1.03 -58.39 10.11 67.73 0.68 -57.71 16 9 H 0.12 6.65 5.86 -2.91 -0.02 6.63 16 10 C 0.11 6.39 5.47 84.65 0.46 6.86 16 11 N -0.85 -49.49 13.96 21.45 0.30 -49.19 16 12 Si 0.82 41.67 26.54 68.60 1.82 43.49 16 13 H -0.24 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.22 -9.92 7.11 99.48 0.71 -9.21 16 15 H -0.23 -12.25 5.61 99.48 0.56 -11.69 16 16 C 0.08 2.04 3.40 31.07 0.11 2.15 16 17 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 18 C -0.15 -2.79 6.36 31.86 0.20 -2.58 16 19 C -0.14 -2.01 7.16 32.05 0.23 -1.78 16 20 C 0.04 0.69 7.72 72.65 0.56 1.25 16 21 O -0.39 -10.38 9.90 -148.98 -1.48 -11.86 16 22 H 0.05 1.81 5.74 -2.39 -0.01 1.80 16 23 H 0.09 2.18 6.36 -2.39 -0.02 2.16 16 24 H 0.07 2.03 7.54 -2.39 -0.02 2.01 16 25 H 0.42 15.05 8.66 -96.74 -0.84 14.22 16 26 H 0.29 15.21 8.31 -92.71 -0.77 14.43 16 27 H 0.09 1.58 6.09 -2.39 -0.01 1.56 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -70.00 269.05 -1.47 -71.47 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.15 Total: 22.31 kcal Atomic # 6 Polarization: -55.03 SS G_CDS: 3.02 Total: -52.00 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -0.63 Total: -93.80 kcal Atomic # 8 Polarization: -122.32 SS G_CDS: -5.60 Total: -127.92 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.82 Total: 43.49 kcal Atomic # 16 Polarization: 136.69 SS G_CDS: -0.24 Total: 136.45 kcal Total: -70.00 -1.47 -71.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.399 kcal (2) G-P(sol) polarization free energy of solvation -70.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds