Wall clock time and date at job start Mon Mar 30 2020 21:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38243 * 119.96913 * 2 1 4 4 C 1.50703 * 119.93947 * 0.02562 * 3 2 1 5 5 H 1.08994 * 109.47275 * 324.72366 * 4 3 2 6 6 N 1.46898 * 109.46797 * 204.71882 * 4 3 2 7 7 C 1.50700 * 109.47148 * 84.72143 * 4 3 2 8 8 H 1.08002 * 119.99770 * 0.02562 * 7 4 3 9 9 C 1.37871 * 120.00083 * 179.97438 * 7 4 3 10 10 N 1.31514 * 120.00147 * 0.02562 * 9 7 4 11 11 Si 1.86803 * 120.00278 * 180.02562 * 9 7 4 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 300.00001 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00094 * 11 9 7 15 15 C 1.38207 * 120.11311 * 179.73547 * 3 2 1 16 16 C 1.38236 * 120.11561 * 0.33183 * 15 3 2 17 17 C 1.38665 * 120.06576 * 359.94950 * 16 15 3 18 18 C 1.38668 * 119.96831 * 180.23563 * 2 1 3 19 19 O 1.36107 * 119.39719 * 359.83000 * 18 2 1 20 20 C 1.43176 * 116.68976 * 163.02614 * 19 18 2 21 21 C 1.53463 * 108.24101 * 46.26635 * 20 19 18 22 22 O 1.36107 * 119.39693 * 179.79050 * 17 16 15 23 23 H 1.08999 * 109.47582 * 90.00105 * 1 2 3 24 24 H 1.09000 * 109.47135 * 209.99757 * 1 2 3 25 25 H 1.09005 * 109.47567 * 329.99512 * 1 2 3 26 26 H 1.00892 * 111.00332 * 300.00256 * 6 4 3 27 27 H 1.00905 * 110.99665 * 63.96030 * 6 4 3 28 28 H 0.97005 * 119.99661 * 359.97438 * 10 9 7 29 29 H 1.07995 * 119.94002 * 180.31537 * 15 3 2 30 30 H 1.07999 * 119.96998 * 179.91892 * 16 15 3 31 31 H 1.08998 * 109.71295 * 286.57765 * 20 19 18 32 32 H 1.09006 * 109.71281 * 165.95185 * 20 19 18 33 33 H 1.08996 * 109.70992 * 180.55634 * 21 20 19 34 34 H 1.09003 * 109.70440 * 59.93620 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.1976 0.0000 4 6 1.4419 2.5015 0.0006 5 1 0.5337 2.3954 -0.5925 6 7 2.2847 3.5560 -0.5787 7 6 1.0775 2.8703 1.4156 8 1 1.3647 2.2252 2.2328 9 6 0.3784 4.0317 1.6671 10 7 0.0290 4.8175 0.6720 11 14 -0.0727 4.4893 3.4211 12 1 -0.8163 5.7746 3.4218 13 1 -0.9249 3.4235 4.0070 14 1 1.1649 4.6336 4.2289 15 6 3.5796 1.2011 0.0055 16 6 4.2762 0.0071 0.0041 17 6 3.5897 -1.1977 -0.0017 18 6 2.1996 -1.2013 -0.0049 19 8 1.5061 -2.3724 -0.0062 20 6 2.2301 -3.5482 -0.3846 21 6 3.5710 -3.5476 0.3618 22 8 4.2893 -2.3652 -0.0074 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 3.1336 3.6738 -0.0462 27 1 2.4894 3.3637 -1.5478 28 1 0.2636 4.5801 -0.2388 29 1 4.1162 2.1383 0.0107 30 1 5.3561 0.0125 0.0071 31 1 2.4080 -3.5402 -1.4600 32 1 1.6584 -4.4355 -0.1126 33 1 4.1473 -4.4298 0.0830 34 1 3.3930 -3.5488 1.4372 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260406708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:40 Heat of formation + Delta-G solvation = -51.991287 kcal Electronic energy + Delta-G solvation = -18473.545691 eV Core-core repulsion = 15564.748076 eV Total energy + Delta-G solvation = -2908.797615 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.98653 -38.12363 -37.02911 -34.52282 -31.96746 -31.53392 -30.31879 -27.77460 -26.45845 -25.78691 -24.25784 -21.99925 -21.15615 -19.76878 -18.22142 -17.16695 -16.70843 -16.37812 -15.16530 -15.07417 -14.72469 -14.29036 -14.15104 -13.82199 -13.57341 -13.20632 -12.86720 -12.72789 -12.24855 -12.04175 -11.44534 -11.35357 -11.03042 -10.85041 -10.68198 -10.60803 -10.31157 -10.06766 -9.89925 -8.76008 -8.32122 -7.86264 -7.56524 -7.41023 -6.15882 -3.99545 1.76150 1.83686 3.24665 3.42019 3.49904 3.51098 3.69731 4.18041 4.31729 4.63151 4.79679 4.87830 4.94850 5.21131 5.41695 5.45248 5.54600 5.65577 5.75253 5.93349 6.05404 6.19563 6.25643 6.35796 6.60436 6.68511 6.85508 6.99470 7.17545 7.20896 7.36651 7.76061 8.00122 8.31855 8.67137 8.77269 9.06947 9.83437 11.23292 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032044 B = 0.006457 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.596996 B = 4335.267105 C = 4584.039259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.073 4.073 3 C -0.063 4.063 4 C 0.241 3.759 5 H 0.045 0.955 6 N -0.831 5.831 7 C -0.605 4.605 8 H 0.046 0.954 9 C 0.039 3.961 10 N -0.890 5.890 11 Si 1.062 2.938 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.290 1.290 15 C -0.123 4.123 16 C -0.119 4.119 17 C 0.023 3.977 18 C 0.045 3.955 19 O -0.306 6.306 20 C 0.021 3.979 21 C 0.022 3.978 22 O -0.314 6.314 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.326 0.674 27 H 0.303 0.697 28 H 0.290 0.710 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 -14.586 -2.439 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.065 4.065 4 C 0.132 3.868 5 H 0.062 0.938 6 N -0.359 5.359 7 C -0.643 4.643 8 H 0.064 0.936 9 C -0.171 4.171 10 N -0.524 5.524 11 Si 0.891 3.109 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.217 1.217 15 C -0.142 4.142 16 C -0.138 4.138 17 C -0.021 4.021 18 C 0.000 4.000 19 O -0.221 6.221 20 C -0.055 4.055 21 C -0.054 4.054 22 O -0.229 6.229 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.140 0.860 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.169 -12.972 -1.385 13.696 hybrid contribution 1.755 -2.381 -0.957 3.110 sum 5.925 -15.354 -2.343 16.623 Atomic orbital electron populations 1.20683 0.90436 1.03795 1.01581 1.19155 0.96803 0.89020 1.02490 1.21254 0.93781 0.97374 0.94134 1.18357 0.90642 0.80894 0.96924 0.93789 1.59453 1.22801 1.49776 1.03843 1.21622 1.41813 1.10598 0.90308 0.93572 1.25594 0.93520 0.92815 1.05132 1.70557 1.41955 1.37717 1.02147 0.83668 0.76323 0.76159 0.74736 1.20906 1.21656 1.21680 1.20746 0.94081 0.96826 1.02518 1.20263 0.99538 0.89431 1.04553 1.18685 0.89218 0.86395 1.07775 1.18732 0.89103 0.86252 1.05887 1.86294 1.37315 1.13662 1.84791 1.23520 0.93909 0.88358 0.99687 1.23510 0.94031 0.87900 0.99946 1.86242 1.37539 1.13751 1.85372 0.92324 0.92257 0.88771 0.85985 0.88660 0.89758 0.85681 0.85798 0.91053 0.86688 0.86771 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 8.97 36.00 0.32 -1.79 16 2 C -0.07 -1.52 5.89 -104.46 -0.62 -2.13 16 3 C -0.06 -1.35 4.98 -104.63 -0.52 -1.87 16 4 C 0.24 5.80 1.78 -70.02 -0.12 5.68 16 5 H 0.04 1.14 6.86 -51.93 -0.36 0.79 16 6 N -0.83 -18.64 7.39 -6.65 -0.05 -18.69 16 7 C -0.60 -16.47 7.91 -34.44 -0.27 -16.74 16 8 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 9 C 0.04 1.10 5.39 -17.82 -0.10 1.01 16 10 N -0.89 -26.36 13.51 55.43 0.75 -25.62 16 11 Si 1.06 25.12 29.90 -169.99 -5.08 20.04 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 C -0.12 -2.38 9.26 -39.59 -0.37 -2.74 16 16 C -0.12 -2.13 9.96 -39.42 -0.39 -2.52 16 17 C 0.02 0.42 6.49 -39.14 -0.25 0.17 16 18 C 0.04 0.85 6.47 -39.14 -0.25 0.59 16 19 O -0.31 -5.10 9.41 -32.85 -0.31 -5.41 16 20 C 0.02 0.25 7.26 37.40 0.27 0.52 16 21 C 0.02 0.25 7.26 37.40 0.27 0.52 16 22 O -0.31 -4.95 10.42 -32.85 -0.34 -5.30 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.06 1.07 7.50 -51.93 -0.39 0.68 16 25 H 0.09 2.06 6.14 -51.93 -0.32 1.74 16 26 H 0.33 7.05 7.20 -39.30 -0.28 6.77 16 27 H 0.30 6.00 9.06 -39.29 -0.36 5.64 16 28 H 0.29 8.57 6.39 -40.82 -0.26 8.31 16 29 H 0.13 2.24 6.28 -52.49 -0.33 1.91 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -31.42 279.51 -6.89 -38.30 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -4.03 Total: 11.77 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.03 Total: -19.32 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.70 Total: -44.30 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.65 Total: -10.70 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.42 -6.89 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260406708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.688 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds