Wall clock time and date at job start Mon Mar 30 2020 21:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38282 * 119.98787 * 2 1 4 4 C 1.38209 * 120.14400 * 180.23399 * 3 2 1 5 5 C 1.50700 * 119.92625 * 179.75327 * 4 3 2 6 6 H 1.08999 * 109.47545 * 359.71840 * 5 4 3 7 7 C 1.50704 * 109.47080 * 119.72399 * 5 4 3 8 8 H 1.07998 * 120.00226 * 4.73815 * 7 5 4 9 9 C 1.37884 * 119.99803 * 184.74478 * 7 5 4 10 10 N 1.31507 * 119.99892 * 187.23957 * 9 7 5 11 11 Si 1.86798 * 120.00169 * 7.23548 * 9 7 5 12 12 H 1.48500 * 109.47213 * 270.00488 * 11 9 7 13 13 H 1.48496 * 109.47257 * 149.99924 * 11 9 7 14 14 H 1.48507 * 109.46956 * 30.00313 * 11 9 7 15 15 C 1.52998 * 109.47021 * 239.72232 * 5 4 3 16 16 N 1.46894 * 109.47243 * 64.95344 * 15 5 4 17 17 C 1.38279 * 120.14473 * 359.47303 * 4 3 2 18 18 C 1.38504 * 120.02644 * 0.27845 * 17 4 3 19 19 C 1.38502 * 119.98669 * 179.71563 * 2 1 3 20 20 O 1.36506 * 131.53979 * 359.97438 * 19 2 1 21 21 C 1.43988 * 105.48633 * 162.73887 * 20 19 2 22 22 O 1.36500 * 131.53895 * 180.02562 * 18 17 4 23 23 H 1.08999 * 109.47725 * 270.28358 * 1 2 3 24 24 H 1.09000 * 109.47431 * 30.28411 * 1 2 3 25 25 H 1.09003 * 109.47792 * 150.28321 * 1 2 3 26 26 H 1.08004 * 119.92746 * 359.97438 * 3 2 1 27 27 H 0.97003 * 120.00292 * 354.94418 * 10 9 7 28 28 H 1.08997 * 109.47388 * 184.95774 * 15 5 4 29 29 H 1.09005 * 109.47260 * 304.95620 * 15 5 4 30 30 H 1.00906 * 111.00183 * 180.02562 * 16 15 5 31 31 H 1.00898 * 111.00113 * 303.95543 * 16 15 5 32 32 H 1.07997 * 119.98898 * 180.25641 * 17 4 3 33 33 H 1.08997 * 110.57386 * 268.56569 * 21 20 19 34 34 H 1.08997 * 110.56967 * 145.69631 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1977 0.0000 4 6 3.5801 1.2015 -0.0049 5 6 4.3284 2.5096 -0.0105 6 1 3.6168 3.3352 -0.0149 7 6 5.1936 2.5986 1.2202 8 1 5.2602 1.7585 1.8955 9 6 5.9003 3.7528 1.4840 10 7 6.7635 3.7832 2.4757 11 14 5.6317 5.2734 0.4327 12 1 6.5739 5.2544 -0.7149 13 1 5.8720 6.4894 1.2505 14 1 4.2355 5.2851 -0.0732 15 6 5.2085 2.5883 -1.2595 16 7 4.3579 2.6209 -2.4567 17 6 4.2778 0.0076 0.0012 18 6 3.5922 -1.1958 0.0064 19 6 2.1991 -1.1996 0.0060 20 8 1.7666 -2.4943 0.0128 21 6 2.9014 -3.2810 -0.3953 22 8 4.0319 -2.4880 0.0132 23 1 -0.3634 0.0051 1.0276 24 1 -0.3634 0.8874 -0.5182 25 1 -0.3635 -0.8925 -0.5094 26 1 1.6567 2.1322 -0.0004 27 1 6.8501 3.0190 3.0669 28 1 5.8152 3.4930 -1.2201 29 1 5.8601 1.7154 -1.3005 30 1 4.9161 2.6726 -3.2956 31 1 3.7395 1.8241 -2.4827 32 1 5.3578 0.0135 0.0016 33 1 2.9019 -3.4206 -1.4763 34 1 2.9041 -4.2435 0.1162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:07 Heat of formation + Delta-G solvation = -69.877953 kcal Electronic energy + Delta-G solvation = -18361.471047 eV Core-core repulsion = 15451.897808 eV Total energy + Delta-G solvation = -2909.573239 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.12959 -39.74174 -37.40759 -36.75214 -34.47190 -33.34224 -31.73109 -29.61130 -27.78270 -26.68118 -25.15881 -24.02869 -23.31561 -21.11547 -19.66002 -18.83052 -18.42413 -18.16688 -17.07363 -16.82066 -15.81753 -15.66327 -15.43776 -15.19724 -15.01354 -14.57103 -14.37689 -14.20876 -13.95045 -13.80977 -13.31831 -13.11767 -12.92169 -12.85204 -12.48089 -12.04993 -11.69222 -11.57025 -11.55519 -10.87110 -10.60234 -9.57355 -9.54533 -9.02373 -8.65771 -6.40996 0.20290 0.24768 1.47655 1.57135 1.76326 1.80813 2.47824 2.54803 2.59587 3.07990 3.48715 3.81143 3.84991 3.90546 4.05144 4.17235 4.22240 4.35318 4.48802 4.52302 4.62157 4.71525 4.81544 4.92995 5.01232 5.17274 5.23755 5.34129 5.43854 5.51585 5.74312 5.92788 6.02238 6.18467 6.31458 6.54491 6.71999 7.38740 8.64718 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.006900 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.385185 B = 4057.078295 C = 4279.957930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.062 4.062 3 C -0.117 4.117 4 C -0.030 4.030 5 C 0.055 3.945 6 H 0.050 0.950 7 C -0.584 4.584 8 H 0.018 0.982 9 C -0.021 4.021 10 N -0.943 5.943 11 Si 1.092 2.908 12 H -0.267 1.267 13 H -0.294 1.294 14 H -0.245 1.245 15 C 0.068 3.932 16 N -0.845 5.845 17 C -0.118 4.118 18 C 0.019 3.981 19 C 0.001 3.999 20 O -0.317 6.317 21 C 0.204 3.796 22 O -0.333 6.333 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.251 0.749 28 H 0.056 0.944 29 H 0.013 0.987 30 H 0.345 0.655 31 H 0.341 0.659 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 -9.590 -10.511 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.063 4.063 3 C -0.135 4.135 4 C -0.031 4.031 5 C 0.036 3.964 6 H 0.068 0.932 7 C -0.623 4.623 8 H 0.036 0.964 9 C -0.218 4.218 10 N -0.580 5.580 11 Si 0.915 3.085 12 H -0.193 1.193 13 H -0.221 1.221 14 H -0.169 1.169 15 C -0.063 4.063 16 N -0.375 5.375 17 C -0.137 4.137 18 C -0.025 4.025 19 C -0.043 4.043 20 O -0.234 6.234 21 C 0.093 3.907 22 O -0.250 6.250 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.170 0.830 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.565 -7.604 -10.349 17.282 hybrid contribution 0.906 -3.013 0.723 3.229 sum -10.659 -10.617 -9.627 17.861 Atomic orbital electron populations 1.20744 0.87737 1.04152 1.03321 1.19227 0.98058 0.87907 1.01070 1.21008 0.92747 0.97687 1.02052 1.19852 0.93928 0.94179 0.95120 1.18223 0.94133 0.91351 0.92743 0.93163 1.22171 1.30575 1.00873 1.08664 0.96364 1.27223 0.91571 1.04147 0.98895 1.70946 1.34080 1.34231 1.18698 0.83419 0.78984 0.71958 0.74184 1.19261 1.22136 1.16870 1.22055 0.94728 0.98924 0.90576 1.58798 1.24476 1.49920 1.04338 1.19846 0.99678 0.88680 1.05493 1.19830 0.92288 0.85578 1.04759 1.19612 0.90802 0.86146 1.07719 1.87256 1.36587 1.13940 1.85570 1.26097 0.69460 0.93252 1.01858 1.87302 1.37733 1.14511 1.85458 0.90447 0.89004 0.90843 0.83050 0.94008 0.92544 0.96836 0.84182 0.84662 0.87482 0.87835 0.82189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 10.00 71.23 0.71 -1.55 16 2 C -0.06 -1.89 5.89 -19.79 -0.12 -2.01 16 3 C -0.12 -3.97 9.32 22.27 0.21 -3.76 16 4 C -0.03 -1.23 3.77 -19.86 -0.07 -1.30 16 5 C 0.05 2.48 1.73 -12.29 -0.02 2.46 16 6 H 0.05 2.28 6.36 -2.39 -0.02 2.26 16 7 C -0.58 -32.80 8.62 25.60 0.22 -32.58 16 8 H 0.02 1.14 7.77 -2.91 -0.02 1.12 16 9 C -0.02 -1.21 5.42 84.66 0.46 -0.75 16 10 N -0.94 -59.36 13.69 21.45 0.29 -59.07 16 11 Si 1.09 50.29 25.39 68.60 1.74 52.03 16 12 H -0.27 -11.45 6.73 99.48 0.67 -10.78 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 14 H -0.24 -10.16 6.38 99.48 0.63 -9.53 16 15 C 0.07 2.77 5.74 86.30 0.50 3.27 16 16 N -0.85 -27.18 9.62 -186.73 -1.80 -28.97 16 17 C -0.12 -4.89 8.61 22.34 0.19 -4.70 16 18 C 0.02 0.73 7.15 22.59 0.16 0.89 16 19 C 0.00 0.04 6.81 22.59 0.15 0.19 16 20 O -0.32 -9.08 11.39 -76.12 -0.87 -9.95 16 21 C 0.20 4.63 8.89 113.37 1.01 5.64 16 22 O -0.33 -11.12 11.40 -76.05 -0.87 -11.99 16 23 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.09 1.63 8.09 -2.39 -0.02 1.61 16 25 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 26 H 0.15 4.53 7.94 -2.91 -0.02 4.51 16 27 H 0.25 16.12 8.72 -92.71 -0.81 15.32 16 28 H 0.06 2.43 4.42 -2.39 -0.01 2.42 16 29 H 0.01 0.57 7.22 -2.38 -0.02 0.55 16 30 H 0.35 9.19 9.08 -89.69 -0.81 8.38 16 31 H 0.34 10.27 8.07 -89.70 -0.72 9.55 16 32 H 0.11 4.82 7.54 -2.91 -0.02 4.80 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -69.10 281.39 1.36 -67.74 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: -0.54 Total: 24.41 kcal Atomic # 6 Polarization: -37.60 SS G_CDS: 3.40 Total: -34.20 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.50 Total: -88.05 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.73 Total: -21.94 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 1.74 Total: 52.03 kcal Total: -69.10 1.36 -67.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.135 kcal (2) G-P(sol) polarization free energy of solvation -69.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds