Wall clock time and date at job start Mon Mar 30 2020 21:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47145 * 2 1 4 4 C 1.50699 * 109.47307 * 239.99778 * 2 1 3 5 5 O 1.20825 * 120.00214 * 260.00609 * 4 2 1 6 6 O 1.34229 * 119.99878 * 79.99924 * 4 2 1 7 7 N 1.46502 * 109.46816 * 120.00123 * 2 1 3 8 8 C 1.46505 * 119.99617 * 234.45549 * 7 2 1 9 9 C 1.50696 * 109.47109 * 269.99916 * 8 7 2 10 10 H 1.08004 * 120.00501 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99839 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99996 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47329 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47101 * 120.00449 * 13 11 9 16 16 H 1.48497 * 109.47336 * 240.00120 * 13 11 9 17 17 C 1.39668 * 120.00114 * 54.45902 * 7 2 1 18 18 C 1.38913 * 120.07227 * 185.93778 * 17 7 2 19 19 C 1.38107 * 119.92326 * 179.72316 * 18 17 7 20 20 C 1.38287 * 120.07554 * 0.27734 * 19 18 17 21 21 C 1.38289 * 120.14608 * 359.97438 * 20 19 18 22 22 C 1.38098 * 120.07661 * 0.02562 * 21 20 19 23 23 H 1.09011 * 109.46850 * 314.33044 * 1 2 3 24 24 H 1.09004 * 109.47076 * 74.32645 * 1 2 3 25 25 H 1.08998 * 109.47527 * 194.33008 * 1 2 3 26 26 H 0.96702 * 116.99866 * 180.02562 * 6 4 2 27 27 H 1.08998 * 109.47136 * 30.00147 * 8 7 2 28 28 H 1.09006 * 109.46486 * 150.00322 * 8 7 2 29 29 H 0.97001 * 119.99938 * 179.97438 * 12 11 9 30 30 H 1.07994 * 120.04009 * 359.97438 * 18 17 7 31 31 H 1.08000 * 119.96466 * 180.30144 * 19 18 17 32 32 H 1.07998 * 119.92938 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.95710 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.03598 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4049 -1.8574 -1.1560 6 8 2.0657 -0.0691 -2.4091 7 7 2.0182 -0.6907 1.1962 8 6 2.9578 -0.0190 2.0976 9 6 4.3699 -0.3113 1.6600 10 1 4.5496 -0.9347 0.7965 11 6 5.4325 0.2171 2.3619 12 7 5.2137 0.9758 3.4136 13 14 7.1828 -0.1447 1.8190 14 1 7.1582 -1.0162 0.6169 15 1 7.8731 1.1290 1.4925 16 1 7.9088 -0.8340 2.9158 17 6 1.5881 -1.9894 1.4772 18 6 1.9511 -2.5999 2.6710 19 6 1.5193 -3.8821 2.9483 20 6 0.7312 -4.5603 2.0366 21 6 0.3724 -3.9574 0.8449 22 6 0.8007 -2.6755 0.5613 23 1 -0.3633 0.7182 0.7352 24 1 -0.3633 0.2776 -0.9895 25 1 -0.3634 -0.9956 0.2543 26 1 2.3956 -0.5661 -3.1702 27 1 2.7836 1.0566 2.0682 28 1 2.8096 -0.3835 3.1141 29 1 5.9613 1.3473 3.9077 30 1 2.5668 -2.0710 3.3833 31 1 1.7971 -4.3555 3.8784 32 1 0.3945 -5.5627 2.2560 33 1 -0.2436 -4.4897 0.1352 34 1 0.5197 -2.2051 -0.3694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019980607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:37 Heat of formation + Delta-G solvation = -43.681746 kcal Electronic energy + Delta-G solvation = -18658.971240 eV Core-core repulsion = 15750.533954 eV Total energy + Delta-G solvation = -2908.437286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35241 -38.55513 -36.08819 -35.40739 -33.05195 -31.44263 -29.93044 -28.98233 -26.38003 -24.58697 -22.99622 -21.89162 -21.10631 -19.46991 -17.86407 -17.16049 -16.47583 -15.60989 -15.30603 -15.13114 -15.03051 -14.21203 -13.66569 -13.47447 -13.14678 -12.77960 -12.48533 -12.14968 -12.02180 -11.96406 -11.43907 -11.30524 -11.13347 -11.03668 -10.70984 -10.61825 -10.32201 -9.98984 -9.85810 -9.70319 -8.92037 -8.52377 -8.15283 -6.56229 -6.06518 -4.18848 2.16099 2.29885 2.65684 3.24757 3.31722 3.33054 3.39930 3.96495 4.39225 4.63799 5.18999 5.24172 5.34116 5.49299 5.56456 5.60654 5.73075 5.85564 5.98640 6.12279 6.26306 6.33633 6.41902 6.64469 6.83384 6.92862 7.06958 7.19811 7.24775 7.36073 7.61933 7.80580 8.08499 8.14019 8.31295 8.40510 8.91031 9.48325 10.93370 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.009292 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.534424 B = 3012.647529 C = 3801.735374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.171 3.829 3 H 0.120 0.880 4 C 0.455 3.545 5 O -0.489 6.489 6 O -0.524 6.524 7 N -0.599 5.599 8 C 0.250 3.750 9 C -0.532 4.532 10 H 0.060 0.940 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.239 3.761 18 C -0.181 4.181 19 C -0.085 4.085 20 C -0.194 4.194 21 C -0.091 4.091 22 C -0.183 4.183 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.400 0.600 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -2.826 -6.202 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.063 3.937 3 H 0.138 0.862 4 C 0.294 3.706 5 O -0.374 6.374 6 O -0.336 6.336 7 N -0.308 5.308 8 C 0.131 3.869 9 C -0.571 4.571 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.136 3.864 18 C -0.203 4.203 19 C -0.104 4.104 20 C -0.214 4.214 21 C -0.110 4.110 22 C -0.206 4.206 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.258 0.742 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.574 -2.624 -5.707 11.450 hybrid contribution 1.575 -0.517 -0.887 1.880 sum -7.999 -3.141 -6.595 10.832 Atomic orbital electron populations 1.22466 0.92891 1.05054 1.02985 1.20268 0.94821 0.97261 0.81396 0.86209 1.24731 0.75184 0.86010 0.84627 1.90775 1.42865 1.18518 1.85224 1.84574 1.79536 1.49804 1.19673 1.46997 1.48413 1.12615 1.22782 1.19411 0.86303 0.92283 0.88927 1.21648 0.90858 1.30980 1.13614 0.92154 1.24935 0.99307 0.94872 0.94817 1.69929 1.31714 1.33360 1.18344 0.86488 0.84393 0.78085 0.78830 1.19787 1.20922 1.20788 1.17738 0.91315 0.84733 0.92601 1.20866 1.05421 0.96363 0.97628 1.20782 0.96881 0.94195 0.98522 1.20672 1.04573 1.00014 0.96181 1.20687 0.99320 0.94528 0.96468 1.20783 1.04452 0.96137 0.99181 0.90569 0.91308 0.89728 0.74177 0.94914 0.93885 0.92688 0.85229 0.87088 0.87678 0.87561 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.89 37.16 0.33 -2.08 16 2 C 0.17 2.99 3.19 -69.08 -0.22 2.77 16 3 H 0.12 2.03 7.76 -51.93 -0.40 1.62 16 4 C 0.46 8.09 6.66 36.01 0.24 8.33 16 5 O -0.49 -10.30 13.88 -18.75 -0.26 -10.56 16 6 O -0.52 -7.34 13.42 -39.25 -0.53 -7.87 16 7 N -0.60 -12.62 2.40 -166.86 -0.40 -13.02 16 8 C 0.25 6.11 5.03 -5.19 -0.03 6.08 16 9 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 10 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.24 4.99 5.64 -83.79 -0.47 4.51 16 18 C -0.18 -3.76 9.26 -39.38 -0.36 -4.13 16 19 C -0.08 -1.53 10.04 -39.61 -0.40 -1.93 16 20 C -0.19 -3.26 10.04 -39.54 -0.40 -3.66 16 21 C -0.09 -1.56 10.04 -39.61 -0.40 -1.96 16 22 C -0.18 -3.44 5.83 -39.38 -0.23 -3.67 16 23 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.07 0.78 8.06 -51.93 -0.42 0.36 16 25 H 0.08 1.23 4.59 -51.93 -0.24 0.99 16 26 H 0.40 3.92 9.10 45.56 0.41 4.34 16 27 H 0.03 0.82 7.88 -51.93 -0.41 0.41 16 28 H 0.04 1.11 5.99 -51.93 -0.31 0.79 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.13 2.87 6.03 -52.49 -0.32 2.56 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.12 2.04 3.97 -52.49 -0.21 1.83 16 LS Contribution 285.15 15.07 4.30 4.30 Total: -1.00 -31.50 285.15 -6.66 -38.16 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.13 Total: 5.98 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.36 Total: -9.04 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.34 Total: -37.64 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.79 Total: -18.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.50 -6.66 -38.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019980607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds