Wall clock time and date at job start Mon Mar 30 2020 21:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47145 * 2 1 4 4 C 1.50699 * 109.47307 * 239.99778 * 2 1 3 5 5 O 1.20825 * 120.00214 * 260.00609 * 4 2 1 6 6 O 1.34229 * 119.99878 * 79.99924 * 4 2 1 7 7 N 1.46502 * 109.46816 * 120.00123 * 2 1 3 8 8 C 1.46505 * 119.99617 * 234.45549 * 7 2 1 9 9 C 1.50696 * 109.47109 * 269.99916 * 8 7 2 10 10 H 1.08004 * 120.00501 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99839 * 180.02562 * 9 8 7 12 12 N 1.31513 * 119.99996 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47329 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47101 * 120.00449 * 13 11 9 16 16 H 1.48497 * 109.47336 * 240.00120 * 13 11 9 17 17 C 1.39668 * 120.00114 * 54.45902 * 7 2 1 18 18 C 1.38913 * 120.07227 * 185.93778 * 17 7 2 19 19 C 1.38107 * 119.92326 * 179.72316 * 18 17 7 20 20 C 1.38287 * 120.07554 * 0.27734 * 19 18 17 21 21 C 1.38289 * 120.14608 * 359.97438 * 20 19 18 22 22 C 1.38098 * 120.07661 * 0.02562 * 21 20 19 23 23 H 1.09011 * 109.46850 * 314.33044 * 1 2 3 24 24 H 1.09004 * 109.47076 * 74.32645 * 1 2 3 25 25 H 1.08998 * 109.47527 * 194.33008 * 1 2 3 26 26 H 0.96702 * 116.99866 * 180.02562 * 6 4 2 27 27 H 1.08998 * 109.47136 * 30.00147 * 8 7 2 28 28 H 1.09006 * 109.46486 * 150.00322 * 8 7 2 29 29 H 0.97001 * 119.99938 * 179.97438 * 12 11 9 30 30 H 1.07994 * 120.04009 * 359.97438 * 18 17 7 31 31 H 1.08000 * 119.96466 * 180.30144 * 19 18 17 32 32 H 1.07998 * 119.92938 * 180.02562 * 20 19 18 33 33 H 1.08002 * 119.95710 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.03598 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.4049 -1.8574 -1.1560 6 8 2.0657 -0.0691 -2.4091 7 7 2.0182 -0.6907 1.1962 8 6 2.9578 -0.0190 2.0976 9 6 4.3699 -0.3113 1.6600 10 1 4.5496 -0.9347 0.7965 11 6 5.4325 0.2171 2.3619 12 7 5.2137 0.9758 3.4136 13 14 7.1828 -0.1447 1.8190 14 1 7.1582 -1.0162 0.6169 15 1 7.8731 1.1290 1.4925 16 1 7.9088 -0.8340 2.9158 17 6 1.5881 -1.9894 1.4772 18 6 1.9511 -2.5999 2.6710 19 6 1.5193 -3.8821 2.9483 20 6 0.7312 -4.5603 2.0366 21 6 0.3724 -3.9574 0.8449 22 6 0.8007 -2.6755 0.5613 23 1 -0.3633 0.7182 0.7352 24 1 -0.3633 0.2776 -0.9895 25 1 -0.3634 -0.9956 0.2543 26 1 2.3956 -0.5661 -3.1702 27 1 2.7836 1.0566 2.0682 28 1 2.8096 -0.3835 3.1141 29 1 5.9613 1.3473 3.9077 30 1 2.5668 -2.0710 3.3833 31 1 1.7971 -4.3555 3.8784 32 1 0.3945 -5.5627 2.2560 33 1 -0.2436 -4.4897 0.1352 34 1 0.5197 -2.2051 -0.3694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019980607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:08:37 Heat of formation + Delta-G solvation = -63.374963 kcal Electronic energy + Delta-G solvation = -18659.825202 eV Core-core repulsion = 15750.533954 eV Total energy + Delta-G solvation = -2909.291248 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75582 -39.97099 -37.48315 -36.84379 -35.01882 -32.97325 -31.33599 -30.61202 -28.14580 -25.93018 -24.81736 -23.30402 -22.58515 -20.92284 -19.26045 -18.61608 -18.50609 -17.11863 -16.78186 -16.68639 -16.44608 -15.97546 -15.12301 -14.88282 -14.60766 -14.46497 -13.88585 -13.73166 -13.46336 -13.24871 -13.11088 -12.93519 -12.71874 -12.58177 -12.44420 -12.29073 -12.05329 -11.72665 -11.46220 -11.18338 -10.65162 -10.57284 -9.58606 -8.40047 -7.89880 -6.38086 0.72124 0.87416 1.26933 1.31252 1.34024 1.45571 2.01402 2.31837 2.54126 3.03875 3.19575 3.97134 4.05444 4.14332 4.27996 4.32559 4.47622 4.65324 4.76175 4.78990 4.87578 4.93194 5.09958 5.17325 5.23261 5.32683 5.55828 5.64278 5.68901 5.76922 5.88401 6.05649 6.20341 6.43732 6.75930 6.85146 7.07069 7.33034 8.80519 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017779 B = 0.009292 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.534424 B = 3012.647529 C = 3801.735374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.120 0.880 4 C 0.461 3.539 5 O -0.527 6.527 6 O -0.510 6.510 7 N -0.609 5.609 8 C 0.266 3.734 9 C -0.541 4.541 10 H 0.037 0.963 11 C 0.019 3.981 12 N -0.919 5.919 13 Si 0.953 3.047 14 H -0.281 1.281 15 H -0.270 1.270 16 H -0.275 1.275 17 C 0.215 3.785 18 C -0.214 4.214 19 C -0.089 4.089 20 C -0.188 4.188 21 C -0.092 4.092 22 C -0.185 4.185 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.077 0.923 26 H 0.422 0.578 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.268 0.732 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 -3.739 -7.516 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.138 0.862 4 C 0.302 3.698 5 O -0.415 6.415 6 O -0.323 6.323 7 N -0.319 5.319 8 C 0.145 3.855 9 C -0.580 4.580 10 H 0.055 0.945 11 C -0.180 4.180 12 N -0.559 5.559 13 Si 0.779 3.221 14 H -0.206 1.206 15 H -0.195 1.195 16 H -0.201 1.201 17 C 0.114 3.886 18 C -0.236 4.236 19 C -0.108 4.108 20 C -0.207 4.207 21 C -0.110 4.110 22 C -0.207 4.207 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.283 0.717 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.149 0.851 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.467 -3.528 -7.056 13.107 hybrid contribution 1.803 -0.267 -0.535 1.899 sum -8.664 -3.795 -7.590 12.128 Atomic orbital electron populations 1.22402 0.89725 1.05006 1.04999 1.20579 0.97231 0.96697 0.80255 0.86203 1.24665 0.74239 0.85383 0.85507 1.90759 1.44683 1.20112 1.85957 1.84510 1.78999 1.49378 1.19447 1.46812 1.48312 1.13081 1.23688 1.18931 0.85980 0.91707 0.88849 1.21750 0.92750 1.30628 1.12911 0.94475 1.25633 1.02802 0.94733 0.94876 1.70003 1.32896 1.33936 1.19021 0.85587 0.80253 0.78193 0.78097 1.20629 1.19527 1.20087 1.17991 0.92503 0.84891 0.93261 1.20868 1.06898 0.97948 0.97890 1.21065 0.96698 0.93174 0.99822 1.21085 1.03042 1.01232 0.95372 1.21147 0.98839 0.93883 0.97164 1.20956 1.03944 0.96828 0.98984 0.89649 0.88417 0.90400 0.71739 0.95891 0.95969 0.92280 0.88143 0.85051 0.84146 0.84170 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 8.89 71.98 0.64 -3.57 16 2 C 0.16 5.54 3.19 44.24 0.14 5.68 16 3 H 0.12 4.07 7.76 -2.39 -0.02 4.05 16 4 C 0.46 15.99 6.66 71.24 0.47 16.47 16 5 O -0.53 -22.00 13.88 21.97 0.31 -21.69 16 6 O -0.51 -13.25 13.42 -51.40 -0.69 -13.94 16 7 N -0.61 -26.38 2.40 -681.84 -1.64 -28.01 16 8 C 0.27 13.64 5.03 85.63 0.43 14.07 16 9 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 10 H 0.04 2.25 7.81 -2.91 -0.02 2.22 16 11 C 0.02 1.10 5.46 84.66 0.46 1.56 16 12 N -0.92 -53.07 13.29 21.45 0.28 -52.79 16 13 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 14 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 17 C 0.22 9.14 5.64 38.21 0.22 9.35 16 18 C -0.21 -9.20 9.26 22.40 0.21 -8.99 16 19 C -0.09 -3.15 10.04 22.25 0.22 -2.93 16 20 C -0.19 -5.79 10.04 22.29 0.22 -5.57 16 21 C -0.09 -2.90 10.04 22.25 0.22 -2.67 16 22 C -0.19 -6.76 5.83 22.40 0.13 -6.63 16 23 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.10 1.93 8.06 -2.38 -0.02 1.91 16 25 H 0.08 2.14 4.59 -2.39 -0.01 2.13 16 26 H 0.42 7.25 9.10 -74.06 -0.67 6.58 16 27 H 0.02 1.20 7.88 -2.39 -0.02 1.18 16 28 H 0.02 1.23 5.99 -2.38 -0.01 1.21 16 29 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.10 4.81 6.03 -2.91 -0.02 4.79 16 31 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 32 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 34 H 0.12 4.23 3.97 -2.91 -0.01 4.22 16 Total: -1.00 -68.99 285.15 4.35 -64.63 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.45 Total: 18.55 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 3.61 Total: -13.80 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.35 Total: -80.80 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.39 Total: -35.63 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -68.99 4.35 -64.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019980607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.257 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds