Wall clock time and date at job start Mon Mar 30 2020 21:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 117.00148 * 2 1 4 4 C 1.38732 * 120.05518 * 180.02562 * 3 2 1 5 5 C 1.38148 * 119.94267 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05682 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94312 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.47491 * 345.94382 * 7 6 5 9 9 C 1.50699 * 109.47003 * 105.94368 * 7 6 5 10 10 H 1.07996 * 120.00206 * 0.02562 * 9 7 6 11 11 C 1.37883 * 119.99932 * 179.97438 * 9 7 6 12 12 N 1.31513 * 119.99986 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99691 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47300 * 60.01124 * 13 11 9 15 15 H 1.48506 * 109.46716 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47204 * 300.00106 * 13 11 9 17 17 N 1.46504 * 109.47322 * 225.94546 * 7 6 5 18 18 C 1.34776 * 119.99814 * 85.29672 * 17 7 6 19 19 C 1.50702 * 119.99805 * 184.86553 * 18 17 7 20 20 O 1.21278 * 119.99903 * 4.87469 * 18 17 7 21 21 C 1.38262 * 120.11051 * 0.27835 * 6 5 4 22 22 C 1.38146 * 120.05858 * 359.45463 * 21 6 5 23 23 H 1.08994 * 109.47387 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47151 * 300.00868 * 1 2 3 25 25 H 1.09005 * 109.46983 * 59.99950 * 1 2 3 26 26 H 1.08003 * 120.02954 * 359.94735 * 4 3 2 27 27 H 1.08002 * 119.97070 * 180.02562 * 5 4 3 28 28 H 0.97000 * 119.99983 * 179.97438 * 12 11 9 29 29 H 0.97002 * 119.99971 * 265.30490 * 17 7 6 30 30 H 1.09004 * 109.47085 * 0.02562 * 19 18 17 31 31 H 1.08999 * 109.46818 * 120.00250 * 19 18 17 32 32 H 1.09000 * 109.47126 * 240.00419 * 19 18 17 33 33 H 1.08003 * 119.97084 * 179.69911 * 21 6 5 34 34 H 1.08000 * 120.03302 * 180.27526 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0561 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0395 4.8898 0.2465 9 6 3.8661 5.6422 -1.3693 10 1 3.3459 5.1190 -2.1580 11 6 4.4193 6.8815 -1.6125 12 7 5.0523 7.5190 -0.6520 13 14 4.2697 7.6550 -3.3062 14 1 2.8347 7.8302 -3.6454 15 1 4.9441 8.9781 -3.3074 16 1 4.9121 6.7717 -4.3123 17 7 3.3526 5.8903 0.9895 18 6 3.7456 5.8420 2.2778 19 6 3.0211 6.6575 3.3176 20 8 4.6823 5.1424 2.6002 21 6 1.9212 3.6047 0.0042 22 6 1.2915 2.3751 -0.0008 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 4.0209 0.3798 -0.0001 27 1 5.1346 2.5749 -0.0019 28 1 5.4419 8.3907 -0.8232 29 1 2.6501 6.5023 0.7193 30 1 2.2149 7.2173 2.8435 31 1 2.6052 5.9933 4.0752 32 1 3.7190 7.3514 3.7863 33 1 1.3343 4.5114 0.0087 34 1 0.2129 2.3202 -0.0008 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238398708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:33 Heat of formation + Delta-G solvation = -79.300322 kcal Electronic energy + Delta-G solvation = -18046.503791 eV Core-core repulsion = 15136.521968 eV Total energy + Delta-G solvation = -2909.981824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.06759 -40.11847 -38.41741 -36.02022 -33.93794 -32.07020 -31.88323 -30.05862 -28.52027 -27.65549 -24.74966 -23.42993 -21.99564 -20.90264 -19.01863 -18.88065 -17.39400 -17.12702 -16.84492 -16.54842 -16.42907 -15.83937 -15.57689 -14.93599 -14.58310 -14.42273 -14.29005 -13.60423 -13.51969 -13.25243 -13.16710 -12.89515 -12.76323 -12.68578 -12.46105 -11.98496 -11.73989 -11.65522 -11.36276 -10.84510 -10.51181 -9.85188 -9.50597 -8.91006 -8.17139 -6.40697 0.49785 0.60981 1.44013 1.46114 1.53775 2.06315 2.38890 2.45445 2.73504 3.02697 3.34675 3.96983 4.03629 4.23474 4.38872 4.41362 4.44968 4.58526 4.60961 4.63955 4.74400 4.76092 4.84936 5.04900 5.12475 5.34762 5.39556 5.53623 5.64673 5.84646 5.93574 5.99223 6.22969 6.55565 6.71800 7.21744 7.32894 7.77705 8.84807 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.007534 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.077250 B = 3715.799849 C = 4623.833791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.104 3.896 4 C -0.159 4.159 5 C -0.096 4.096 6 C -0.110 4.110 7 C 0.307 3.693 8 H 0.002 0.998 9 C -0.542 4.542 10 H 0.064 0.936 11 C 0.032 3.968 12 N -0.898 5.898 13 Si 0.962 3.038 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.675 5.675 18 C 0.487 3.513 19 C -0.156 4.156 20 O -0.627 6.627 21 C -0.074 4.074 22 C -0.203 4.203 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.112 0.888 28 H 0.265 0.735 29 H 0.396 0.604 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.026 -6.398 1.735 13.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.059 3.941 4 C -0.178 4.178 5 C -0.115 4.115 6 C -0.111 4.111 7 C 0.204 3.796 8 H 0.020 0.980 9 C -0.581 4.581 10 H 0.082 0.918 11 C -0.171 4.171 12 N -0.534 5.534 13 Si 0.787 3.213 14 H -0.186 1.186 15 H -0.211 1.211 16 H -0.203 1.203 17 N -0.321 5.321 18 C 0.275 3.725 19 C -0.215 4.215 20 O -0.512 6.512 21 C -0.093 4.093 22 C -0.221 4.221 23 H 0.140 0.860 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.156 0.844 27 H 0.130 0.870 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.147 0.853 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.227 -6.913 1.987 13.334 hybrid contribution 0.158 1.048 -0.936 1.414 sum -11.068 -5.865 1.051 12.570 Atomic orbital electron populations 1.23325 0.76632 1.05481 1.02132 1.86004 1.23380 1.26420 1.89146 1.18975 0.92130 0.84735 0.98259 1.20451 0.92239 0.97922 1.07140 1.20905 0.99663 0.91917 0.98990 1.20596 0.94917 0.95908 0.99697 1.17160 0.90779 0.83979 0.87694 0.98008 1.21377 1.37479 1.03499 0.95703 0.91821 1.25825 0.93436 0.97470 1.00416 1.70164 1.34705 1.14498 1.34047 0.85555 0.78923 0.77160 0.79640 1.18601 1.21132 1.20284 1.46525 1.38712 1.39992 1.06881 1.21589 0.83659 0.82181 0.85088 1.21785 1.01513 1.00576 0.97664 1.90567 1.32036 1.46280 1.82338 1.20827 0.93408 0.97672 0.97350 1.21410 1.00890 0.91428 1.08408 0.86028 0.91954 0.91932 0.84407 0.87019 0.92613 0.76921 0.88615 0.88068 0.89198 0.85295 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -9.52 10.50 -92.37 -0.97 -10.49 16 3 C 0.10 3.46 6.69 22.51 0.15 3.62 16 4 C -0.16 -5.81 9.99 22.37 0.22 -5.59 16 5 C -0.10 -4.10 9.66 22.25 0.21 -3.89 16 6 C -0.11 -4.90 4.85 -19.85 -0.10 -5.00 16 7 C 0.31 15.63 2.08 43.50 0.09 15.72 16 8 H 0.00 0.12 7.30 -2.39 -0.02 0.11 16 9 C -0.54 -28.28 8.54 25.60 0.22 -28.06 16 10 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 11 C 0.03 1.66 5.39 84.66 0.46 2.11 16 12 N -0.90 -49.61 12.77 21.45 0.27 -49.34 16 13 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 14 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 15 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 N -0.67 -30.58 3.84 -449.68 -1.72 -32.30 16 18 C 0.49 21.86 7.90 87.66 0.69 22.55 16 19 C -0.16 -4.76 10.39 71.24 0.74 -4.02 16 20 O -0.63 -34.34 16.73 -3.02 -0.05 -34.39 16 21 C -0.07 -2.79 9.26 22.25 0.21 -2.59 16 22 C -0.20 -6.45 9.04 22.37 0.20 -6.25 16 23 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.01 7.66 -2.38 -0.02 0.99 16 25 H 0.06 1.02 7.66 -2.38 -0.02 1.00 16 26 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 27 H 0.11 4.87 7.99 -2.91 -0.02 4.84 16 28 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.40 16.28 8.44 -92.71 -0.78 15.50 16 30 H 0.09 2.35 7.92 -2.39 -0.02 2.33 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.13 4.48 7.89 -2.91 -0.02 4.46 16 34 H 0.15 3.68 6.30 -2.91 -0.02 3.66 16 Total: -1.00 -69.42 297.97 4.09 -65.33 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.33 Total: 28.15 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.21 Total: -9.96 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.45 Total: -81.64 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.02 Total: -44.88 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -69.42 4.09 -65.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238398708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.974 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds