Wall clock time and date at job start Mon Mar 30 2020 21:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35936 * 117.00234 * 2 1 4 4 C 1.38797 * 119.96791 * 179.97438 * 3 2 1 5 5 C 1.37993 * 120.03955 * 180.02562 * 4 3 2 6 6 C 1.39084 * 119.96219 * 359.97438 * 5 4 3 7 7 N 1.39414 * 120.03075 * 180.02562 * 6 5 4 8 8 C 1.36825 * 120.00199 * 353.83036 * 7 6 5 9 9 H 1.08000 * 120.00105 * 130.58204 * 8 7 6 10 10 C 1.38759 * 120.00273 * 310.58623 * 8 7 6 11 11 N 1.31616 * 119.99901 * 341.16160 * 10 8 7 12 12 Si 1.86804 * 120.00310 * 161.15814 * 10 8 7 13 13 H 1.48506 * 109.46904 * 59.99819 * 12 10 8 14 14 H 1.48500 * 109.47334 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47025 * 300.00039 * 12 10 8 16 16 C 1.46492 * 119.99752 * 173.83603 * 7 6 5 17 17 C 1.53368 * 114.56709 * 244.11682 * 16 7 6 18 18 O 1.43361 * 88.49500 * 220.44617 * 17 16 7 19 19 C 1.43350 * 88.32163 * 28.12517 * 18 17 16 20 20 C 1.39077 * 119.93604 * 0.27050 * 6 5 4 21 21 C 1.38009 * 119.95957 * 359.49171 * 20 6 5 22 22 H 1.09000 * 109.47115 * 59.99399 * 1 2 3 23 23 H 1.08993 * 109.47722 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46911 * 299.99736 * 1 2 3 25 25 H 1.08006 * 119.98003 * 0.02562 * 4 3 2 26 26 H 1.07998 * 120.02341 * 179.97438 * 5 4 3 27 27 H 0.97003 * 120.00119 * 184.99277 * 11 10 8 28 28 H 1.09005 * 113.57275 * 18.38905 * 16 7 6 29 29 H 1.08992 * 113.39526 * 105.52114 * 17 16 7 30 30 H 1.09004 * 113.38829 * 335.36031 * 17 16 7 31 31 H 1.08993 * 113.39200 * 86.74976 * 19 18 17 32 32 H 1.09001 * 113.38880 * 216.90974 * 19 18 17 33 33 H 1.07995 * 120.02036 * 179.70516 * 20 6 5 34 34 H 1.08005 * 119.97869 * 180.20926 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 3.4323 1.2830 0.0005 5 6 4.0604 2.5117 0.0011 6 6 3.3036 3.6786 0.0005 7 7 3.9367 4.9208 0.0005 8 6 5.2969 4.9954 0.1284 9 1 5.8718 5.5969 -0.5601 10 6 5.9377 4.2983 1.1427 11 7 5.2541 3.8773 2.1856 12 14 7.7708 3.9573 1.0280 13 1 8.5098 5.2433 0.9540 14 1 8.2099 3.2018 2.2287 15 1 8.0498 3.1553 -0.1903 16 6 3.1455 6.1460 -0.1363 17 6 3.4307 6.9503 -1.4106 18 8 3.3437 8.1486 -0.6284 19 6 3.7757 7.3884 0.5075 20 6 1.9148 3.6052 0.0051 21 6 1.2897 2.3748 -0.0004 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 4.0197 0.3766 0.0005 26 1 5.1389 2.5673 0.0019 27 1 5.7133 3.4542 2.9279 28 1 2.0870 6.0085 0.0853 29 1 2.6449 6.8653 -2.1610 30 1 4.4248 6.7727 -1.8209 31 1 4.8600 7.3247 0.5985 32 1 3.2926 7.6876 1.4376 33 1 1.3259 4.5104 0.0095 34 1 0.2112 2.3174 -0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261118708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:12 Heat of formation + Delta-G solvation = 1.924900 kcal Electronic energy + Delta-G solvation = -18429.543059 eV Core-core repulsion = 15523.083425 eV Total energy + Delta-G solvation = -2906.459634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16981 -39.01460 -37.10963 -34.40847 -32.01653 -29.93245 -28.86442 -27.23739 -26.56943 -25.50903 -24.19883 -21.73560 -20.60591 -19.70542 -17.46813 -17.08025 -16.36315 -15.64331 -15.26204 -15.05802 -15.00888 -14.70074 -14.06425 -13.70893 -13.02866 -12.62236 -12.48375 -12.20936 -11.86344 -11.71564 -11.41974 -11.39159 -11.20429 -10.84323 -10.82214 -10.46516 -10.32020 -10.14340 -9.75756 -9.09442 -8.79943 -8.20917 -7.88311 -6.50651 -5.85961 -4.05150 2.46020 2.75003 3.14247 3.21022 3.21704 4.03915 4.10064 4.60024 4.80689 4.87660 4.93003 5.34026 5.45785 5.54428 5.55997 5.69396 5.83372 5.89382 5.91398 6.09118 6.14632 6.39089 6.45702 6.53049 6.62876 6.72364 6.84300 6.99973 7.21987 7.37608 7.40445 7.63387 7.81269 8.17058 8.33349 8.81313 9.21786 9.75895 10.66628 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017956 B = 0.009135 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.994318 B = 3064.272177 C = 4337.861640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.331 6.331 3 C 0.018 3.982 4 C -0.109 4.109 5 C -0.119 4.119 6 C 0.229 3.771 7 N -0.452 5.452 8 C -0.336 4.336 9 H 0.077 0.923 10 C 0.051 3.949 11 N -0.841 5.841 12 Si 0.904 3.096 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.270 1.270 16 C 0.085 3.915 17 C 0.013 3.987 18 O -0.386 6.386 19 C 0.031 3.969 20 C -0.204 4.204 21 C -0.159 4.159 22 H 0.044 0.956 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.127 0.873 27 H 0.270 0.730 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 -1.570 -3.201 6.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.247 6.247 3 C -0.027 4.027 4 C -0.128 4.128 5 C -0.142 4.142 6 C 0.121 3.879 7 N -0.147 5.147 8 C -0.464 4.464 9 H 0.095 0.905 10 C -0.158 4.158 11 N -0.473 5.473 12 Si 0.729 3.271 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.195 1.195 16 C -0.022 4.022 17 C -0.066 4.066 18 O -0.304 6.304 19 C -0.047 4.047 20 C -0.227 4.227 21 C -0.178 4.178 22 H 0.063 0.937 23 H 0.103 0.897 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.145 0.855 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.815 -1.405 -3.061 5.876 hybrid contribution 0.638 -0.120 0.322 0.725 sum -4.177 -1.524 -2.739 5.222 Atomic orbital electron populations 1.22762 0.80565 1.02147 1.00480 1.85938 1.19531 1.28193 1.90996 1.18517 0.92026 0.83164 1.09028 1.20044 0.90829 0.97547 1.04424 1.20475 0.99927 0.89522 1.04301 1.17804 0.90137 0.86816 0.93152 1.41875 1.04345 0.98927 1.69592 1.18846 0.80540 1.33681 1.13306 0.90536 1.25546 0.99126 0.97021 0.94140 1.70024 1.36476 1.36045 1.04804 0.86381 0.83500 0.79011 0.78161 1.19814 1.20806 1.19476 1.23717 0.96759 0.86986 0.94704 1.24288 1.01702 0.83860 0.96708 1.89716 1.87765 1.29248 1.23640 1.24138 1.01697 0.88681 0.90160 1.20236 0.93079 0.96383 1.13020 1.20583 0.97930 0.92190 1.07105 0.93727 0.89712 0.93682 0.87297 0.85484 0.91940 0.88051 0.90883 0.90154 0.88460 0.90875 0.87578 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 9.81 101.05 0.99 1.49 16 2 O -0.33 -6.20 10.50 -19.54 -0.21 -6.41 16 3 C 0.02 0.37 6.69 -39.17 -0.26 0.11 16 4 C -0.11 -2.38 9.98 -39.46 -0.39 -2.77 16 5 C -0.12 -2.82 7.98 -39.36 -0.31 -3.13 16 6 C 0.23 5.37 5.90 -83.79 -0.49 4.88 16 7 N -0.45 -10.48 2.82 -106.97 -0.30 -10.78 16 8 C -0.34 -8.13 6.72 -15.13 -0.10 -8.23 16 9 H 0.08 1.82 7.42 -52.49 -0.39 1.43 16 10 C 0.05 1.25 3.23 -17.45 -0.06 1.19 16 11 N -0.84 -22.01 12.11 55.49 0.67 -21.34 16 12 Si 0.90 19.22 29.44 -169.99 -5.00 14.22 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 C 0.09 1.72 4.60 -67.51 -0.31 1.41 16 17 C 0.01 0.24 8.41 24.61 0.21 0.45 16 18 O -0.39 -7.51 12.74 -35.23 -0.45 -7.96 16 19 C 0.03 0.60 8.15 24.66 0.20 0.80 16 20 C -0.20 -4.32 9.32 -39.35 -0.37 -4.69 16 21 C -0.16 -3.14 9.03 -39.46 -0.36 -3.50 16 22 H 0.04 0.56 7.66 -51.93 -0.40 0.16 16 23 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.59 7.66 -51.93 -0.40 0.19 16 25 H 0.11 2.19 8.06 -52.48 -0.42 1.76 16 26 H 0.13 3.14 5.54 -52.49 -0.29 2.85 16 27 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 28 H 0.10 1.94 5.85 -51.93 -0.30 1.63 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 31 H 0.10 2.03 6.83 -51.93 -0.35 1.68 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.11 2.05 5.89 -52.49 -0.31 1.74 16 34 H 0.11 1.79 6.29 -52.48 -0.33 1.46 16 LS Contribution 280.15 15.07 4.22 4.22 Total: -1.00 -27.34 280.15 -6.31 -33.65 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.99 Total: 6.39 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.26 Total: -12.00 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.37 Total: -32.12 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.65 Total: -14.37 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.00 Total: 14.22 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.34 -6.31 -33.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261118708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.576 kcal (2) G-P(sol) polarization free energy of solvation -27.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds