Wall clock time and date at job start Mon Mar 30 2020 21:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46823 * 2 1 4 4 C 1.50699 * 109.46952 * 240.00987 * 2 1 3 5 5 H 1.08005 * 119.99713 * 240.00103 * 4 2 1 6 6 C 1.37875 * 120.00401 * 59.98967 * 4 2 1 7 7 N 1.31512 * 120.00077 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99839 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47092 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46811 * 120.00304 * 8 6 4 11 11 H 1.48496 * 109.47082 * 240.00400 * 8 6 4 12 12 N 1.46496 * 109.47429 * 120.00676 * 2 1 3 13 13 C 1.46505 * 119.99619 * 239.99958 * 12 2 1 14 14 C 1.50703 * 109.47064 * 90.00051 * 13 12 2 15 15 C 1.38672 * 120.41759 * 269.71919 * 14 13 12 16 16 C 1.38625 * 118.42259 * 179.78105 * 15 14 13 17 17 C 1.38230 * 119.15910 * 0.51866 * 16 15 14 18 18 N 1.31855 * 120.75879 * 359.71947 * 17 16 15 19 19 C 1.31881 * 121.73257 * 0.02562 * 18 17 16 20 20 C 1.34774 * 120.00119 * 59.99783 * 12 2 1 21 21 N 1.34774 * 119.99687 * 180.02562 * 20 12 2 22 22 O 1.21579 * 120.00278 * 0.02562 * 20 12 2 23 23 H 1.08998 * 109.47827 * 59.99995 * 1 2 3 24 24 H 1.09003 * 109.46823 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46958 * 299.98893 * 1 2 3 26 26 H 0.96999 * 119.99725 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47068 * 210.00020 * 13 12 2 28 28 H 1.09001 * 109.47372 * 330.00108 * 13 12 2 29 29 H 1.08010 * 120.79118 * 0.02562 * 15 14 13 30 30 H 1.07996 * 120.42434 * 180.21686 * 16 15 14 31 31 H 1.08001 * 119.61901 * 179.74727 * 17 16 15 32 32 H 1.08001 * 119.61815 * 180.02562 * 19 18 17 33 33 H 0.97010 * 120.00335 * 359.97438 * 21 20 12 34 34 H 0.97002 * 120.00010 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9432 0.8303 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 3.1474 -2.2859 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1470 -0.1853 -4.8162 12 7 2.0184 -0.6907 1.1960 13 6 2.8607 0.0213 2.1604 14 6 1.9894 0.6754 3.2016 15 6 1.5248 1.9688 3.0164 16 6 0.7224 2.5286 3.9985 17 6 0.4232 1.7882 5.1267 18 7 0.8868 0.5624 5.2714 19 6 1.6485 -0.0037 4.3556 20 6 1.6928 -1.9810 1.4092 21 7 2.1418 -2.6163 2.5098 22 8 0.9942 -2.5720 0.6087 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 0.7085 1.1615 -3.4843 27 1 3.5364 -0.6847 2.6434 28 1 3.4419 0.7838 1.6418 29 1 1.7788 2.5254 2.1263 30 1 0.3400 3.5323 3.8858 31 1 -0.1979 2.2186 5.8984 32 1 2.0093 -1.0101 4.5091 33 1 2.6995 -2.1449 3.1484 34 1 1.9078 -3.5451 2.6631 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259783014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:31 Heat of formation + Delta-G solvation = 15.205928 kcal Electronic energy + Delta-G solvation = -18557.428977 eV Core-core repulsion = 15683.838003 eV Total energy + Delta-G solvation = -2873.590974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25382 -39.01105 -35.31479 -33.90505 -32.57421 -31.93227 -31.26664 -28.81655 -25.86707 -25.05391 -23.50751 -22.27253 -21.59955 -19.03672 -17.71440 -17.01907 -16.51772 -16.01784 -15.81713 -15.23644 -14.70314 -14.17653 -13.77489 -13.56688 -13.14193 -13.10960 -12.92089 -12.43951 -12.18362 -11.54857 -11.37129 -10.98744 -10.77564 -10.56264 -10.28469 -10.03766 -9.66201 -9.39743 -9.33376 -9.01054 -8.92145 -8.77662 -8.30512 -7.59272 -5.96582 -3.98761 1.17244 1.40245 3.34643 3.42652 3.48360 3.67207 3.97221 4.11032 4.44321 4.52380 4.79250 4.93939 4.97645 5.10081 5.15526 5.35770 5.43655 5.70935 5.74702 5.90533 6.22515 6.39747 6.65406 6.78296 6.97461 7.12431 7.21986 7.44487 7.60515 7.82723 7.95281 8.02613 8.16209 8.34148 8.81841 9.01221 9.50448 9.68351 11.09265 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029574 B = 0.007090 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.552470 B = 3948.086811 C = 4497.673408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.289 3.711 3 H 0.041 0.959 4 C -0.497 4.497 5 H 0.059 0.941 6 C 0.059 3.941 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.608 5.608 13 C 0.153 3.847 14 C -0.147 4.147 15 C -0.054 4.054 16 C -0.172 4.172 17 C 0.089 3.911 18 N -0.488 5.488 19 C 0.105 3.895 20 C 0.703 3.297 21 N -0.885 5.885 22 O -0.568 6.568 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.000 1.000 26 H 0.259 0.741 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.384 0.616 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 2.756 13.712 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.189 3.811 3 H 0.059 0.941 4 C -0.536 4.536 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.345 5.345 13 C 0.027 3.973 14 C -0.151 4.151 15 C -0.080 4.080 16 C -0.192 4.192 17 C -0.068 4.068 18 N -0.197 5.197 19 C -0.053 4.053 20 C 0.403 3.597 21 N -0.456 5.456 22 O -0.443 6.443 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.019 0.981 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.213 0.787 34 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.783 2.164 13.616 14.065 hybrid contribution 0.593 -0.020 -1.192 1.331 sum 3.376 2.143 12.425 13.052 Atomic orbital electron populations 1.22152 0.98156 1.01356 0.99538 1.18714 0.91326 0.91375 0.79723 0.94104 1.21353 1.30347 1.11919 0.89973 0.92295 1.24839 0.95295 0.95137 0.98866 1.69878 1.37386 1.23255 1.23336 0.86429 0.78537 0.79549 0.82806 1.19922 1.21069 1.21264 1.47753 1.53140 1.09357 1.24229 1.20255 0.91205 0.96781 0.89030 1.21544 1.01009 0.95519 0.97001 1.21589 0.93889 0.94433 0.98135 1.22140 0.99915 1.01689 0.95442 1.22688 0.97198 0.90270 0.96621 1.67628 1.09656 1.11557 1.30813 1.22551 0.94154 0.99031 0.89567 1.15946 0.80474 0.81897 0.81396 1.43443 1.59457 1.16518 1.26226 1.90932 1.41736 1.65694 1.45975 0.89342 0.92863 0.98106 0.93068 0.90828 0.89059 0.84462 0.84901 0.83129 0.83564 0.78723 0.76574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 8.90 37.16 0.33 -3.62 16 2 C 0.29 7.14 2.66 -69.08 -0.18 6.96 16 3 H 0.04 1.03 7.79 -51.93 -0.40 0.62 16 4 C -0.50 -13.93 7.58 -34.44 -0.26 -14.19 16 5 H 0.06 1.73 7.47 -52.48 -0.39 1.34 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.61 -12.39 2.40 -174.50 -0.42 -12.81 16 13 C 0.15 2.29 5.36 -5.19 -0.03 2.27 16 14 C -0.15 -2.10 5.48 -104.48 -0.57 -2.67 16 15 C -0.05 -0.75 9.86 -39.28 -0.39 -1.13 16 16 C -0.17 -2.09 10.11 -39.44 -0.40 -2.49 16 17 C 0.09 1.11 11.18 -17.54 -0.20 0.92 16 18 N -0.49 -6.99 10.36 -13.25 -0.14 -7.13 16 19 C 0.10 1.44 10.72 -17.55 -0.19 1.25 16 20 C 0.70 14.81 7.83 -86.92 -0.68 14.13 16 21 N -0.88 -13.10 8.65 27.63 0.24 -12.86 16 22 O -0.57 -14.88 14.30 5.30 0.08 -14.80 16 23 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 24 H 0.05 1.48 6.17 -51.93 -0.32 1.16 16 25 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.07 0.88 6.32 -51.93 -0.33 0.55 16 28 H 0.09 1.32 7.87 -51.93 -0.41 0.91 16 29 H 0.14 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.15 1.70 6.26 -52.49 -0.33 1.37 16 33 H 0.38 4.43 4.69 -40.82 -0.19 4.24 16 34 H 0.40 5.29 8.93 -40.82 -0.36 4.92 16 LS Contribution 285.08 15.07 4.30 4.30 Total: -1.00 -34.01 285.08 -6.88 -40.88 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.88 Total: 7.23 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.66 Total: 2.97 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.31 Total: -57.76 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.01 -6.88 -40.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.091 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds