Wall clock time and date at job start Mon Mar 30 2020 21:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34261 * 125.75469 * 2 1 4 4 C 1.38042 * 107.41833 * 179.97438 * 3 2 1 5 5 C 1.47434 * 126.41247 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00092 * 5.71514 * 5 4 3 7 7 N 1.34774 * 119.99679 * 185.72101 * 5 4 3 8 8 C 1.47428 * 125.64816 * 175.35034 * 7 5 4 9 9 C 1.54907 * 104.83290 * 203.85779 * 8 7 5 10 10 C 1.55158 * 101.58276 * 322.99158 * 9 8 7 11 11 H 1.08999 * 110.71757 * 276.95968 * 10 9 8 12 12 C 1.50703 * 110.71851 * 153.86601 * 10 9 8 13 13 H 1.07995 * 120.00013 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99844 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00098 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00025 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47156 * 59.99829 * 16 14 12 18 18 H 1.48501 * 109.47478 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47284 * 299.99947 * 16 14 12 20 20 C 1.47023 * 125.65115 * 355.03764 * 7 5 4 21 21 C 1.41286 * 107.16993 * 0.24150 * 4 3 2 22 22 N 1.30443 * 108.02538 * 359.59229 * 21 4 3 23 23 H 1.09008 * 109.47176 * 90.00305 * 1 2 3 24 24 H 1.08998 * 109.47342 * 209.99455 * 1 2 3 25 25 H 1.08993 * 109.47452 * 329.99927 * 1 2 3 26 26 H 1.08002 * 126.28937 * 0.02624 * 3 2 1 27 27 H 1.08996 * 110.36366 * 322.70017 * 8 7 5 28 28 H 1.09002 * 110.36406 * 84.91159 * 8 7 5 29 29 H 1.09005 * 111.00074 * 81.06499 * 9 8 7 30 30 H 1.08995 * 111.00600 * 204.91516 * 9 8 7 31 31 H 0.96997 * 119.99893 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.87985 * 298.62879 * 20 7 5 33 33 H 1.08999 * 109.88353 * 59.78877 * 20 7 5 34 34 H 1.08005 * 125.98726 * 179.73116 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0006 5 6 4.7638 1.5062 0.0003 6 8 4.6555 2.7129 0.1043 7 7 5.9844 0.9466 -0.1154 8 6 7.2586 1.6797 -0.2269 9 6 8.2235 0.6929 -0.9305 10 6 7.7919 -0.6615 -0.3087 11 1 8.2722 -0.8126 0.6580 12 6 8.1073 -1.8015 -1.2426 13 1 8.5722 -1.6046 -2.1973 14 6 7.8014 -3.0957 -0.8786 15 7 7.2348 -3.3354 0.2839 16 14 8.1917 -4.5086 -2.0364 17 1 9.6531 -4.5453 -2.2976 18 1 7.7682 -5.7892 -1.4151 19 1 7.4647 -4.3148 -3.3167 20 6 6.2663 -0.4960 -0.1448 21 6 3.5310 -0.7573 -0.0047 22 7 2.2827 -1.1356 0.0006 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.9165 2.1170 0.0004 27 1 7.1279 2.5778 -0.8305 28 1 7.6344 1.9398 0.7626 29 1 8.0667 0.6953 -2.0092 30 1 9.2613 0.9212 -0.6876 31 1 7.0200 -4.2459 0.5401 32 1 5.9417 -0.9563 0.7884 33 1 5.7508 -0.9574 -0.9871 34 1 4.3918 -1.4095 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259800419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:42 Heat of formation + Delta-G solvation = 47.413818 kcal Electronic energy + Delta-G solvation = -18160.170600 eV Core-core repulsion = 15287.976265 eV Total energy + Delta-G solvation = -2872.194335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07649 -38.87282 -36.55648 -33.35656 -32.87171 -30.77124 -29.85124 -28.37390 -26.64869 -25.02733 -23.22864 -21.02656 -20.98466 -19.63120 -18.91563 -16.87085 -16.52787 -15.72428 -15.53388 -15.21372 -14.74521 -14.43290 -13.91915 -13.41549 -12.91793 -12.79306 -12.59340 -12.42869 -12.29429 -11.86777 -11.60122 -11.38018 -10.94734 -10.75043 -10.59963 -10.50405 -9.86185 -9.40406 -9.34579 -9.25820 -9.06559 -8.53884 -8.45037 -7.76334 -6.14881 -4.18716 1.78565 2.54007 2.58054 3.27963 3.33865 3.35916 3.77116 3.97479 4.36487 4.58472 4.92585 5.01976 5.17776 5.23738 5.29599 5.43608 5.70938 5.75137 5.90916 5.94041 6.07682 6.24429 6.46459 6.70698 6.78023 6.84058 6.88830 6.98477 7.06870 7.29808 7.64925 7.81449 7.85111 8.23652 8.36298 8.80822 8.89036 9.47373 10.95070 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.007417 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.497700 B = 3774.401869 C = 4930.930386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.374 5.374 3 C 0.115 3.885 4 C -0.281 4.281 5 C 0.602 3.398 6 O -0.577 6.577 7 N -0.609 5.609 8 C 0.110 3.890 9 C -0.130 4.130 10 C 0.044 3.956 11 H 0.045 0.955 12 C -0.516 4.516 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.108 3.892 21 C 0.081 3.919 22 N -0.305 5.305 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.184 0.816 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.570 5.826 -0.185 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.153 5.153 3 C -0.036 4.036 4 C -0.296 4.296 5 C 0.392 3.608 6 O -0.459 6.459 7 N -0.341 5.341 8 C -0.013 4.013 9 C -0.168 4.168 10 C 0.025 3.975 11 H 0.063 0.937 12 C -0.554 4.554 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.013 4.013 21 C -0.106 4.106 22 N -0.125 5.125 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.201 0.799 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.737 5.296 0.000 11.972 hybrid contribution 0.594 -0.268 -0.553 0.854 sum -10.143 5.028 -0.553 11.334 Atomic orbital electron populations 1.21881 0.74176 1.04557 1.03476 1.48452 1.06956 1.04213 1.55668 1.22833 0.90218 0.93412 0.97153 1.20299 0.93272 0.93834 1.22179 1.16876 0.81559 0.86186 0.76144 1.90681 1.86830 1.14676 1.53737 1.48594 1.05014 1.09897 1.70571 1.22179 0.83830 0.95432 0.99820 1.22891 0.97285 0.96716 0.99876 1.19734 0.89426 0.91135 0.97194 0.93729 1.21012 1.40728 0.90526 1.03165 0.92118 1.25009 0.94746 0.98876 0.95131 1.69914 1.41575 1.21021 1.20181 0.86637 0.78865 0.81396 0.81047 1.20192 1.21234 1.20185 1.22824 1.01045 0.76856 1.00617 1.25253 0.95624 0.94749 0.95006 1.77252 1.02266 1.07253 1.25708 0.90610 0.89105 0.89442 0.79896 0.91871 0.92413 0.91612 0.91457 0.92566 0.91723 0.91618 0.77085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.44 59.84 0.68 1.53 16 2 N -0.37 -5.33 3.98 -67.60 -0.27 -5.60 16 3 C 0.11 1.73 11.30 -16.56 -0.19 1.55 16 4 C -0.28 -5.23 6.09 -105.07 -0.64 -5.87 16 5 C 0.60 12.50 7.84 -12.52 -0.10 12.40 16 6 O -0.58 -12.88 17.20 5.28 0.09 -12.79 16 7 N -0.61 -12.62 3.33 -171.78 -0.57 -13.20 16 8 C 0.11 2.08 6.89 -2.53 -0.02 2.06 16 9 C -0.13 -2.52 6.50 -24.58 -0.16 -2.68 16 10 C 0.04 1.02 2.79 -89.94 -0.25 0.77 16 11 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 12 C -0.52 -13.09 8.36 -34.44 -0.29 -13.38 16 13 H 0.06 1.53 7.76 -52.49 -0.41 1.12 16 14 C 0.07 1.68 5.36 -17.82 -0.10 1.58 16 15 N -0.89 -23.64 12.77 55.43 0.71 -22.93 16 16 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C 0.11 2.37 3.89 -3.07 -0.01 2.36 16 21 C 0.08 1.53 10.45 -16.98 -0.18 1.35 16 22 N -0.31 -5.45 12.50 30.86 0.39 -5.07 16 23 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.28 8.02 -51.93 -0.42 0.87 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.06 1.48 7.12 -51.93 -0.37 1.11 16 33 H 0.07 1.51 6.39 -51.93 -0.33 1.18 16 34 H 0.21 4.26 4.51 -52.48 -0.24 4.02 16 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -30.50 288.64 -5.84 -36.35 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.28 Total: 2.00 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.24 Total: 1.68 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.25 Total: -46.79 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.50 -5.84 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.762 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds