Wall clock time and date at job start Mon Mar 30 2020 21:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34261 * 125.75469 * 2 1 4 4 C 1.38042 * 107.41833 * 179.97438 * 3 2 1 5 5 C 1.47434 * 126.41247 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00092 * 5.71514 * 5 4 3 7 7 N 1.34774 * 119.99679 * 185.72101 * 5 4 3 8 8 C 1.47428 * 125.64816 * 175.35034 * 7 5 4 9 9 C 1.54907 * 104.83290 * 203.85779 * 8 7 5 10 10 C 1.55158 * 101.58276 * 322.99158 * 9 8 7 11 11 H 1.08999 * 110.71757 * 276.95968 * 10 9 8 12 12 C 1.50703 * 110.71851 * 153.86601 * 10 9 8 13 13 H 1.07995 * 120.00013 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99844 * 180.02562 * 12 10 9 15 15 N 1.31520 * 120.00098 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00025 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47156 * 59.99829 * 16 14 12 18 18 H 1.48501 * 109.47478 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47284 * 299.99947 * 16 14 12 20 20 C 1.47023 * 125.65115 * 355.03764 * 7 5 4 21 21 C 1.41286 * 107.16993 * 0.24150 * 4 3 2 22 22 N 1.30443 * 108.02538 * 359.59229 * 21 4 3 23 23 H 1.09008 * 109.47176 * 90.00305 * 1 2 3 24 24 H 1.08998 * 109.47342 * 209.99455 * 1 2 3 25 25 H 1.08993 * 109.47452 * 329.99927 * 1 2 3 26 26 H 1.08002 * 126.28937 * 0.02624 * 3 2 1 27 27 H 1.08996 * 110.36366 * 322.70017 * 8 7 5 28 28 H 1.09002 * 110.36406 * 84.91159 * 8 7 5 29 29 H 1.09005 * 111.00074 * 81.06499 * 9 8 7 30 30 H 1.08995 * 111.00600 * 204.91516 * 9 8 7 31 31 H 0.96997 * 119.99893 * 180.02562 * 15 14 12 32 32 H 1.09001 * 109.87985 * 298.62879 * 20 7 5 33 33 H 1.08999 * 109.88353 * 59.78877 * 20 7 5 34 34 H 1.08005 * 125.98726 * 179.73116 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0006 5 6 4.7638 1.5062 0.0003 6 8 4.6555 2.7129 0.1043 7 7 5.9844 0.9466 -0.1154 8 6 7.2586 1.6797 -0.2269 9 6 8.2235 0.6929 -0.9305 10 6 7.7919 -0.6615 -0.3087 11 1 8.2722 -0.8126 0.6580 12 6 8.1073 -1.8015 -1.2426 13 1 8.5722 -1.6046 -2.1973 14 6 7.8014 -3.0957 -0.8786 15 7 7.2348 -3.3354 0.2839 16 14 8.1917 -4.5086 -2.0364 17 1 9.6531 -4.5453 -2.2976 18 1 7.7682 -5.7892 -1.4151 19 1 7.4647 -4.3148 -3.3167 20 6 6.2663 -0.4960 -0.1448 21 6 3.5310 -0.7573 -0.0047 22 7 2.2827 -1.1356 0.0006 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5138 26 1 1.9165 2.1170 0.0004 27 1 7.1279 2.5778 -0.8305 28 1 7.6344 1.9398 0.7626 29 1 8.0667 0.6953 -2.0092 30 1 9.2613 0.9212 -0.6876 31 1 7.0200 -4.2459 0.5401 32 1 5.9417 -0.9563 0.7884 33 1 5.7508 -0.9574 -0.9871 34 1 4.3918 -1.4095 -0.0098 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259800419.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:41 Heat of formation + Delta-G solvation = 27.710254 kcal Electronic energy + Delta-G solvation = -18161.025011 eV Core-core repulsion = 15287.976265 eV Total energy + Delta-G solvation = -2873.048746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38307 -40.46987 -38.24357 -34.84705 -34.43017 -32.40054 -31.23983 -29.99594 -27.74648 -26.90568 -24.79627 -22.48832 -22.32335 -21.29197 -20.39226 -18.45939 -18.22247 -17.24789 -16.94910 -16.51019 -16.40903 -16.07713 -15.23578 -14.95601 -14.39190 -14.22373 -13.91171 -13.76310 -13.50654 -13.35736 -13.34430 -13.06141 -12.73609 -12.38050 -12.28828 -12.08712 -11.56826 -11.13023 -11.03433 -10.85391 -10.57155 -10.50818 -9.81328 -9.39380 -8.12929 -6.22201 0.53167 1.11204 1.47325 1.48628 1.49728 1.55362 2.22194 2.43047 2.48056 3.19653 3.50978 3.83123 3.91329 4.16451 4.24199 4.26452 4.38667 4.43614 4.58530 4.65006 4.68209 4.69944 4.70404 5.03607 5.12942 5.24509 5.32756 5.42655 5.56589 5.72534 5.90518 5.91971 6.31845 6.49719 6.69752 6.85885 7.25493 7.46464 8.96177 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.007417 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.497700 B = 3774.401869 C = 4930.930386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.360 5.360 3 C 0.140 3.860 4 C -0.318 4.318 5 C 0.601 3.399 6 O -0.595 6.595 7 N -0.616 5.616 8 C 0.109 3.891 9 C -0.117 4.117 10 C 0.034 3.966 11 H 0.021 0.979 12 C -0.529 4.529 13 H 0.061 0.939 14 C 0.022 3.978 15 N -0.914 5.914 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.133 3.867 21 C 0.068 3.932 22 N -0.327 5.327 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.222 0.778 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.957 6.773 -0.826 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.138 5.138 3 C -0.013 4.013 4 C -0.333 4.333 5 C 0.392 3.608 6 O -0.479 6.479 7 N -0.347 5.347 8 C -0.012 4.012 9 C -0.155 4.155 10 C 0.015 3.985 11 H 0.039 0.961 12 C -0.567 4.567 13 H 0.079 0.921 14 C -0.178 4.178 15 N -0.552 5.552 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.011 3.989 21 C -0.118 4.118 22 N -0.148 5.148 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.143 0.857 26 H 0.238 0.762 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.135 6.233 -0.648 13.658 hybrid contribution 0.898 -0.534 -0.335 1.097 sum -11.237 5.700 -0.983 12.638 Atomic orbital electron populations 1.22445 0.70489 1.06799 1.05517 1.48903 1.08789 1.02962 1.53146 1.23316 0.88880 0.94913 0.94229 1.20311 0.94122 0.93407 1.25486 1.17180 0.81965 0.86213 0.75415 1.90651 1.87106 1.15301 1.54872 1.48656 1.05910 1.09325 1.70847 1.22273 0.83000 0.95453 1.00522 1.22797 0.98644 0.94484 0.99566 1.19700 0.90072 0.92713 0.95998 0.96079 1.21313 1.40488 0.91452 1.03452 0.92099 1.25677 0.94743 1.01063 0.96356 1.70025 1.42441 1.21236 1.21527 0.85742 0.78799 0.78652 0.79267 1.19566 1.21295 1.19914 1.22347 0.99946 0.77624 0.98986 1.24889 0.95698 0.94934 0.96259 1.77163 1.02152 1.09212 1.26296 0.88603 0.88514 0.85665 0.76188 0.90654 0.91493 0.91634 0.89353 0.92764 0.93548 0.93132 0.79387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.44 127.77 1.46 2.58 16 2 N -0.36 -9.38 3.98 -367.79 -1.46 -10.84 16 3 C 0.14 3.87 11.30 84.28 0.95 4.83 16 4 C -0.32 -11.74 6.09 -20.15 -0.12 -11.86 16 5 C 0.60 24.81 7.84 86.67 0.68 25.49 16 6 O -0.60 -25.98 17.20 -4.03 -0.07 -26.05 16 7 N -0.62 -25.76 3.33 -815.66 -2.71 -28.47 16 8 C 0.11 4.07 6.89 86.85 0.60 4.67 16 9 C -0.12 -4.48 6.50 31.99 0.21 -4.27 16 10 C 0.03 1.62 2.79 -10.35 -0.03 1.59 16 11 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 12 C -0.53 -27.18 8.36 25.60 0.21 -26.96 16 13 H 0.06 3.06 7.76 -2.91 -0.02 3.04 16 14 C 0.02 1.14 5.36 84.65 0.45 1.59 16 15 N -0.91 -49.89 12.77 21.45 0.27 -49.61 16 16 Si 0.95 41.74 29.54 68.60 2.03 43.77 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.13 6.06 3.89 86.73 0.34 6.40 16 21 C 0.07 2.66 10.45 85.65 0.89 3.56 16 22 N -0.33 -11.57 12.50 -56.28 -0.70 -12.28 16 23 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.22 4.33 8.06 -2.91 -0.02 4.30 16 27 H 0.08 2.63 8.09 -2.39 -0.02 2.61 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.06 2.51 8.02 -2.38 -0.02 2.49 16 30 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.05 2.25 7.12 -2.39 -0.02 2.24 16 33 H 0.05 2.43 6.39 -2.39 -0.02 2.42 16 34 H 0.19 8.10 4.51 -2.91 -0.01 8.09 16 Total: -1.00 -66.31 288.64 4.10 -62.21 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.10 Total: 13.65 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 5.65 Total: 7.62 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -4.61 Total: -101.20 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.07 Total: -26.05 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -66.31 4.10 -62.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800419.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.923 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds