Wall clock time and date at job start Mon Mar 30 2020 21:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.47291 * 125.83750 * 2 1 4 4 C 1.54214 * 103.05456 * 180.02562 * 3 2 1 5 5 N 1.46981 * 103.83676 * 359.78052 * 4 3 2 6 6 C 1.28242 * 110.18418 * 0.38909 * 5 4 3 7 7 C 1.50704 * 122.70372 * 179.83602 * 6 5 4 8 8 H 1.08995 * 109.46557 * 144.71200 * 7 6 5 9 9 C 1.50700 * 109.47081 * 264.71287 * 7 6 5 10 10 H 1.08004 * 119.99514 * 234.54716 * 9 7 6 11 11 C 1.37872 * 119.99839 * 54.55219 * 9 7 6 12 12 N 1.31510 * 120.00236 * 3.87144 * 11 9 7 13 13 Si 1.86805 * 119.99716 * 183.87139 * 11 9 7 14 14 H 1.48499 * 109.47156 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47232 * 300.00036 * 13 11 9 16 16 H 1.48502 * 109.47249 * 59.99957 * 13 11 9 17 17 C 1.52997 * 109.46879 * 24.71545 * 7 6 5 18 18 C 1.50696 * 109.47150 * 172.35118 * 17 7 6 19 19 C 1.34330 * 126.44576 * 89.70611 * 18 17 7 20 20 N 1.34478 * 107.66999 * 179.88002 * 19 18 17 21 21 C 1.30255 * 108.70283 * 0.39353 * 20 19 18 22 22 O 1.33970 * 108.75660 * 359.75944 * 21 20 19 23 23 H 1.09002 * 109.47089 * 269.96258 * 1 2 3 24 24 H 1.09006 * 109.46561 * 29.95844 * 1 2 3 25 25 H 1.08997 * 109.47408 * 149.95646 * 1 2 3 26 26 H 1.08997 * 110.69500 * 298.42709 * 3 2 1 27 27 H 1.09001 * 110.69652 * 61.64149 * 3 2 1 28 28 H 1.09002 * 110.55727 * 118.58831 * 4 3 2 29 29 H 1.09000 * 110.55715 * 241.41017 * 4 3 2 30 30 H 0.97001 * 120.00284 * 4.84002 * 12 11 9 31 31 H 1.09003 * 109.47190 * 292.34848 * 17 7 6 32 32 H 1.09001 * 109.47285 * 52.34800 * 17 7 6 33 33 H 1.07997 * 126.16484 * 0.02562 * 19 18 17 34 34 H 1.07997 * 125.62247 * 179.73082 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3274 1.1941 0.0000 4 6 3.7492 0.5969 -0.0007 5 7 3.5207 -0.8550 0.0045 6 6 2.2628 -1.1050 -0.0005 7 6 1.7114 -2.5075 -0.0008 8 1 0.7953 -2.5377 0.5890 9 6 1.4118 -2.9292 -1.4162 10 1 0.4256 -3.2845 -1.6765 11 6 2.3966 -2.8617 -2.3787 12 7 3.6172 -2.5020 -2.0465 13 14 1.9972 -3.2810 -4.1547 14 1 3.2188 -3.1309 -4.9856 15 1 1.5122 -4.6823 -4.2354 16 1 0.9429 -2.3627 -4.6551 17 6 2.7416 -3.4606 0.6082 18 6 2.1239 -4.8242 0.7812 19 6 2.1228 -5.8200 -0.1203 20 7 1.4725 -6.8634 0.4246 21 6 1.0742 -6.5296 1.6190 22 8 1.4634 -5.2719 1.8671 23 1 -0.3633 -0.0007 1.0277 24 1 -0.3633 0.8904 -0.5132 25 1 -0.3634 -0.8895 -0.5145 26 1 2.1594 1.7905 -0.8967 27 1 2.1603 1.7899 0.8973 28 1 4.2909 0.8992 -0.8970 29 1 4.2915 0.8987 0.8954 30 1 3.8422 -2.3523 -1.1149 31 1 3.6046 -3.5341 -0.0537 32 1 3.0596 -3.0800 1.5789 33 1 2.5664 -5.7892 -1.1045 34 1 0.5211 -7.1622 2.2973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259898427.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:09:55 Heat of formation + Delta-G solvation = 72.886637 kcal Electronic energy + Delta-G solvation = -18781.666564 eV Core-core repulsion = 15910.576814 eV Total energy + Delta-G solvation = -2871.089751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.56054 -39.40777 -35.20965 -33.96452 -32.38028 -31.18423 -29.61074 -27.37936 -25.79291 -25.20380 -22.40102 -21.85847 -21.53249 -20.27557 -18.28452 -16.94298 -16.75015 -15.92480 -15.56881 -15.28593 -14.27680 -14.01028 -13.73817 -13.21192 -13.03380 -12.86243 -12.41594 -12.06977 -11.81717 -11.56219 -11.52769 -11.32457 -10.91244 -10.69728 -10.63396 -10.16453 -10.14266 -10.05969 -9.81425 -8.86575 -8.55652 -8.37160 -7.92839 -7.04571 -6.09506 -4.13332 2.23920 3.43647 3.43683 3.45923 3.51116 3.62501 3.68592 3.90859 4.53826 4.86754 5.20839 5.31155 5.50825 5.55908 5.67787 5.77912 5.87576 5.95668 6.02665 6.13505 6.15848 6.25306 6.35405 6.48413 6.49620 6.66567 6.85470 6.98241 7.12648 7.26369 7.28354 7.98383 8.24931 8.41792 8.49972 8.94441 9.13495 9.62539 11.18532 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.010060 C = 0.007711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.184486 B = 2782.747761 C = 3630.339189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.647 5.647 3 C 0.081 3.919 4 C 0.027 3.973 5 N -0.577 5.577 6 C 0.400 3.600 7 C 0.091 3.909 8 H 0.045 0.955 9 C -0.607 4.607 10 H 0.054 0.946 11 C 0.034 3.966 12 N -0.889 5.889 13 Si 1.051 2.949 14 H -0.283 1.283 15 H -0.285 1.285 16 H -0.292 1.292 17 C -0.029 4.029 18 C 0.005 3.995 19 C -0.036 4.036 20 N -0.489 5.489 21 C 0.127 3.873 22 O -0.216 6.216 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.312 0.688 31 H 0.113 0.887 32 H 0.053 0.947 33 H 0.181 0.819 34 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 2.188 5.915 7.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.370 5.370 3 C -0.044 4.044 4 C -0.103 4.103 5 N -0.305 5.305 6 C 0.124 3.876 7 C 0.070 3.930 8 H 0.064 0.936 9 C -0.646 4.646 10 H 0.072 0.928 11 C -0.178 4.178 12 N -0.528 5.528 13 Si 0.880 3.120 14 H -0.209 1.209 15 H -0.212 1.212 16 H -0.218 1.218 17 C -0.067 4.067 18 C -0.048 4.048 19 C -0.174 4.174 20 N -0.218 5.218 21 C -0.099 4.099 22 O -0.103 6.103 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.198 0.802 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.027 1.282 4.207 5.339 hybrid contribution -1.391 1.465 1.570 2.558 sum -4.418 2.747 5.776 7.773 Atomic orbital electron populations 1.21277 0.78888 1.02684 0.99855 1.47806 1.05136 1.04451 1.79647 1.22471 0.92818 0.89066 1.00014 1.22937 0.94324 0.91954 1.01068 1.74089 1.13624 1.10566 1.32266 1.23818 0.86983 0.91092 0.85661 1.17722 0.92996 0.83754 0.98490 0.93634 1.21419 1.00159 1.50176 0.92805 0.92785 1.25536 0.93428 0.94334 1.04459 1.70653 1.18951 1.36947 1.26272 0.83832 0.75600 0.76544 0.76066 1.20851 1.21182 1.21834 1.20450 0.99713 0.86009 1.00578 1.23734 0.97652 0.98782 0.84640 1.22922 1.04186 0.88770 1.01541 1.70342 1.13326 1.30603 1.07556 1.27670 1.03268 0.83024 0.95940 1.84379 1.56375 1.29022 1.40512 0.94529 0.92743 0.90235 0.92422 0.92550 0.90962 0.91481 0.86553 0.86882 0.92863 0.80216 0.74648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.93 10.73 59.85 0.64 2.57 16 2 N -0.65 -12.94 3.44 -178.03 -0.61 -13.55 16 3 C 0.08 1.42 7.77 -2.97 -0.02 1.40 16 4 C 0.03 0.53 8.06 -3.14 -0.03 0.51 16 5 N -0.58 -13.61 8.19 -57.40 -0.47 -14.08 16 6 C 0.40 9.20 5.79 -156.10 -0.90 8.30 16 7 C 0.09 2.14 1.74 -92.92 -0.16 1.98 16 8 H 0.05 1.04 7.61 -51.93 -0.40 0.64 16 9 C -0.61 -15.55 7.71 -34.44 -0.27 -15.82 16 10 H 0.05 1.41 7.82 -52.48 -0.41 1.00 16 11 C 0.03 0.91 5.11 -17.82 -0.09 0.82 16 12 N -0.89 -25.04 12.49 55.43 0.69 -24.35 16 13 Si 1.05 24.34 29.91 -169.99 -5.08 19.26 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 C -0.03 -0.65 4.55 -27.89 -0.13 -0.77 16 18 C 0.00 0.10 6.29 -35.69 -0.22 -0.13 16 19 C -0.04 -0.79 11.38 -17.77 -0.20 -0.99 16 20 N -0.49 -9.73 11.29 -14.97 -0.17 -9.90 16 21 C 0.13 2.11 13.23 52.09 0.69 2.80 16 22 O -0.22 -4.16 10.78 5.36 0.06 -4.10 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.43 7.31 -51.93 -0.38 1.05 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.31 8.60 2.58 -40.82 -0.11 8.50 16 31 H 0.11 2.82 5.47 -51.93 -0.28 2.54 16 32 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.18 4.00 8.06 -52.49 -0.42 3.58 16 34 H 0.24 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 283.66 15.07 4.27 4.27 Total: -1.00 -30.81 283.66 -6.18 -36.99 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.17 Total: 4.80 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.69 Total: 0.67 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.56 Total: -61.88 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.06 Total: -4.10 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.81 -6.18 -36.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259898427.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.872 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds