Wall clock time and date at job start Mon Mar 30 2020 21:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46685 * 2 1 4 4 N 1.46501 * 109.47421 * 120.00068 * 2 1 3 5 5 C 1.36928 * 119.99573 * 304.81998 * 4 2 1 6 6 H 1.07994 * 120.00232 * 300.14811 * 5 4 2 7 7 C 1.38853 * 120.00375 * 120.15945 * 5 4 2 8 8 N 1.31530 * 120.00577 * 179.88744 * 7 5 4 9 9 Si 1.86803 * 119.99502 * 359.88566 * 7 5 4 10 10 H 1.48499 * 109.47408 * 95.36876 * 9 7 5 11 11 H 1.48509 * 109.47053 * 215.36758 * 9 7 5 12 12 H 1.48501 * 109.47345 * 335.36507 * 9 7 5 13 13 C 1.38518 * 120.00014 * 124.81415 * 4 2 1 14 14 N 1.33292 * 120.70858 * 353.36740 * 13 4 2 15 15 C 1.31724 * 120.71332 * 179.97438 * 14 13 4 16 16 N 1.31994 * 122.03049 * 0.25919 * 15 14 13 17 17 C 1.32125 * 120.73000 * 359.48173 * 16 15 14 18 18 C 1.38401 * 119.22612 * 0.50097 * 17 16 15 19 19 C 1.50753 * 107.48390 * 179.75256 * 18 17 16 20 20 O 1.44019 * 105.92747 * 17.50766 * 19 18 17 21 21 C 1.43995 * 104.93941 * 331.86030 * 20 19 18 22 22 H 1.09001 * 109.47622 * 295.31607 * 1 2 3 23 23 H 1.09004 * 109.47479 * 55.31713 * 1 2 3 24 24 H 1.09003 * 109.47359 * 175.31554 * 1 2 3 25 25 H 1.09005 * 109.46973 * 240.00535 * 2 1 3 26 26 H 1.09007 * 109.46856 * 184.74393 * 3 2 1 27 27 H 1.08991 * 109.47642 * 304.74097 * 3 2 1 28 28 H 1.08999 * 109.46944 * 64.74989 * 3 2 1 29 29 H 0.96996 * 119.99840 * 180.02562 * 8 7 5 30 30 H 1.07995 * 118.97860 * 179.97438 * 15 14 13 31 31 H 1.09003 * 110.15862 * 136.61900 * 19 18 17 32 32 H 1.08995 * 110.16326 * 258.31592 * 19 18 17 33 33 H 1.08999 * 110.15097 * 147.30243 * 21 20 19 34 34 H 1.08996 * 110.14685 * 269.04333 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6082 -0.2831 2.4373 6 1 1.8104 0.7246 2.7690 7 6 0.9325 -1.1654 3.2698 8 7 0.5405 -0.7747 4.4629 9 14 0.5803 -2.9076 2.6950 10 1 1.6422 -3.8178 3.1941 11 1 -0.7364 -3.3465 3.2232 12 1 0.5550 -2.9436 1.2106 13 6 2.8950 -1.7559 1.0714 14 7 3.2010 -2.2487 -0.1286 15 6 4.0350 -3.2614 -0.2473 16 7 4.5964 -3.8326 0.8018 17 6 4.3455 -3.3959 2.0233 18 6 3.4750 -2.3338 2.1957 19 6 3.3785 -2.0629 3.6755 20 8 4.5167 -2.7136 4.2715 21 6 4.8151 -3.8162 3.3948 22 1 -0.3634 0.4394 0.9289 23 1 -0.3634 0.5848 -0.8451 24 1 -0.3634 -1.0242 -0.0839 25 1 1.8933 -0.5138 -0.8901 26 1 3.1266 1.4438 -0.0850 27 1 1.6089 1.9803 -0.8444 28 1 1.7476 1.9312 0.9295 29 1 0.0688 -1.3913 5.0445 30 1 4.2628 -3.6387 -1.2332 31 1 3.4177 -0.9900 3.8644 32 1 2.4541 -2.4805 4.0744 33 1 5.8883 -4.0061 3.3822 34 1 4.2791 -4.7085 3.7180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122456.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:20 Heat of formation + Delta-G solvation = 19.938469 kcal Electronic energy + Delta-G solvation = -19422.454845 eV Core-core repulsion = 16549.069089 eV Total energy + Delta-G solvation = -2873.385756 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.52143 -39.60743 -38.87948 -35.02718 -34.35334 -33.28990 -31.30849 -29.63732 -28.00373 -27.49097 -25.54132 -24.01201 -23.13822 -21.53962 -19.66865 -18.78592 -18.31033 -17.32174 -17.01991 -16.73390 -15.89556 -15.77789 -15.43338 -15.11233 -14.93658 -14.50782 -14.28820 -14.14628 -13.73904 -13.48637 -13.25805 -12.86841 -12.78023 -12.55899 -12.38905 -12.07984 -11.83959 -11.56542 -11.52633 -11.15879 -10.94450 -10.18525 -10.06342 -8.84935 -8.50497 -6.40313 0.04553 0.46288 1.05938 1.16081 1.22362 2.01554 2.36792 2.67099 2.77144 2.92879 2.99234 3.41694 3.77173 4.07101 4.13144 4.25330 4.31973 4.33685 4.50625 4.52695 4.62566 4.67978 4.84398 4.90488 4.99620 5.01440 5.04453 5.34608 5.41321 5.52421 5.60178 5.66799 5.92410 6.18302 6.57659 7.01267 7.16282 7.58013 8.51172 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.013808 C = 0.010330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.946313 B = 2027.360449 C = 2709.846120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.127 3.873 3 C -0.141 4.141 4 N -0.445 5.445 5 C -0.317 4.317 6 H 0.082 0.918 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.901 3.099 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.276 1.276 13 C 0.424 3.576 14 N -0.601 5.601 15 C 0.332 3.668 16 N -0.574 5.574 17 C 0.145 3.855 18 C -0.329 4.329 19 C 0.128 3.872 20 O -0.376 6.376 21 C 0.101 3.899 22 H 0.052 0.948 23 H 0.090 0.910 24 H 0.030 0.970 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.280 0.720 30 H 0.234 0.766 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 -2.761 -6.908 8.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 C -0.199 4.199 4 N -0.143 5.143 5 C -0.446 4.446 6 H 0.100 0.900 7 C -0.141 4.141 8 N -0.524 5.524 9 Si 0.728 3.272 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.181 3.819 14 N -0.327 5.327 15 C 0.043 3.957 16 N -0.298 5.298 17 C 0.003 3.997 18 C -0.341 4.341 19 C 0.051 3.949 20 O -0.295 6.295 21 C 0.024 3.976 22 H 0.071 0.929 23 H 0.108 0.892 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.250 0.750 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.324 -2.813 -7.344 8.538 hybrid contribution -0.835 -0.512 0.768 1.245 sum 2.489 -3.326 -6.576 7.778 Atomic orbital electron populations 1.21965 0.94817 1.00701 1.02698 1.21346 0.94638 0.93815 0.87799 1.21959 1.00217 0.95269 1.02505 1.42827 1.37879 1.27041 1.06541 1.18553 1.35469 0.99709 0.90866 0.90005 1.25880 0.93514 0.99539 0.95189 1.69729 1.37221 1.37136 1.08329 0.86683 0.77804 0.83599 0.79129 1.18968 1.21059 1.20123 1.18829 0.86199 0.89101 0.87800 1.68148 1.22623 1.18148 1.23828 1.25426 0.85680 0.86004 0.98591 1.67595 1.30538 1.34007 0.97616 1.22670 0.91314 0.90311 0.95405 1.21534 1.08813 1.06219 0.97573 1.21772 0.87686 0.98464 0.86971 1.89068 1.49545 1.44016 1.46823 1.21788 1.03707 0.90296 0.81773 0.92888 0.89161 0.95107 0.89092 0.93919 0.89304 0.93305 0.90901 0.75006 0.89238 0.92370 0.84655 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.17 71.98 0.66 -4.44 16 2 C 0.13 4.81 3.28 44.99 0.15 4.95 16 3 C -0.14 -4.63 9.30 71.98 0.67 -3.96 16 4 N -0.45 -20.29 1.97 -495.20 -0.97 -21.26 16 5 C -0.32 -15.88 6.17 84.04 0.52 -15.36 16 6 H 0.08 4.45 7.52 -2.91 -0.02 4.43 16 7 C 0.07 3.34 3.19 84.89 0.27 3.61 16 8 N -0.89 -47.53 13.95 21.65 0.30 -47.23 16 9 Si 0.90 43.43 22.98 68.60 1.58 45.01 16 10 H -0.26 -12.63 5.89 99.48 0.59 -12.05 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.28 -13.84 6.78 99.48 0.67 -13.16 16 13 C 0.42 19.38 5.29 132.95 0.70 20.08 16 14 N -0.60 -24.66 9.04 -197.74 -1.79 -26.45 16 15 C 0.33 11.74 12.27 180.85 2.22 13.96 16 16 N -0.57 -21.78 10.44 -188.03 -1.96 -23.75 16 17 C 0.15 5.94 7.56 42.63 0.32 6.26 16 18 C -0.33 -15.07 3.73 -19.61 -0.07 -15.14 16 19 C 0.13 5.96 5.03 71.25 0.36 6.32 16 20 O -0.38 -15.69 11.73 -148.98 -1.75 -17.44 16 21 C 0.10 3.55 7.63 71.31 0.54 4.09 16 22 H 0.05 2.08 7.40 -2.39 -0.02 2.06 16 23 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 3.37 6.87 -2.38 -0.02 3.36 16 26 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.75 7.26 -2.39 -0.02 1.73 16 29 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.23 5.71 8.06 -2.91 -0.02 5.68 16 31 H 0.09 4.53 6.86 -2.39 -0.02 4.52 16 32 H 0.06 2.89 3.80 -2.39 -0.01 2.88 16 33 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -59.31 267.41 2.70 -56.61 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.96 Total: 14.12 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.34 Total: 20.38 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -4.42 Total: -118.69 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.75 Total: -17.44 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.58 Total: 45.01 kcal Total: -59.31 2.70 -56.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122456.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.545 kcal (2) G-P(sol) polarization free energy of solvation -59.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds