Wall clock time and date at job start Mon Mar 30 2020 21:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00124 * 2 1 4 4 C 1.50692 * 109.47229 * 270.00077 * 3 2 1 5 5 H 1.08000 * 120.00239 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99812 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00019 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00146 * 359.97438 * 6 4 3 9 9 H 1.48508 * 109.46580 * 90.00293 * 8 6 4 10 10 H 1.48494 * 109.47086 * 210.00358 * 8 6 4 11 11 H 1.48497 * 109.47157 * 330.00797 * 8 6 4 12 12 C 1.38412 * 120.00053 * 179.97438 * 2 1 3 13 13 N 1.32513 * 119.22040 * 179.97438 * 12 2 1 14 14 C 1.32235 * 120.68351 * 180.11177 * 13 12 2 15 15 C 1.38775 * 119.16778 * 359.97322 * 14 13 12 16 16 C 1.38059 * 118.67425 * 359.87372 * 15 14 13 17 17 N 1.32436 * 119.21802 * 0.02592 * 12 2 1 18 18 C 1.50582 * 121.33130 * 180.49664 * 16 15 14 19 19 C 1.53037 * 109.65858 * 342.96565 * 18 16 15 20 20 O 1.42929 * 108.54702 * 49.12730 * 19 18 16 21 21 C 1.42812 * 113.40018 * 289.36902 * 20 19 18 22 22 H 1.08997 * 109.47371 * 269.99453 * 1 2 3 23 23 H 1.08993 * 109.47169 * 29.99744 * 1 2 3 24 24 H 1.09005 * 109.46961 * 149.99981 * 1 2 3 25 25 H 1.08997 * 109.46698 * 30.00364 * 3 2 1 26 26 H 1.09005 * 109.46851 * 150.00013 * 3 2 1 27 27 H 0.96996 * 120.00080 * 179.97438 * 7 6 4 28 28 H 1.08005 * 120.41714 * 179.97438 * 14 13 12 29 29 H 1.08997 * 109.44087 * 103.01783 * 18 16 15 30 30 H 1.09001 * 109.44529 * 222.90530 * 18 16 15 31 31 H 1.08996 * 109.61426 * 168.89681 * 19 18 16 32 32 H 1.08997 * 109.61076 * 289.25072 * 19 18 16 33 33 H 1.09002 * 109.36084 * 291.44097 * 21 20 19 34 34 H 1.08998 * 109.35690 * 171.71425 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4207 5 1 2.0981 1.0958 -2.2417 6 6 3.1269 2.8775 -1.6726 7 7 3.3457 3.2574 -2.9125 8 14 3.7339 3.9287 -0.2527 9 1 5.1071 3.5067 0.1238 10 1 3.7498 5.3553 -0.6645 11 1 2.8275 3.7595 0.9113 12 6 2.1570 -1.1987 0.0005 13 7 3.4820 -1.1806 0.0000 14 6 4.1722 -2.3086 -0.0017 15 6 3.4917 -3.5180 -0.0024 16 6 2.1112 -3.5012 0.0014 17 7 1.4793 -2.3365 0.0005 18 6 1.3127 -4.7779 0.0120 19 6 2.2067 -5.9478 -0.4050 20 8 3.4139 -5.8920 0.3581 21 6 4.2668 -4.8066 -0.0082 22 1 -0.3634 -0.0001 1.0276 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5139 27 1 3.8225 4.0833 -3.0897 28 1 5.2521 -2.2888 -0.0026 29 1 0.9268 -4.9561 1.0157 30 1 0.4800 -4.6908 -0.6859 31 1 1.6925 -6.8889 -0.2100 32 1 2.4383 -5.8707 -1.4673 33 1 4.6674 -4.9828 -1.0065 34 1 5.0890 -4.7370 0.7040 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:27 Heat of formation + Delta-G solvation = 19.821063 kcal Electronic energy + Delta-G solvation = -18062.191340 eV Core-core repulsion = 15188.800493 eV Total energy + Delta-G solvation = -2873.390847 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85872 -38.47408 -36.05556 -33.91434 -32.66770 -31.48606 -30.98966 -28.43002 -26.64336 -24.69302 -24.34498 -22.64131 -21.99119 -19.81450 -17.60257 -16.95240 -16.87637 -16.40196 -15.57569 -15.15081 -14.78726 -14.28228 -13.98812 -13.92443 -13.35289 -13.16371 -13.15177 -12.44177 -12.31359 -11.90936 -11.81532 -11.46864 -11.29747 -10.91234 -10.69365 -10.55689 -10.27173 -10.04837 -9.68871 -9.57915 -9.15764 -8.63005 -8.49685 -7.05803 -6.10792 -4.09588 1.59979 1.63906 3.26757 3.31951 3.34521 3.45001 3.78992 4.33518 4.36976 4.38732 4.70482 4.94564 5.01365 5.12425 5.19233 5.21327 5.31801 5.47347 5.52083 5.61841 5.74283 5.86598 5.96699 6.00612 6.15951 6.31233 6.57871 6.72457 6.94495 7.03059 7.44401 7.56893 7.59415 8.14057 8.46732 8.87449 8.95730 9.48853 11.02668 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035657 B = 0.005740 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.066909 B = 4877.273484 C = 5243.222731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.560 5.560 3 C 0.226 3.774 4 C -0.526 4.526 5 H 0.072 0.928 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.576 3.424 13 N -0.546 5.546 14 C 0.205 3.795 15 C -0.323 4.323 16 C 0.226 3.774 17 N -0.581 5.581 18 C -0.103 4.103 19 C 0.063 3.937 20 O -0.379 6.379 21 C 0.129 3.871 22 H 0.042 0.958 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.162 0.838 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -15.472 6.596 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.271 5.271 3 C 0.105 3.895 4 C -0.565 4.565 5 H 0.090 0.910 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.221 3.779 13 N -0.267 5.267 14 C 0.033 3.967 15 C -0.333 4.333 16 C 0.077 3.923 17 N -0.306 5.306 18 C -0.141 4.141 19 C -0.014 4.014 20 O -0.297 6.297 21 C 0.051 3.949 22 H 0.060 0.940 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.179 0.821 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.252 -14.268 6.635 15.895 hybrid contribution 0.774 0.276 0.264 0.863 sum -1.479 -13.991 6.899 15.670 Atomic orbital electron populations 1.21515 0.78892 1.02981 1.00389 1.46424 1.05449 1.02623 1.72614 1.19761 0.92359 0.78868 0.98477 1.21309 1.36875 1.07151 0.91146 0.90970 1.24832 0.95250 0.97244 0.95555 1.69898 1.41507 1.23564 1.18677 0.86847 0.80096 0.79797 0.82901 1.19833 1.21085 1.19116 1.19301 0.85295 0.86069 0.87258 1.68099 1.07190 1.30573 1.20858 1.22745 1.00011 0.86117 0.87781 1.21170 0.96085 0.98236 1.17812 1.20605 0.90278 0.92800 0.88571 1.67800 1.40643 0.97388 1.24734 1.21035 0.98465 0.90467 1.04161 1.22563 0.85420 0.97965 0.95438 1.87960 1.31549 1.48770 1.61401 1.21011 0.91387 0.82047 1.00442 0.93990 0.90848 0.91159 0.95080 0.93951 0.92552 0.82131 0.88848 0.88697 0.88069 0.92538 0.92368 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.94 10.44 59.84 0.62 2.56 16 2 N -0.56 -12.54 2.96 -185.34 -0.55 -13.09 16 3 C 0.23 5.58 4.23 -5.20 -0.02 5.56 16 4 C -0.53 -15.11 9.94 -34.44 -0.34 -15.45 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 8 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 12 C 0.58 12.63 8.17 -322.85 -2.64 9.99 16 13 N -0.55 -11.88 9.12 -13.90 -0.13 -12.00 16 14 C 0.21 3.50 10.98 -17.18 -0.19 3.31 16 15 C -0.32 -4.97 5.80 -104.64 -0.61 -5.57 16 16 C 0.23 3.71 6.68 -82.42 -0.55 3.16 16 17 N -0.58 -11.30 9.03 -10.28 -0.09 -11.39 16 18 C -0.10 -1.23 6.27 -27.92 -0.18 -1.41 16 19 C 0.06 0.64 6.84 37.18 0.25 0.89 16 20 O -0.38 -4.60 10.78 -35.23 -0.38 -4.98 16 21 C 0.13 1.51 6.72 35.85 0.24 1.75 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 24 H 0.07 1.23 7.33 -51.93 -0.38 0.85 16 25 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 26 H 0.04 1.08 6.76 -51.93 -0.35 0.73 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -33.78 286.26 -8.72 -42.50 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.49 Total: -2.04 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -3.50 Total: 6.82 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.01 Total: -63.28 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.38 Total: -4.98 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.78 -8.72 -42.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.324 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds