Wall clock time and date at job start Mon Mar 30 2020 21:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47072 * 2 1 4 4 C 1.50699 * 109.47350 * 239.99215 * 2 1 3 5 5 H 1.08000 * 120.00013 * 239.99504 * 4 2 1 6 6 C 1.37877 * 120.00126 * 60.00563 * 4 2 1 7 7 N 1.31517 * 119.99782 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00286 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46881 * 59.99484 * 8 6 4 10 10 H 1.48498 * 109.47023 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46971 * 300.00156 * 8 6 4 12 12 N 1.46505 * 109.46616 * 119.99117 * 2 1 3 13 13 C 1.38536 * 120.00263 * 275.00100 * 12 2 1 14 14 N 1.32990 * 120.56422 * 0.02562 * 13 12 2 15 15 C 1.31748 * 120.62345 * 180.02562 * 14 13 12 16 16 N 1.31744 * 121.85025 * 0.05858 * 15 14 13 17 17 C 1.32790 * 120.99754 * 0.02562 * 16 15 14 18 18 C 1.37561 * 119.14747 * 359.84776 * 17 16 15 19 19 C 1.50345 * 121.83885 * 180.27329 * 18 17 16 20 20 O 1.42828 * 110.15257 * 344.30652 * 19 18 17 21 21 C 1.43211 * 113.19980 * 51.33850 * 20 19 18 22 22 C 1.50582 * 119.49710 * 179.81865 * 17 16 15 23 23 H 1.08995 * 109.47543 * 300.00490 * 1 2 3 24 24 H 1.09008 * 109.46731 * 60.00793 * 1 2 3 25 25 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00027 * 180.02562 * 7 6 4 27 27 H 0.97001 * 119.99732 * 95.00683 * 12 2 1 28 28 H 1.07999 * 119.07334 * 180.08501 * 15 14 13 29 29 H 1.09002 * 109.35624 * 224.10337 * 19 18 17 30 30 H 1.08996 * 109.36017 * 104.51641 * 19 18 17 31 31 H 1.09007 * 109.61675 * 169.81961 * 21 20 19 32 32 H 1.08993 * 109.77055 * 49.36055 * 21 20 19 33 33 H 1.08996 * 109.43965 * 43.03410 * 22 17 16 34 34 H 1.09002 * 109.43367 * 283.14715 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6534 -1.5886 -1.1311 6 6 1.6995 -0.2396 -2.4827 7 7 0.9430 0.8294 -2.6035 8 14 2.3228 -1.1199 -4.0078 9 1 1.8283 -2.5202 -4.0078 10 1 1.8273 -0.4204 -5.2203 11 1 3.8077 -1.1194 -4.0074 12 7 2.0183 -0.6905 1.1964 13 6 2.1505 0.0008 2.3896 14 7 1.8370 1.2912 2.4620 15 6 1.9628 1.9498 3.5961 16 7 2.4001 1.3669 4.6937 17 6 2.7342 0.0818 4.6990 18 6 2.6163 -0.6459 3.5376 19 6 2.9717 -2.1055 3.4767 20 8 3.7485 -2.4709 4.6182 21 6 3.1515 -2.0730 5.8577 22 6 3.2340 -0.5491 5.9717 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.7085 1.1605 -3.4846 27 1 2.2490 -1.6316 1.1529 28 1 1.6997 2.9968 3.6269 29 1 3.5467 -2.2999 2.5713 30 1 2.0579 -2.6994 3.4564 31 1 3.6899 -2.5317 6.6871 32 1 2.1077 -2.3858 5.8813 33 1 2.6204 -0.2142 6.8079 34 1 4.2694 -0.2535 6.1408 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260235562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:35 Heat of formation + Delta-G solvation = -1.375303 kcal Electronic energy + Delta-G solvation = -18169.140054 eV Core-core repulsion = 15294.830064 eV Total energy + Delta-G solvation = -2874.309990 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88232 -38.23635 -36.41284 -33.66134 -32.91840 -31.28486 -30.81465 -28.32544 -25.95884 -25.27932 -24.49424 -22.34550 -21.34704 -20.09979 -18.06343 -17.04096 -16.42159 -16.23805 -15.54209 -15.03878 -14.81100 -14.45652 -14.24023 -13.65600 -13.40604 -13.16545 -12.65560 -12.47570 -12.06115 -11.81928 -11.39940 -11.25027 -11.07747 -10.86413 -10.64814 -10.35088 -10.27440 -10.06595 -9.58171 -9.21882 -9.02616 -8.66445 -8.50033 -7.32685 -6.18595 -4.28331 1.42240 1.88981 3.22208 3.27589 3.28782 3.79207 3.86758 4.29265 4.31715 4.34648 4.70452 4.83740 5.07334 5.14077 5.15010 5.21507 5.43056 5.48678 5.53799 5.62952 5.80697 5.95851 6.18828 6.65332 6.81014 6.95377 7.03549 7.06831 7.29127 7.45989 7.58740 7.78582 7.97501 8.13764 8.40880 8.70725 8.92471 9.38529 10.87146 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.005864 C = 0.005202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.976156 B = 4773.569803 C = 5380.949725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.056 0.944 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.679 5.679 13 C 0.456 3.544 14 N -0.568 5.568 15 C 0.336 3.664 16 N -0.583 5.583 17 C 0.205 3.795 18 C -0.313 4.313 19 C 0.123 3.877 20 O -0.374 6.374 21 C 0.060 3.940 22 C -0.101 4.101 23 H 0.015 0.985 24 H 0.091 0.909 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.399 0.601 28 H 0.188 0.812 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -4.018 13.310 14.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.167 3.833 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.305 5.305 13 C 0.207 3.793 14 N -0.294 5.294 15 C 0.046 3.954 16 N -0.305 5.305 17 C 0.064 3.936 18 C -0.325 4.325 19 C 0.045 3.955 20 O -0.292 6.292 21 C -0.017 4.017 22 C -0.139 4.139 23 H 0.034 0.966 24 H 0.110 0.890 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.235 0.765 28 H 0.205 0.795 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.925 -2.980 12.914 13.392 hybrid contribution 0.263 -1.303 -1.015 1.672 sum 2.188 -4.282 11.899 12.834 Atomic orbital electron populations 1.22083 0.98344 0.99005 1.00950 1.18865 0.91039 0.94118 0.79249 0.92657 1.21164 1.32791 1.13421 0.90365 0.92203 1.24855 0.94698 0.94923 0.99004 1.69884 1.35591 1.22326 1.24091 0.86492 0.79214 0.79604 0.81724 1.20134 1.21042 1.20141 1.45654 1.65272 1.12137 1.07429 1.18536 0.86094 0.88430 0.86221 1.68161 1.24806 1.07240 1.29156 1.24561 0.88691 0.99661 0.82482 1.68285 1.20247 1.10647 1.31296 1.20566 0.90095 0.89552 0.93406 1.20851 1.16279 0.99713 0.95686 1.20998 0.95601 0.89592 0.89297 1.88064 1.47781 1.79398 1.13988 1.22631 0.98722 0.93061 0.87292 1.20996 1.02819 0.95560 0.94552 0.96584 0.89025 0.95704 0.92440 0.76513 0.79504 0.88268 0.92200 0.88066 0.92586 0.88741 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.27 37.16 0.34 -3.16 16 2 C 0.27 6.61 2.59 -69.08 -0.18 6.43 16 3 H 0.06 1.54 7.57 -51.93 -0.39 1.15 16 4 C -0.54 -14.04 8.73 -34.44 -0.30 -14.34 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.68 -14.04 5.12 -54.87 -0.28 -14.32 16 13 C 0.46 9.05 7.47 -154.73 -1.16 7.90 16 14 N -0.57 -11.66 9.36 -13.79 -0.13 -11.79 16 15 C 0.34 5.90 12.28 -92.24 -1.13 4.76 16 16 N -0.58 -9.96 10.36 -11.01 -0.11 -10.08 16 17 C 0.21 3.32 6.68 -82.48 -0.55 2.77 16 18 C -0.31 -5.35 5.82 -104.48 -0.61 -5.96 16 19 C 0.12 1.77 5.91 35.83 0.21 1.98 16 20 O -0.37 -5.15 10.81 -35.23 -0.38 -5.53 16 21 C 0.06 0.64 6.84 37.18 0.25 0.90 16 22 C -0.10 -1.21 6.27 -27.92 -0.18 -1.38 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 2.41 6.07 -51.92 -0.32 2.09 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.40 7.36 6.89 -40.82 -0.28 7.07 16 28 H 0.19 2.62 8.06 -52.49 -0.42 2.19 16 29 H 0.10 1.40 7.32 -51.93 -0.38 1.02 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -29.57 283.86 -8.70 -38.27 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -4.29 Total: 5.82 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.39 Total: 1.62 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.10 Total: -59.84 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.38 Total: -5.53 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.57 -8.70 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260235562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.893 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds