Wall clock time and date at job start Mon Mar 30 2020 21:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35521 * 117.00472 * 2 1 4 4 N 1.32577 * 120.35413 * 0.28256 * 3 2 1 5 5 C 1.32510 * 120.45281 * 180.26094 * 4 3 2 6 6 N 1.38425 * 119.23938 * 179.87855 * 5 4 3 7 7 C 1.36989 * 119.99591 * 359.72747 * 6 5 4 8 8 H 1.08000 * 120.00570 * 0.02562 * 7 6 5 9 9 C 1.38835 * 120.00191 * 179.97438 * 7 6 5 10 10 N 1.31547 * 119.99323 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00298 * 179.72182 * 9 7 6 12 12 H 1.48506 * 109.46753 * 60.00610 * 11 9 7 13 13 H 1.48497 * 109.47201 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47346 * 300.00510 * 11 9 7 15 15 N 1.32339 * 121.52534 * 359.60010 * 5 4 3 16 16 C 1.32961 * 121.18414 * 0.15629 * 15 5 4 17 17 C 1.37509 * 119.00404 * 359.93059 * 16 15 5 18 18 C 1.50368 * 122.82174 * 180.37267 * 17 16 15 19 19 C 1.52818 * 110.46879 * 342.46448 * 18 17 16 20 20 C 1.53319 * 108.45644 * 50.81053 * 19 18 17 21 21 C 1.50470 * 118.40562 * 179.70608 * 16 15 5 22 22 H 1.09004 * 109.46662 * 299.99779 * 1 2 3 23 23 H 1.09002 * 109.47403 * 59.99198 * 1 2 3 24 24 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00539 * 179.72784 * 6 5 4 26 26 H 0.97000 * 119.99357 * 179.97438 * 10 9 7 27 27 H 1.08992 * 109.30537 * 222.15698 * 18 17 16 28 28 H 1.09005 * 109.13852 * 102.66323 * 18 17 16 29 29 H 1.08999 * 109.64049 * 291.12123 * 19 18 17 30 30 H 1.08997 * 109.64511 * 170.49875 * 19 18 17 31 31 H 1.08997 * 109.63597 * 170.57159 * 20 19 18 32 32 H 1.09001 * 109.63468 * 49.96558 * 20 19 18 33 33 H 1.08994 * 109.30804 * 282.83295 * 21 16 15 34 34 H 1.09005 * 109.29640 * 42.41540 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3292 2.3238 0.0056 5 6 1.9288 3.5055 0.0005 6 7 1.1577 4.6550 0.0040 7 6 -0.2091 4.5628 0.0071 8 1 -0.6850 3.5934 0.0072 9 6 -0.9826 5.7157 0.0112 10 7 -0.4030 6.8966 0.0116 11 14 -2.8464 5.5900 0.0076 12 1 -3.2950 4.8528 1.2161 13 1 -3.4344 6.9536 0.0123 14 1 -3.2912 4.8638 -1.2089 15 7 3.2479 3.6121 -0.0026 16 6 4.0258 2.5338 -0.0036 17 6 3.4405 1.2895 0.0000 18 6 4.2370 0.0141 0.0074 19 6 5.6792 0.2822 -0.4212 20 6 6.2265 1.4439 0.4164 21 6 5.5179 2.7275 -0.0138 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5850 5.5258 0.0042 26 1 -0.9434 7.7021 0.0140 27 1 3.7830 -0.6983 -0.6813 28 1 4.2322 -0.4044 1.0139 29 1 5.7038 0.5490 -1.4778 30 1 6.2837 -0.6086 -0.2511 31 1 7.2988 1.5435 0.2481 32 1 6.0345 1.2560 1.4728 33 1 5.8395 2.9968 -1.0198 34 1 5.7817 3.5297 0.6755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260496189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:10 Heat of formation + Delta-G solvation = -0.896234 kcal Electronic energy + Delta-G solvation = -18180.769362 eV Core-core repulsion = 15306.480146 eV Total energy + Delta-G solvation = -2874.289216 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31661 -37.86027 -36.86014 -34.67362 -32.24035 -31.78204 -30.23997 -28.61658 -26.86155 -24.91214 -23.50346 -22.18872 -21.79773 -19.41461 -18.39331 -17.38997 -16.57159 -15.64224 -15.53723 -14.74327 -14.47176 -14.04834 -13.78301 -13.62599 -13.48650 -13.25904 -12.73749 -12.46035 -11.92690 -11.66338 -11.53973 -11.30553 -11.06511 -10.91811 -10.59374 -10.54574 -10.45442 -10.33779 -9.95633 -9.51577 -9.01067 -8.57915 -8.05458 -7.19146 -6.63922 -3.85436 2.20617 2.34022 3.13850 3.15096 3.16673 3.65574 3.95342 4.54203 4.65085 4.98490 5.17447 5.18903 5.25133 5.31062 5.62521 5.72089 5.77381 5.82150 5.89213 5.95196 6.05088 6.10720 6.12980 6.28412 6.33016 6.36137 6.45482 6.61775 6.88857 7.12854 7.33737 7.69909 7.92104 8.25930 8.59769 8.99236 9.23919 9.82311 10.52259 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.006536 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.066509 B = 4283.203350 C = 5189.470530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.311 6.311 3 C 0.401 3.599 4 N -0.621 5.621 5 C 0.527 3.473 6 N -0.501 5.501 7 C -0.283 4.283 8 H 0.112 0.888 9 C 0.020 3.980 10 N -0.886 5.886 11 Si 0.940 3.060 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.271 1.271 15 N -0.618 5.618 16 C 0.247 3.753 17 C -0.328 4.328 18 C -0.034 4.034 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.063 4.063 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.412 0.588 26 H 0.278 0.722 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 -10.280 -0.057 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.207 3.793 4 N -0.363 5.363 5 C 0.171 3.829 6 N -0.112 5.112 7 C -0.415 4.415 8 H 0.130 0.870 9 C -0.185 4.185 10 N -0.523 5.523 11 Si 0.766 3.234 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.196 1.196 15 N -0.347 5.347 16 C 0.098 3.902 17 C -0.341 4.341 18 C -0.073 4.073 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.101 4.101 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.250 0.750 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.798 -9.307 -0.054 10.965 hybrid contribution -0.730 -0.105 -0.004 0.737 sum 5.068 -9.412 -0.059 10.690 Atomic orbital electron populations 1.22748 0.78132 1.01690 1.02808 1.86133 1.22237 1.25487 1.87747 1.19629 0.88449 0.84115 0.87072 1.67360 1.40021 0.97595 1.31344 1.18535 0.84483 0.85416 0.94421 1.40530 1.05452 1.03674 1.61552 1.19880 0.79856 0.95223 1.46522 0.87002 1.25433 1.01464 0.94485 0.97080 1.69684 1.37268 0.97779 1.47577 0.85766 0.80896 0.77538 0.79201 1.19633 1.20677 1.19640 1.67709 1.04434 1.33103 1.29474 1.20335 0.94975 0.86766 0.88158 1.19159 0.90762 0.96412 1.27809 1.19721 0.93183 0.94028 1.00332 1.21556 0.96356 0.97791 0.99824 1.21539 0.98835 0.94627 1.00286 1.20247 0.89005 0.98308 1.02578 0.92401 0.92433 0.89550 0.75022 0.91245 0.92224 0.92838 0.91999 0.92170 0.91674 0.91694 0.90145 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.40 101.05 1.05 1.72 16 2 O -0.31 -5.85 9.68 -18.26 -0.18 -6.03 16 3 C 0.40 8.64 7.49 -16.62 -0.12 8.52 16 4 N -0.62 -15.08 8.04 -13.93 -0.11 -15.19 16 5 C 0.53 13.37 8.38 -322.96 -2.71 10.66 16 6 N -0.50 -13.29 5.43 -12.83 -0.07 -13.36 16 7 C -0.28 -7.61 9.69 -15.03 -0.15 -7.76 16 8 H 0.11 2.99 7.05 -52.49 -0.37 2.62 16 9 C 0.02 0.52 5.50 -17.45 -0.10 0.42 16 10 N -0.89 -23.84 13.05 55.49 0.72 -23.12 16 11 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 N -0.62 -14.48 10.33 -10.37 -0.11 -14.59 16 16 C 0.25 4.95 6.62 -82.48 -0.55 4.40 16 17 C -0.33 -6.42 5.75 -104.44 -0.60 -7.02 16 18 C -0.03 -0.52 5.35 -28.14 -0.15 -0.67 16 19 C -0.12 -1.46 5.98 -26.66 -0.16 -1.62 16 20 C -0.11 -1.40 5.97 -26.67 -0.16 -1.56 16 21 C -0.06 -0.96 5.95 -28.10 -0.17 -1.13 16 22 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 23 H 0.06 0.97 8.12 -51.93 -0.42 0.54 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.41 11.08 8.01 -40.82 -0.33 10.76 16 26 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.06 0.90 7.85 -51.93 -0.41 0.50 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -29.10 286.99 -8.70 -37.80 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.46 Total: 9.11 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -3.80 Total: 5.96 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.44 Total: -66.26 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.18 Total: -6.03 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.10 -8.70 -37.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.906 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds