Wall clock time and date at job start Mon Mar 30 2020 21:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35521 * 117.00472 * 2 1 4 4 N 1.32577 * 120.35413 * 0.28256 * 3 2 1 5 5 C 1.32510 * 120.45281 * 180.26094 * 4 3 2 6 6 N 1.38425 * 119.23938 * 179.87855 * 5 4 3 7 7 C 1.36989 * 119.99591 * 359.72747 * 6 5 4 8 8 H 1.08000 * 120.00570 * 0.02562 * 7 6 5 9 9 C 1.38835 * 120.00191 * 179.97438 * 7 6 5 10 10 N 1.31547 * 119.99323 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00298 * 179.72182 * 9 7 6 12 12 H 1.48506 * 109.46753 * 60.00610 * 11 9 7 13 13 H 1.48497 * 109.47201 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47346 * 300.00510 * 11 9 7 15 15 N 1.32339 * 121.52534 * 359.60010 * 5 4 3 16 16 C 1.32961 * 121.18414 * 0.15629 * 15 5 4 17 17 C 1.37509 * 119.00404 * 359.93059 * 16 15 5 18 18 C 1.50368 * 122.82174 * 180.37267 * 17 16 15 19 19 C 1.52818 * 110.46879 * 342.46448 * 18 17 16 20 20 C 1.53319 * 108.45644 * 50.81053 * 19 18 17 21 21 C 1.50470 * 118.40562 * 179.70608 * 16 15 5 22 22 H 1.09004 * 109.46662 * 299.99779 * 1 2 3 23 23 H 1.09002 * 109.47403 * 59.99198 * 1 2 3 24 24 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00539 * 179.72784 * 6 5 4 26 26 H 0.97000 * 119.99357 * 179.97438 * 10 9 7 27 27 H 1.08992 * 109.30537 * 222.15698 * 18 17 16 28 28 H 1.09005 * 109.13852 * 102.66323 * 18 17 16 29 29 H 1.08999 * 109.64049 * 291.12123 * 19 18 17 30 30 H 1.08997 * 109.64511 * 170.49875 * 19 18 17 31 31 H 1.08997 * 109.63597 * 170.57159 * 20 19 18 32 32 H 1.09001 * 109.63468 * 49.96558 * 20 19 18 33 33 H 1.08994 * 109.30804 * 282.83295 * 21 16 15 34 34 H 1.09005 * 109.29640 * 42.41540 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3292 2.3238 0.0056 5 6 1.9288 3.5055 0.0005 6 7 1.1577 4.6550 0.0040 7 6 -0.2091 4.5628 0.0071 8 1 -0.6850 3.5934 0.0072 9 6 -0.9826 5.7157 0.0112 10 7 -0.4030 6.8966 0.0116 11 14 -2.8464 5.5900 0.0076 12 1 -3.2950 4.8528 1.2161 13 1 -3.4344 6.9536 0.0123 14 1 -3.2912 4.8638 -1.2089 15 7 3.2479 3.6121 -0.0026 16 6 4.0258 2.5338 -0.0036 17 6 3.4405 1.2895 0.0000 18 6 4.2370 0.0141 0.0074 19 6 5.6792 0.2822 -0.4212 20 6 6.2265 1.4439 0.4164 21 6 5.5179 2.7275 -0.0138 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5850 5.5258 0.0042 26 1 -0.9434 7.7021 0.0140 27 1 3.7830 -0.6983 -0.6813 28 1 4.2322 -0.4044 1.0139 29 1 5.7038 0.5490 -1.4778 30 1 6.2837 -0.6086 -0.2511 31 1 7.2988 1.5435 0.2481 32 1 6.0345 1.2560 1.4728 33 1 5.8395 2.9968 -1.0198 34 1 5.7817 3.5297 0.6755 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260496189.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:09 Heat of formation + Delta-G solvation = -18.566710 kcal Electronic energy + Delta-G solvation = -18181.535612 eV Core-core repulsion = 15306.480146 eV Total energy + Delta-G solvation = -2875.055466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99665 -39.41040 -38.35701 -36.37836 -33.87419 -33.60951 -31.70244 -30.11378 -28.27462 -26.76015 -24.93147 -23.73534 -23.29783 -20.76449 -20.20822 -18.98489 -18.31930 -17.33608 -17.11705 -16.27542 -16.02867 -15.59066 -15.36336 -15.24853 -14.85483 -14.55279 -14.09832 -13.86323 -13.44888 -13.34399 -12.88824 -12.85941 -12.59517 -12.51281 -12.14630 -12.10264 -11.72143 -11.52967 -11.52912 -11.01445 -10.72923 -10.37969 -9.82400 -8.94705 -8.54986 -5.86863 0.50497 0.60374 1.38588 1.47150 1.51125 2.10369 2.21597 2.76012 2.81816 3.36767 3.47783 3.98967 4.08745 4.16121 4.24925 4.37528 4.41264 4.47874 4.64768 4.72666 4.77918 4.81772 4.86988 5.07680 5.13121 5.24641 5.30513 5.35684 5.47942 5.58176 5.61165 5.85083 6.21596 6.52758 6.66460 7.10788 7.32742 7.94147 8.62987 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.006536 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.066509 B = 4283.203350 C = 5189.470530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.381 3.619 4 N -0.645 5.645 5 C 0.521 3.479 6 N -0.528 5.528 7 C -0.307 4.307 8 H 0.103 0.897 9 C -0.024 4.024 10 N -0.923 5.923 11 Si 1.007 2.993 12 H -0.266 1.266 13 H -0.274 1.274 14 H -0.266 1.266 15 N -0.638 5.638 16 C 0.233 3.767 17 C -0.316 4.316 18 C -0.035 4.035 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.063 4.063 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.135 0.865 25 H 0.404 0.596 26 H 0.279 0.721 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.129 -12.721 -0.083 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.189 3.811 4 N -0.387 5.387 5 C 0.166 3.834 6 N -0.142 5.142 7 C -0.438 4.438 8 H 0.121 0.879 9 C -0.224 4.224 10 N -0.562 5.562 11 Si 0.829 3.171 12 H -0.191 1.191 13 H -0.199 1.199 14 H -0.191 1.191 15 N -0.369 5.369 16 C 0.086 3.914 17 C -0.328 4.328 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.146 4.146 21 C -0.101 4.101 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.153 0.847 25 H 0.240 0.760 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.269 -11.854 -0.080 13.906 hybrid contribution -0.960 0.390 0.004 1.036 sum 6.310 -11.465 -0.076 13.087 Atomic orbital electron populations 1.22983 0.76559 1.04430 1.01540 1.86149 1.23702 1.23797 1.87363 1.20150 0.89629 0.84268 0.87048 1.67336 1.41169 0.98079 1.32137 1.18884 0.85344 0.85644 0.93565 1.40487 1.05449 1.03536 1.64743 1.19952 0.80409 0.95263 1.48166 0.87913 1.26310 1.05823 0.93825 0.96488 1.69784 1.38744 0.98315 1.49375 0.84776 0.75268 0.77740 0.79297 1.19086 1.19919 1.19112 1.67823 1.03877 1.34907 1.30278 1.21320 0.97233 0.86207 0.86657 1.19849 0.90580 0.98356 1.23994 1.19868 0.94734 0.91536 1.01252 1.21572 0.94419 0.99317 0.99746 1.21565 1.00450 0.92522 1.00048 1.20451 0.85587 1.00475 1.03606 0.93703 0.93712 0.84727 0.76039 0.91144 0.91779 0.91773 0.91963 0.88852 0.88128 0.91771 0.88808 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.23 10.40 113.37 1.18 2.41 16 2 O -0.31 -11.10 9.68 -88.24 -0.85 -11.95 16 3 C 0.38 16.30 7.49 84.97 0.64 16.93 16 4 N -0.64 -32.09 8.04 -310.76 -2.50 -34.59 16 5 C 0.52 27.43 8.38 261.54 2.19 29.63 16 6 N -0.53 -29.53 5.43 -194.50 -1.06 -30.58 16 7 C -0.31 -17.28 9.69 84.03 0.81 -16.46 16 8 H 0.10 5.77 7.05 -2.91 -0.02 5.75 16 9 C -0.02 -1.30 5.50 84.88 0.47 -0.84 16 10 N -0.92 -51.65 13.05 21.65 0.28 -51.37 16 11 Si 1.01 42.21 29.55 68.60 2.03 44.24 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 15 N -0.64 -30.48 10.33 -186.73 -1.93 -32.40 16 16 C 0.23 9.09 6.62 42.14 0.28 9.37 16 17 C -0.32 -11.91 5.75 -19.75 -0.11 -12.02 16 18 C -0.04 -0.97 5.35 29.68 0.16 -0.81 16 19 C -0.11 -2.29 5.98 30.64 0.18 -2.11 16 20 C -0.11 -2.17 5.97 30.64 0.18 -1.98 16 21 C -0.06 -1.76 5.95 29.71 0.18 -1.58 16 22 H 0.04 1.50 8.11 -2.38 -0.02 1.48 16 23 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 24 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 25 H 0.40 23.11 8.01 -92.71 -0.74 22.36 16 26 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.06 1.73 7.85 -2.39 -0.02 1.71 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 Total: -1.00 -66.14 286.99 2.50 -63.63 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.37 Total: 30.50 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 6.16 Total: 22.53 kcal Atomic # 7 Polarization: -143.74 SS G_CDS: -5.20 Total: -148.94 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.85 Total: -11.95 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -66.14 2.50 -63.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496189.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.067 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds