Wall clock time and date at job start Mon Mar 30 2020 21:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34776 * 120.00040 * 2 1 4 4 N 1.34775 * 120.00052 * 359.97438 * 3 2 1 5 5 O 1.21588 * 120.00256 * 180.02562 * 3 2 1 6 6 C 1.39948 * 120.00115 * 180.02562 * 2 1 3 7 7 C 1.38892 * 120.07032 * 90.29061 * 6 2 1 8 8 C 1.38089 * 119.92388 * 180.29743 * 7 6 2 9 9 C 1.38302 * 120.07618 * 359.68653 * 8 7 6 10 10 C 1.38263 * 120.13655 * 0.02562 * 9 8 7 11 11 C 1.38136 * 120.07095 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.03358 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.46689 * 145.00075 * 12 11 10 14 14 N 1.46899 * 109.47199 * 25.00080 * 12 11 10 15 15 C 1.50697 * 109.46891 * 264.99424 * 12 11 10 16 16 H 1.08003 * 120.00281 * 5.52732 * 15 12 11 17 17 C 1.37882 * 119.99745 * 185.24078 * 15 12 11 18 18 N 1.31511 * 120.00055 * 6.47581 * 17 15 12 19 19 Si 1.86801 * 119.99885 * 186.46860 * 17 15 12 20 20 H 1.48496 * 109.47229 * 94.55346 * 19 17 15 21 21 H 1.48499 * 109.46900 * 214.55189 * 19 17 15 22 22 H 1.48498 * 109.47074 * 334.55337 * 19 17 15 23 23 H 1.08992 * 109.46650 * 270.00198 * 1 2 3 24 24 H 1.08996 * 109.46970 * 30.00253 * 1 2 3 25 25 H 1.09000 * 109.46886 * 150.00090 * 1 2 3 26 26 H 0.97002 * 120.00265 * 0.02562 * 4 3 2 27 27 H 0.96999 * 120.00379 * 179.97438 * 4 3 2 28 28 H 1.08000 * 120.03550 * 359.97438 * 7 6 2 29 29 H 1.08006 * 119.96032 * 179.70495 * 8 7 6 30 30 H 1.08001 * 119.93335 * 180.02562 * 9 8 7 31 31 H 1.08001 * 119.96256 * 180.02562 * 10 9 8 32 32 H 1.00900 * 110.99917 * 173.31375 * 14 12 11 33 33 H 1.00905 * 110.99645 * 297.26712 * 14 12 11 34 34 H 0.97003 * 119.99943 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 7 1.4651 2.3344 -0.0005 5 8 3.3548 1.1672 -0.0005 6 6 2.1648 -1.2120 -0.0005 7 6 2.5181 -1.8111 -1.2028 8 6 3.2031 -3.0100 -1.1998 9 6 3.5432 -3.6111 -0.0015 10 6 3.1982 -3.0142 1.1969 11 6 2.5120 -1.8153 1.2008 12 6 2.1358 -1.1658 2.5076 13 1 2.1951 -0.0821 2.4050 14 7 3.0607 -1.6094 3.5591 15 6 0.7288 -1.5590 2.8773 16 1 0.1955 -2.2829 2.2790 17 6 0.1245 -0.9990 3.9829 18 7 0.7241 -0.0305 4.6402 19 14 -1.5461 -1.6158 4.5469 20 1 -1.3633 -2.6483 5.5985 21 1 -2.3322 -0.4825 5.0972 22 1 -2.2707 -2.2071 3.3934 23 1 -0.3632 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 0.4951 2.3344 -0.0005 27 1 1.9500 3.1744 -0.0001 28 1 2.2527 -1.3423 -2.1389 29 1 3.4740 -3.4788 -2.1344 30 1 4.0794 -4.5486 -0.0019 31 1 3.4655 -3.4858 2.1310 32 1 2.8988 -1.1067 4.4188 33 1 2.9921 -2.6056 3.7042 34 1 0.2987 0.3637 5.4177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260982074.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:30 Heat of formation + Delta-G solvation = -18.368816 kcal Electronic energy + Delta-G solvation = -18840.451378 eV Core-core repulsion = 15965.404494 eV Total energy + Delta-G solvation = -2875.046884 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.55222 -39.61689 -36.49516 -36.33947 -34.46746 -33.58372 -30.90457 -30.57132 -28.11588 -27.32452 -24.80290 -23.84603 -21.69047 -20.93342 -19.37101 -18.54233 -18.12003 -17.48604 -17.00257 -16.62682 -16.09388 -15.69594 -15.21538 -15.11288 -14.75720 -14.54436 -13.92253 -13.84617 -13.55460 -13.28533 -13.12779 -12.89528 -12.80873 -12.49456 -12.02634 -11.91102 -11.42304 -11.27391 -10.68643 -10.66659 -9.63223 -9.58925 -9.45789 -9.13603 -8.09847 -6.31903 0.51746 0.70480 1.36878 1.41257 1.49800 1.90281 2.24135 2.37558 2.99746 3.09869 3.42983 4.16756 4.20337 4.28209 4.32652 4.49259 4.60320 4.84822 4.85585 4.89323 5.04537 5.16629 5.47274 5.53792 5.63468 5.66635 5.76014 5.93525 5.99377 6.03712 6.13526 6.40292 6.70835 6.85112 6.95773 7.07585 7.39421 7.69445 8.87463 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.010203 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.155303 B = 2743.571895 C = 3413.019033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.573 5.573 3 C 0.703 3.297 4 N -0.845 5.845 5 O -0.641 6.641 6 C 0.125 3.875 7 C -0.121 4.121 8 C -0.130 4.130 9 C -0.116 4.116 10 C -0.126 4.126 11 C -0.058 4.058 12 C 0.255 3.745 13 H 0.007 0.993 14 N -0.847 5.847 15 C -0.535 4.535 16 H 0.048 0.952 17 C 0.027 3.973 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.282 1.282 21 H -0.285 1.285 22 H -0.265 1.265 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.410 0.590 27 H 0.419 0.581 28 H 0.132 0.868 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.122 0.878 32 H 0.335 0.665 33 H 0.321 0.679 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -2.022 -10.513 11.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.306 5.306 3 C 0.403 3.597 4 N -0.416 5.416 5 O -0.522 6.522 6 C 0.033 3.967 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.134 4.134 10 C -0.145 4.145 11 C -0.060 4.060 12 C 0.145 3.855 13 H 0.025 0.975 14 N -0.374 5.374 15 C -0.575 4.575 16 H 0.067 0.933 17 C -0.173 4.173 18 N -0.555 5.555 19 Si 0.779 3.221 20 H -0.208 1.208 21 H -0.211 1.211 22 H -0.190 1.190 23 H 0.069 0.931 24 H 0.116 0.884 25 H 0.099 0.901 26 H 0.243 0.757 27 H 0.252 0.748 28 H 0.150 0.850 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.790 -1.756 -10.859 11.145 hybrid contribution -1.997 0.165 1.452 2.474 sum -3.787 -1.592 -9.408 10.265 Atomic orbital electron populations 1.21944 0.77299 1.04006 1.02638 1.44091 1.07156 1.02461 1.76884 1.16114 0.84730 0.81730 0.77126 1.42784 1.11312 1.06047 1.81446 1.90891 1.13933 1.87048 1.60352 1.17365 0.99157 0.87208 0.92922 1.21405 0.99437 0.96715 0.96464 1.21239 0.99351 0.95114 0.99156 1.21474 0.99551 1.00646 0.91706 1.21043 0.99192 0.95144 0.99160 1.20698 0.94541 0.95237 0.95530 1.17571 0.89233 0.92991 0.85670 0.97514 1.59466 1.56778 1.08441 1.12704 1.21733 1.00170 1.24383 1.11184 0.93348 1.25676 1.00791 0.94191 0.96660 1.70031 1.40507 1.24944 1.19978 0.85627 0.80100 0.77800 0.78566 1.20764 1.21066 1.18969 0.93122 0.88378 0.90123 0.75744 0.74792 0.85038 0.82599 0.83136 0.86015 0.85268 0.86767 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.59 10.10 127.77 1.29 3.88 16 2 N -0.57 -22.41 2.10 -671.54 -1.41 -23.82 16 3 C 0.70 28.91 7.88 179.06 1.41 30.32 16 4 N -0.85 -24.86 8.74 -184.75 -1.61 -26.48 16 5 O -0.64 -32.47 17.15 -3.99 -0.07 -32.54 16 6 C 0.12 5.22 4.44 38.15 0.17 5.39 16 7 C -0.12 -4.18 9.97 22.39 0.22 -3.96 16 8 C -0.13 -3.87 10.04 22.25 0.22 -3.64 16 9 C -0.12 -3.66 10.04 22.29 0.22 -3.44 16 10 C -0.13 -5.04 9.27 22.25 0.21 -4.83 16 11 C -0.06 -2.67 5.01 -19.74 -0.10 -2.77 16 12 C 0.26 13.25 2.50 43.42 0.11 13.36 16 13 H 0.01 0.42 7.06 -2.38 -0.02 0.41 16 14 N -0.85 -42.42 8.73 -174.95 -1.53 -43.95 16 15 C -0.54 -27.78 7.50 25.60 0.19 -27.58 16 16 H 0.05 2.53 7.75 -2.91 -0.02 2.51 16 17 C 0.03 1.42 5.35 84.66 0.45 1.87 16 18 N -0.92 -50.50 12.18 21.45 0.26 -50.24 16 19 Si 0.95 41.12 29.54 68.60 2.03 43.14 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H 0.05 1.90 7.06 -2.39 -0.02 1.88 16 24 H 0.10 2.15 6.36 -2.39 -0.02 2.14 16 25 H 0.08 2.29 8.05 -2.39 -0.02 2.27 16 26 H 0.41 9.39 6.56 -92.71 -0.61 8.79 16 27 H 0.42 10.74 8.93 -92.71 -0.83 9.91 16 28 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 29 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 31 H 0.12 4.71 6.36 -2.91 -0.02 4.69 16 32 H 0.34 17.89 7.82 -89.69 -0.70 17.19 16 33 H 0.32 14.81 7.34 -89.69 -0.66 14.15 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -71.12 287.65 0.44 -70.68 By element: Atomic # 1 Polarization: 56.22 SS G_CDS: -1.62 Total: 54.60 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.40 Total: 8.60 kcal Atomic # 7 Polarization: -140.19 SS G_CDS: -4.29 Total: -144.48 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.07 Total: -32.54 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -71.12 0.44 -70.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982074.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.311 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds