Wall clock time and date at job start Mon Mar 30 2020 21:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00375 * 2 1 4 4 N 1.34782 * 119.99675 * 5.32148 * 3 2 1 5 5 O 1.21580 * 120.00200 * 185.32569 * 3 2 1 6 6 C 1.39943 * 119.99883 * 179.97438 * 2 1 3 7 7 C 1.38886 * 120.06427 * 114.54348 * 6 2 1 8 8 C 1.38101 * 119.92925 * 180.02562 * 7 6 2 9 9 C 1.38307 * 120.06518 * 0.02562 * 8 7 6 10 10 C 1.38261 * 120.14411 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.96410 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.46776 * 199.99601 * 11 10 9 13 13 N 1.46904 * 109.47222 * 319.99698 * 11 10 9 14 14 C 1.50698 * 109.47122 * 79.99813 * 11 10 9 15 15 H 1.07996 * 120.00311 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99805 * 179.97438 * 14 11 10 17 17 N 1.31505 * 120.00009 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99697 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46548 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47039 * 299.99725 * 18 16 14 21 21 H 1.48497 * 109.47336 * 60.00196 * 18 16 14 22 22 C 1.38135 * 120.06485 * 0.29254 * 10 9 8 23 23 H 1.09003 * 109.47116 * 270.00665 * 1 2 3 24 24 H 1.08999 * 109.46864 * 29.99874 * 1 2 3 25 25 H 1.08993 * 109.47485 * 150.00093 * 1 2 3 26 26 H 0.97004 * 120.00114 * 0.02562 * 4 3 2 27 27 H 0.97000 * 119.99714 * 179.97438 * 4 3 2 28 28 H 1.07991 * 120.03995 * 0.02562 * 7 6 2 29 29 H 1.07989 * 119.97049 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.92644 * 180.02562 * 9 8 7 31 31 H 1.00898 * 111.00098 * 296.04781 * 13 11 10 32 32 H 1.00896 * 110.99738 * 60.00191 * 13 11 10 33 33 H 0.96998 * 120.00563 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.02800 * 179.72501 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 7 1.4694 2.3319 0.1083 5 8 3.3508 1.1694 -0.0977 6 6 2.1647 -1.2120 0.0005 7 6 2.9450 -1.5654 -1.0927 8 6 3.6339 -2.7623 -1.0894 9 6 3.5469 -3.6089 0.0008 10 6 2.7709 -3.2599 1.0907 11 6 2.6795 -4.1851 2.2767 12 1 1.7887 -3.9447 2.8571 13 7 2.5984 -5.5751 1.8083 14 6 3.9027 -4.0166 3.1407 15 1 4.6698 -3.3106 2.8589 16 6 4.0424 -4.7640 4.2909 17 7 3.1081 -5.6234 4.6343 18 14 5.5583 -4.5546 5.3623 19 1 5.4676 -5.4656 6.5316 20 1 6.7721 -4.8822 4.5720 21 1 5.6400 -3.1494 5.8354 22 6 2.0751 -2.0666 1.0911 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 0.5025 2.3301 0.1865 27 1 1.9545 3.1719 0.1086 28 1 3.0130 -0.9050 -1.9444 29 1 4.2404 -3.0380 -1.9393 30 1 4.0869 -4.5442 0.0012 31 1 1.7529 -5.7299 1.2800 32 1 3.4133 -5.8224 1.2672 33 1 2.3208 -5.7318 4.0782 34 1 1.4656 -1.7966 1.9409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260995048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:35 Heat of formation + Delta-G solvation = 3.903090 kcal Electronic energy + Delta-G solvation = -17980.072363 eV Core-core repulsion = 15105.991262 eV Total energy + Delta-G solvation = -2874.081102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.46522 -38.53254 -35.73446 -34.60235 -33.43332 -31.42248 -30.02686 -29.02751 -26.73471 -25.56634 -23.13873 -22.27064 -21.10685 -19.51743 -18.20771 -17.21062 -16.68352 -16.21983 -15.81525 -15.24719 -14.69990 -14.24449 -13.85198 -13.72512 -13.47728 -13.30723 -13.11315 -12.69387 -12.39320 -11.91328 -11.64373 -11.03956 -10.88910 -10.67922 -10.21071 -10.20354 -9.99360 -9.77402 -9.13885 -8.87104 -8.31868 -8.14562 -7.89151 -7.44431 -6.15664 -3.98375 1.74519 1.97264 2.73451 3.16818 3.51946 3.53089 3.71662 4.05962 4.32679 4.64976 4.85288 5.17044 5.37577 5.44437 5.47491 5.49482 5.73231 5.84799 5.93899 6.09491 6.12873 6.36885 6.55448 6.77222 6.82238 6.89739 6.92362 7.04502 7.40560 7.55428 7.75338 8.00451 8.31601 8.59057 8.67932 8.77647 9.08051 9.84503 11.24115 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.006019 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.015958 B = 4650.816876 C = 4965.506932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.584 5.584 3 C 0.707 3.293 4 N -0.867 5.867 5 O -0.577 6.577 6 C 0.146 3.854 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.119 4.119 10 C -0.057 4.057 11 C 0.238 3.762 12 H 0.037 0.963 13 N -0.829 5.829 14 C -0.607 4.607 15 H 0.047 0.953 16 C 0.039 3.961 17 N -0.891 5.891 18 Si 1.063 2.937 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.290 1.290 22 C -0.121 4.121 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.396 0.604 27 H 0.413 0.587 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.302 0.698 32 H 0.327 0.673 33 H 0.289 0.711 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 11.052 -11.123 17.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.318 5.318 3 C 0.407 3.593 4 N -0.437 5.437 5 O -0.453 6.453 6 C 0.055 3.945 7 C -0.145 4.145 8 C -0.132 4.132 9 C -0.138 4.138 10 C -0.060 4.060 11 C 0.129 3.871 12 H 0.055 0.945 13 N -0.356 5.356 14 C -0.646 4.646 15 H 0.065 0.935 16 C -0.171 4.171 17 N -0.525 5.525 18 Si 0.892 3.108 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.141 4.141 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.225 0.775 27 H 0.245 0.755 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.101 0.899 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.225 10.148 -9.014 14.933 hybrid contribution -1.013 1.540 -2.376 3.007 sum -7.238 11.688 -11.391 17.854 Atomic orbital electron populations 1.21804 0.79089 1.03162 1.02207 1.44356 1.06191 1.03552 1.77700 1.15897 0.85214 0.80538 0.77688 1.43085 1.11066 1.07378 1.82161 1.91005 1.11766 1.85871 1.56617 1.17266 0.97290 0.85318 0.94585 1.20902 0.99335 0.96805 0.97468 1.20915 0.99464 0.94219 0.98581 1.21013 0.99130 1.00170 0.93455 1.21359 0.92336 0.95599 0.96701 1.18353 0.98633 0.81954 0.88116 0.94536 1.59468 1.04728 1.25495 1.45942 1.21688 1.05946 1.27205 1.09767 0.93484 1.25619 1.02282 0.92952 0.96238 1.70555 1.09611 1.31675 1.40685 0.83655 0.75082 0.75903 0.76156 1.20889 1.21568 1.21687 1.21049 1.01726 0.95132 0.96206 0.92202 0.91299 0.90346 0.77522 0.75476 0.86996 0.86487 0.86285 0.88794 0.86007 0.89855 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 9.95 59.85 0.60 1.35 16 2 N -0.58 -8.53 2.93 -126.24 -0.37 -8.90 16 3 C 0.71 10.90 8.42 -86.91 -0.73 10.17 16 4 N -0.87 -8.34 8.72 27.63 0.24 -8.10 16 5 O -0.58 -11.78 16.67 5.30 0.09 -11.69 16 6 C 0.15 2.61 4.89 -83.69 -0.41 2.20 16 7 C -0.13 -2.20 9.21 -39.39 -0.36 -2.56 16 8 C -0.11 -1.96 10.04 -39.61 -0.40 -2.35 16 9 C -0.12 -2.31 9.29 -39.55 -0.37 -2.68 16 10 C -0.06 -1.22 4.88 -104.65 -0.51 -1.73 16 11 C 0.24 5.86 2.47 -70.02 -0.17 5.68 16 12 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 13 N -0.83 -18.71 7.62 -6.65 -0.05 -18.77 16 14 C -0.61 -17.18 8.70 -34.44 -0.30 -17.47 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 16 C 0.04 1.12 5.39 -17.82 -0.10 1.02 16 17 N -0.89 -26.92 13.51 55.43 0.75 -26.18 16 18 Si 1.06 25.83 29.90 -169.99 -5.08 20.75 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.12 -2.39 9.44 -39.40 -0.37 -2.76 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.42 6.60 -51.93 -0.34 0.08 16 25 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 26 H 0.40 2.47 6.70 -40.82 -0.27 2.20 16 27 H 0.41 3.38 8.93 -40.82 -0.36 3.02 16 28 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.12 2.23 6.66 -52.49 -0.35 1.88 16 31 H 0.30 5.95 9.06 -39.29 -0.36 5.59 16 32 H 0.33 7.12 7.33 -39.29 -0.29 6.83 16 33 H 0.29 8.68 6.40 -40.82 -0.26 8.42 16 34 H 0.12 2.27 8.03 -52.48 -0.42 1.85 16 LS Contribution 290.95 15.07 4.38 4.38 Total: -1.00 -35.33 290.95 -7.12 -42.45 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -3.95 Total: 15.18 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -3.12 Total: -9.13 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.57 Total: -61.94 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.33 -7.12 -42.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.358 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds