Wall clock time and date at job start Mon Mar 30 2020 21:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 120.00375 * 2 1 4 4 N 1.34782 * 119.99675 * 5.32148 * 3 2 1 5 5 O 1.21580 * 120.00200 * 185.32569 * 3 2 1 6 6 C 1.39943 * 119.99883 * 179.97438 * 2 1 3 7 7 C 1.38886 * 120.06427 * 114.54348 * 6 2 1 8 8 C 1.38101 * 119.92925 * 180.02562 * 7 6 2 9 9 C 1.38307 * 120.06518 * 0.02562 * 8 7 6 10 10 C 1.38261 * 120.14411 * 359.97438 * 9 8 7 11 11 C 1.50697 * 119.96410 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.46776 * 199.99601 * 11 10 9 13 13 N 1.46904 * 109.47222 * 319.99698 * 11 10 9 14 14 C 1.50698 * 109.47122 * 79.99813 * 11 10 9 15 15 H 1.07996 * 120.00311 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99805 * 179.97438 * 14 11 10 17 17 N 1.31505 * 120.00009 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99697 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46548 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47039 * 299.99725 * 18 16 14 21 21 H 1.48497 * 109.47336 * 60.00196 * 18 16 14 22 22 C 1.38135 * 120.06485 * 0.29254 * 10 9 8 23 23 H 1.09003 * 109.47116 * 270.00665 * 1 2 3 24 24 H 1.08999 * 109.46864 * 29.99874 * 1 2 3 25 25 H 1.08993 * 109.47485 * 150.00093 * 1 2 3 26 26 H 0.97004 * 120.00114 * 0.02562 * 4 3 2 27 27 H 0.97000 * 119.99714 * 179.97438 * 4 3 2 28 28 H 1.07991 * 120.03995 * 0.02562 * 7 6 2 29 29 H 1.07989 * 119.97049 * 179.97438 * 8 7 6 30 30 H 1.08002 * 119.92644 * 180.02562 * 9 8 7 31 31 H 1.00898 * 111.00098 * 296.04781 * 13 11 10 32 32 H 1.00896 * 110.99738 * 60.00191 * 13 11 10 33 33 H 0.96998 * 120.00563 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.02800 * 179.72501 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 7 1.4694 2.3319 0.1083 5 8 3.3508 1.1694 -0.0977 6 6 2.1647 -1.2120 0.0005 7 6 2.9450 -1.5654 -1.0927 8 6 3.6339 -2.7623 -1.0894 9 6 3.5469 -3.6089 0.0008 10 6 2.7709 -3.2599 1.0907 11 6 2.6795 -4.1851 2.2767 12 1 1.7887 -3.9447 2.8571 13 7 2.5984 -5.5751 1.8083 14 6 3.9027 -4.0166 3.1407 15 1 4.6698 -3.3106 2.8589 16 6 4.0424 -4.7640 4.2909 17 7 3.1081 -5.6234 4.6343 18 14 5.5583 -4.5546 5.3623 19 1 5.4676 -5.4656 6.5316 20 1 6.7721 -4.8822 4.5720 21 1 5.6400 -3.1494 5.8354 22 6 2.0751 -2.0666 1.0911 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8899 -0.5138 26 1 0.5025 2.3301 0.1865 27 1 1.9545 3.1719 0.1086 28 1 3.0130 -0.9050 -1.9444 29 1 4.2404 -3.0380 -1.9393 30 1 4.0869 -4.5442 0.0012 31 1 1.7529 -5.7299 1.2800 32 1 3.4133 -5.8224 1.2672 33 1 2.3208 -5.7318 4.0782 34 1 1.4656 -1.7966 1.9409 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:34 Heat of formation + Delta-G solvation = -23.390258 kcal Electronic energy + Delta-G solvation = -17981.255892 eV Core-core repulsion = 15105.991262 eV Total energy + Delta-G solvation = -2875.264630 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.69030 -39.97620 -37.21642 -36.15118 -34.57815 -33.40063 -31.54244 -30.42474 -27.78611 -27.52850 -24.81170 -23.76685 -22.62855 -20.85107 -19.44041 -18.71091 -18.24936 -17.61627 -17.10352 -16.53660 -16.37321 -15.72021 -15.60257 -15.22580 -15.06828 -14.68948 -14.18512 -14.05792 -13.81736 -13.50339 -13.19615 -12.80915 -12.59090 -12.40649 -12.02662 -11.87864 -11.51526 -10.90125 -10.79448 -10.49752 -10.31601 -9.66276 -9.52781 -9.14366 -8.39741 -6.25769 0.30347 0.47521 1.54518 1.61345 1.64843 1.81144 2.00042 2.60132 2.79938 3.28509 3.30106 3.97092 4.00348 4.11651 4.18299 4.24122 4.45223 4.46267 4.55953 4.67782 4.76456 5.01721 5.08952 5.30770 5.42378 5.52764 5.71057 5.77631 5.90705 5.93547 6.15462 6.21452 6.67030 6.77469 6.79169 7.05826 7.51390 7.64081 8.96740 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025356 B = 0.006019 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.015958 B = 4650.816876 C = 4965.506932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.587 5.587 3 C 0.699 3.301 4 N -0.838 5.838 5 O -0.634 6.634 6 C 0.150 3.850 7 C -0.127 4.127 8 C -0.103 4.103 9 C -0.129 4.129 10 C -0.079 4.079 11 C 0.245 3.755 12 H 0.008 0.992 13 N -0.834 5.834 14 C -0.618 4.618 15 H 0.029 0.971 16 C -0.007 4.007 17 N -0.916 5.916 18 Si 1.106 2.894 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.281 1.281 22 C -0.135 4.135 23 H 0.068 0.932 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.415 0.585 27 H 0.423 0.577 28 H 0.127 0.873 29 H 0.151 0.849 30 H 0.121 0.879 31 H 0.319 0.681 32 H 0.332 0.668 33 H 0.279 0.721 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 12.423 -12.435 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.320 5.320 3 C 0.399 3.601 4 N -0.409 5.409 5 O -0.514 6.514 6 C 0.059 3.941 7 C -0.147 4.147 8 C -0.122 4.122 9 C -0.148 4.148 10 C -0.082 4.082 11 C 0.135 3.865 12 H 0.026 0.974 13 N -0.363 5.363 14 C -0.657 4.657 15 H 0.048 0.952 16 C -0.211 4.211 17 N -0.551 5.551 18 Si 0.929 3.071 19 H -0.206 1.206 20 H -0.201 1.201 21 H -0.207 1.207 22 C -0.156 4.156 23 H 0.086 0.914 24 H 0.126 0.874 25 H 0.100 0.900 26 H 0.248 0.752 27 H 0.257 0.743 28 H 0.145 0.855 29 H 0.169 0.831 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.614 11.558 -10.343 16.862 hybrid contribution -1.018 1.207 -2.057 2.593 sum -7.632 12.765 -12.401 19.364 Atomic orbital electron populations 1.22135 0.75956 1.05347 1.03485 1.44466 1.07989 1.02286 1.77284 1.16159 0.84717 0.81686 0.77505 1.42801 1.12069 1.05965 1.80090 1.90965 1.14361 1.86826 1.59267 1.17329 0.96941 0.86079 0.93784 1.21197 0.98719 0.97020 0.97773 1.21238 0.98851 0.93407 0.98664 1.21073 0.99186 1.00873 0.93675 1.21073 0.94609 0.96043 0.96504 1.17989 0.95839 0.83662 0.88989 0.97381 1.59203 1.05837 1.24549 1.46661 1.21959 1.06689 1.26413 1.10596 0.95235 1.26886 1.04137 0.92402 0.97692 1.70665 1.10136 1.33240 1.41036 0.83082 0.72650 0.76325 0.74994 1.20638 1.20094 1.20656 1.21020 1.02228 0.95369 0.96935 0.91386 0.87395 0.90015 0.75201 0.74321 0.85478 0.83114 0.86081 0.86887 0.85458 0.90931 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.95 127.77 1.27 2.42 16 2 N -0.59 -16.07 2.93 -671.56 -1.97 -18.04 16 3 C 0.70 20.31 8.42 179.05 1.51 21.82 16 4 N -0.84 -13.71 8.72 -184.75 -1.61 -15.32 16 5 O -0.63 -25.38 16.67 -3.97 -0.07 -25.45 16 6 C 0.15 5.23 4.89 38.15 0.19 5.42 16 7 C -0.13 -4.24 9.21 22.39 0.21 -4.04 16 8 C -0.10 -3.37 10.04 22.25 0.22 -3.15 16 9 C -0.13 -4.96 9.29 22.29 0.21 -4.75 16 10 C -0.08 -3.44 4.88 -19.88 -0.10 -3.54 16 11 C 0.24 12.37 2.47 43.42 0.11 12.48 16 12 H 0.01 0.46 7.86 -2.39 -0.02 0.44 16 13 N -0.83 -38.28 7.62 -174.95 -1.33 -39.61 16 14 C -0.62 -35.72 8.70 25.60 0.22 -35.50 16 15 H 0.03 1.77 7.74 -2.91 -0.02 1.74 16 16 C -0.01 -0.41 5.39 84.66 0.46 0.04 16 17 N -0.92 -56.26 13.51 21.45 0.29 -55.97 16 18 Si 1.11 52.30 29.90 68.60 2.05 54.35 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C -0.14 -5.40 9.44 22.39 0.21 -5.19 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 0.87 6.60 -2.39 -0.02 0.86 16 25 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 26 H 0.42 3.60 6.70 -92.71 -0.62 2.98 16 27 H 0.42 5.78 8.93 -92.71 -0.83 4.95 16 28 H 0.13 3.86 8.06 -2.92 -0.02 3.83 16 29 H 0.15 3.85 8.06 -2.92 -0.02 3.83 16 30 H 0.12 4.49 6.66 -2.91 -0.02 4.47 16 31 H 0.32 12.72 9.06 -89.70 -0.81 11.91 16 32 H 0.33 14.59 7.33 -89.70 -0.66 13.93 16 33 H 0.28 17.22 6.40 -92.71 -0.59 16.63 16 34 H 0.11 4.42 8.03 -2.91 -0.02 4.40 16 Total: -1.00 -78.08 290.95 0.28 -77.79 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -1.58 Total: 36.24 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 4.50 Total: -13.99 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -4.62 Total: -128.94 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.35 kcal Total: -78.08 0.28 -77.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.403 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds