Wall clock time and date at job start Mon Mar 30 2020 21:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46405 * 111.00234 * 2 1 4 4 C 1.53209 * 107.89064 * 268.80214 * 3 2 1 5 5 C 1.50472 * 110.65208 * 267.04638 * 4 3 2 6 6 N 1.32896 * 118.70502 * 229.72914 * 5 4 3 7 7 C 1.32062 * 121.52830 * 181.68026 * 6 5 4 8 8 O 1.35444 * 119.13752 * 180.49794 * 7 6 5 9 9 N 1.31942 * 121.75379 * 0.48857 * 7 6 5 10 10 C 1.33876 * 120.37710 * 359.25139 * 9 7 6 11 11 C 1.41551 * 120.54912 * 179.11064 * 10 9 7 12 12 H 1.07995 * 120.00016 * 179.97438 * 11 10 9 13 13 C 1.40104 * 119.99374 * 359.97438 * 11 10 9 14 14 N 1.30674 * 120.00742 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46988 * 60.00195 * 15 13 11 17 17 H 1.48500 * 109.47262 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47144 * 300.00384 * 15 13 11 19 19 C 1.37399 * 122.08807 * 49.94951 * 5 4 3 20 20 C 1.50525 * 123.32402 * 356.33903 * 19 5 4 21 21 C 1.46843 * 110.99871 * 235.27003 * 2 1 3 22 22 H 1.08997 * 109.47503 * 184.72187 * 1 2 3 23 23 H 1.09001 * 109.47176 * 304.72775 * 1 2 3 24 24 H 1.09003 * 109.46864 * 64.72291 * 1 2 3 25 25 H 1.09001 * 109.77434 * 28.39583 * 3 2 1 26 26 H 1.08993 * 109.77767 * 149.14738 * 3 2 1 27 27 H 1.09001 * 109.24449 * 27.35030 * 4 3 2 28 28 H 1.09001 * 109.23996 * 146.79087 * 4 3 2 29 29 H 0.96693 * 114.00295 * 269.98875 * 8 7 6 30 30 H 0.96995 * 120.00085 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.14570 * 269.03180 * 20 19 5 32 32 H 1.09002 * 109.14246 * 149.83536 * 20 19 5 33 33 H 1.09006 * 109.68054 * 65.76844 * 21 2 1 34 34 H 1.08996 * 109.68386 * 305.22235 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3668 0.0000 4 6 2.1909 1.7953 -1.4577 5 6 3.5959 1.5044 -1.9109 6 7 4.2852 2.4687 -2.5119 7 6 5.5102 2.2648 -2.9613 8 8 6.1724 3.2849 -3.5573 9 7 6.1064 1.0935 -2.8450 10 6 5.4812 0.0720 -2.2468 11 6 6.1101 -1.1913 -2.1366 12 1 5.5977 -2.0092 -1.6520 13 6 7.3973 -1.3806 -2.6565 14 7 8.0175 -0.3909 -3.2425 15 14 8.2277 -3.0476 -2.5105 16 1 7.4064 -4.0721 -3.2042 17 1 9.5739 -2.9863 -3.1343 18 1 8.3629 -3.4094 -1.0767 19 6 4.1827 0.2758 -1.7266 20 6 3.5167 -0.8570 -0.9925 21 6 1.9952 -0.7810 -1.1267 22 1 -0.3634 -1.0241 0.0846 23 1 -0.3633 0.5854 0.8446 24 1 -0.3633 0.4388 -0.9293 25 1 1.2835 2.0345 0.4878 26 1 2.9479 1.3955 0.5260 27 1 1.4895 1.2510 -2.0901 28 1 1.9995 2.8646 -1.5468 29 1 6.0369 3.3366 -4.5133 30 1 8.9088 -0.5220 -3.6020 31 1 3.7854 -0.8062 0.0627 32 1 3.8651 -1.8040 -1.4047 33 1 1.7335 -0.2931 -2.0656 34 1 1.5742 -1.7861 -1.1051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260996688.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:39 Heat of formation + Delta-G solvation = -7.496138 kcal Electronic energy + Delta-G solvation = -18593.227025 eV Core-core repulsion = 15718.651615 eV Total energy + Delta-G solvation = -2874.575409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59341 -39.54561 -37.79274 -36.00456 -33.89698 -33.75137 -31.47771 -29.66369 -27.91102 -26.37116 -25.34711 -23.30947 -22.45440 -20.96877 -19.65760 -19.03634 -17.98695 -17.16072 -16.89407 -16.39398 -16.20583 -15.28880 -15.02124 -14.63356 -14.35546 -14.23799 -13.54742 -13.33690 -13.25652 -13.01956 -12.92537 -12.75148 -12.59469 -12.43579 -12.27017 -11.98907 -11.91556 -11.74582 -11.50010 -10.91469 -10.51922 -9.54050 -9.35903 -9.10166 -8.37442 -6.79391 0.60793 0.93994 1.40817 1.54520 1.56057 2.18254 2.65273 2.88145 3.12431 3.64541 3.76264 4.04783 4.18508 4.27524 4.30907 4.46061 4.54321 4.62232 4.70377 4.79354 4.83448 4.97456 5.01999 5.10581 5.12823 5.19452 5.26494 5.28736 5.61471 5.79734 6.04268 6.17226 6.29516 6.41734 6.66379 6.87862 7.17779 8.08883 8.31771 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.008548 C = 0.006276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.860657 B = 3274.945756 C = 4460.070898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.551 5.551 3 C 0.073 3.927 4 C -0.089 4.089 5 C 0.165 3.835 6 N -0.645 5.645 7 C 0.458 3.542 8 O -0.484 6.484 9 N -0.562 5.562 10 C 0.246 3.754 11 C -0.434 4.434 12 H 0.114 0.886 13 C 0.020 3.980 14 N -0.745 5.745 15 Si 0.992 3.008 16 H -0.250 1.250 17 H -0.271 1.271 18 H -0.254 1.254 19 C -0.288 4.288 20 C -0.037 4.037 21 C 0.060 3.940 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.027 0.973 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.408 0.592 30 H 0.283 0.717 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -3.945 2.927 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.275 5.275 3 C -0.055 4.055 4 C -0.128 4.128 5 C 0.030 3.970 6 N -0.380 5.380 7 C 0.150 3.850 8 O -0.288 6.288 9 N -0.294 5.294 10 C 0.117 3.883 11 C -0.467 4.467 12 H 0.131 0.869 13 C -0.204 4.204 14 N -0.366 5.366 15 Si 0.811 3.189 16 H -0.174 1.174 17 H -0.196 1.196 18 H -0.178 1.178 19 C -0.297 4.297 20 C -0.075 4.075 21 C -0.067 4.067 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.045 0.955 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.265 0.735 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.098 -3.151 3.321 10.185 hybrid contribution 0.220 -0.262 -1.205 1.252 sum -8.878 -3.412 2.116 9.744 Atomic orbital electron populations 1.22505 0.85922 1.03159 1.00957 1.62026 1.08998 1.12790 1.43683 1.22092 1.00661 0.89573 0.93213 1.21043 0.90301 1.02555 0.98866 1.20817 0.95809 0.87904 0.92502 1.67460 1.09952 1.36691 1.23922 1.20542 0.85448 0.86015 0.92981 1.84529 1.70225 1.47077 1.26957 1.68876 1.37155 0.99270 1.24068 1.19201 0.89031 0.92259 0.87804 1.20235 0.99899 0.95436 1.31149 0.86871 1.27241 0.97805 1.02709 0.92668 1.70214 1.11746 1.33635 1.21016 0.85101 0.77453 0.76124 0.80193 1.17392 1.19590 1.17829 1.21175 0.98690 0.98252 1.11548 1.20016 0.93716 0.95412 0.98395 1.22236 0.94135 0.98466 0.91863 0.90296 0.90161 0.95468 0.88141 0.92950 0.89313 0.90459 0.73452 0.90592 0.92011 0.90801 0.94679 0.88629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.37 127.69 1.20 1.63 16 2 N -0.55 -14.96 4.82 -923.66 -4.46 -19.42 16 3 C 0.07 2.17 5.63 86.47 0.49 2.66 16 4 C -0.09 -3.06 5.33 29.85 0.16 -2.90 16 5 C 0.17 7.61 6.04 42.13 0.25 7.86 16 6 N -0.65 -33.19 10.28 -302.83 -3.11 -36.31 16 7 C 0.46 25.08 8.70 180.76 1.57 26.65 16 8 O -0.48 -23.50 13.64 -87.41 -1.19 -24.69 16 9 N -0.56 -32.87 8.07 -307.22 -2.48 -35.35 16 10 C 0.25 13.51 6.58 40.42 0.27 13.78 16 11 C -0.43 -22.24 8.67 23.54 0.20 -22.04 16 12 H 0.11 5.16 5.90 -2.91 -0.02 5.15 16 13 C 0.02 0.97 5.50 85.32 0.47 1.44 16 14 N -0.74 -39.88 11.52 21.85 0.25 -39.63 16 15 Si 0.99 35.92 29.56 68.60 2.03 37.95 16 16 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 17 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 19 C -0.29 -13.69 5.54 -19.35 -0.11 -13.80 16 20 C -0.04 -1.40 4.82 29.77 0.14 -1.25 16 21 C 0.06 1.81 5.13 86.29 0.44 2.25 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 1.33 7.94 -2.39 -0.02 1.31 16 24 H 0.03 0.52 7.90 -2.39 -0.02 0.50 16 25 H 0.10 2.35 7.64 -2.39 -0.02 2.33 16 26 H 0.05 1.84 7.70 -2.39 -0.02 1.83 16 27 H 0.09 2.84 5.54 -2.39 -0.01 2.83 16 28 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 29 H 0.41 15.24 9.06 -74.06 -0.67 14.57 16 30 H 0.28 13.72 8.29 -92.71 -0.77 12.96 16 31 H 0.06 2.40 7.97 -2.39 -0.02 2.38 16 32 H 0.07 2.77 6.09 -2.39 -0.01 2.75 16 33 H 0.04 1.12 5.30 -2.38 -0.01 1.11 16 34 H 0.10 2.38 8.13 -2.39 -0.02 2.36 16 Total: -1.00 -68.56 274.21 -3.40 -71.97 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.47 Total: 29.21 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 5.09 Total: 16.28 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -9.80 Total: -130.71 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.19 Total: -24.69 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -68.56 -3.40 -71.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260996688.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.470 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds