Wall clock time and date at job start Mon Mar 30 2020 21:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00131 * 2 1 4 4 C 1.34772 * 119.99874 * 179.97438 * 2 1 3 5 5 O 1.21285 * 120.00286 * 0.02562 * 4 2 1 6 6 C 1.50700 * 120.00362 * 180.02562 * 4 2 1 7 7 N 1.46495 * 109.47781 * 180.02562 * 6 4 2 8 8 C 1.39248 * 120.00206 * 180.02562 * 7 6 4 9 9 C 1.39712 * 120.78534 * 359.97438 * 8 7 6 10 10 C 1.38447 * 119.47508 * 180.02562 * 9 8 7 11 11 N 1.31531 * 121.10314 * 0.02562 * 10 9 8 12 12 C 1.33694 * 121.70245 * 359.68780 * 11 10 9 13 13 C 1.41457 * 119.79882 * 180.30448 * 12 11 10 14 14 H 1.08004 * 120.00251 * 180.26543 * 13 12 11 15 15 C 1.40018 * 120.00032 * 0.27156 * 13 12 11 16 16 N 1.30746 * 119.99876 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47083 * 59.99750 * 17 15 13 19 19 H 1.48493 * 109.47013 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46885 * 299.99764 * 17 15 13 21 21 C 1.39027 * 120.78183 * 180.02562 * 8 7 6 22 22 H 1.09003 * 109.47233 * 270.00247 * 1 2 3 23 23 H 1.09000 * 109.47344 * 30.00648 * 1 2 3 24 24 H 1.09005 * 109.47271 * 150.00487 * 1 2 3 25 25 H 1.09006 * 109.47105 * 240.00050 * 3 2 1 26 26 H 1.09000 * 109.47100 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47248 * 119.99875 * 3 2 1 28 28 H 1.09004 * 109.46949 * 59.99739 * 6 4 2 29 29 H 1.09004 * 109.46735 * 300.00414 * 6 4 2 30 30 H 0.97008 * 119.99671 * 359.97438 * 7 6 4 31 31 H 1.08000 * 120.26325 * 0.02562 * 9 8 7 32 32 H 1.07998 * 119.44697 * 180.02562 * 10 9 8 33 33 H 0.96994 * 120.00265 * 180.02562 * 16 15 13 34 34 H 1.08002 * 120.55759 * 359.94863 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2176 0.0005 6 6 3.6458 -1.1673 0.0011 7 7 4.1342 -2.5485 0.0010 8 6 5.5032 -2.8029 0.0020 9 6 6.4256 -1.7535 0.0026 10 6 7.7806 -2.0376 0.0031 11 7 8.2145 -3.2793 0.0024 12 6 7.3726 -4.3178 0.0075 13 6 7.8834 -5.6369 0.0132 14 1 7.2062 -6.4782 0.0130 15 6 9.2669 -5.8518 0.0192 16 7 10.0867 -4.8333 0.0190 17 14 9.9415 -7.5938 0.0273 18 1 9.4720 -8.3121 -1.1847 19 1 11.4258 -7.5497 0.0322 20 1 9.4628 -8.3042 1.2403 21 6 5.9845 -4.1072 0.0014 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3634 -0.8901 -0.5138 25 1 2.8242 1.3264 -0.8900 26 1 1.4892 2.0972 -0.0005 27 1 2.8241 1.3264 0.8900 28 1 4.0088 -0.6532 0.8911 29 1 4.0095 -0.6536 -0.8889 30 1 3.5038 -3.2858 0.0010 31 1 6.0843 -0.7289 0.0027 32 1 8.4932 -1.2261 0.0039 33 1 11.0452 -4.9822 0.0228 34 1 5.3020 -4.9443 0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309444224.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:12:10 Heat of formation + Delta-G solvation = -15.677272 kcal Electronic energy + Delta-G solvation = -17337.635356 eV Core-core repulsion = 14462.705186 eV Total energy + Delta-G solvation = -2874.930170 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12153 -39.97559 -36.95083 -36.52077 -35.12652 -31.94771 -31.43541 -29.32106 -28.08767 -27.49368 -25.84948 -23.50147 -22.46236 -20.46401 -19.52984 -18.14588 -17.74262 -17.23164 -17.17966 -16.33884 -16.20700 -15.88256 -15.14571 -14.99192 -14.61254 -14.17115 -14.11901 -13.93559 -13.72415 -13.49808 -13.38470 -12.92355 -12.83242 -12.81827 -12.59551 -12.11106 -11.61189 -11.50033 -11.09493 -10.96675 -9.77610 -9.52095 -9.40658 -8.41832 -8.22950 -6.49052 0.99417 1.36742 1.41713 1.43030 1.54288 1.61078 1.82977 2.26208 2.70220 2.92039 3.42473 4.05114 4.24094 4.30217 4.32732 4.33511 4.41423 4.49879 4.69586 4.77892 4.84238 4.88595 4.96118 5.06941 5.22578 5.34363 5.45427 5.66509 5.72288 5.87459 6.15681 6.31178 6.59569 6.78383 6.90213 6.98186 7.09194 8.33581 8.52050 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052397 B = 0.004155 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.254034 B = 6738.006767 C = 7246.494839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.616 5.616 3 C 0.066 3.934 4 C 0.504 3.496 5 O -0.582 6.582 6 C 0.118 3.882 7 N -0.743 5.743 8 C 0.263 3.737 9 C -0.362 4.362 10 C 0.134 3.866 11 N -0.545 5.545 12 C 0.254 3.746 13 C -0.477 4.477 14 H 0.080 0.920 15 C 0.026 3.974 16 N -0.754 5.754 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.372 4.372 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.398 0.602 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.279 0.721 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 13.008 -0.103 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.349 5.349 3 C -0.076 4.076 4 C 0.293 3.707 5 O -0.462 6.462 6 C -0.009 4.009 7 N -0.377 5.377 8 C 0.155 3.845 9 C -0.390 4.390 10 C -0.032 4.032 11 N -0.261 5.261 12 C 0.129 3.871 13 C -0.508 4.508 14 H 0.098 0.902 15 C -0.195 4.195 16 N -0.376 5.376 17 Si 0.807 3.193 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.185 1.185 21 C -0.399 4.399 22 H 0.079 0.921 23 H 0.124 0.876 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.233 0.767 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.089 0.911 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.615 12.570 -0.107 17.115 hybrid contribution -0.932 -0.897 0.025 1.293 sum -12.547 11.674 -0.081 17.138 Atomic orbital electron populations 1.21843 0.77925 1.03841 1.02528 1.47841 1.08093 1.06558 1.72373 1.22209 0.98283 0.83748 1.03344 1.20847 0.90454 0.83834 0.75614 1.90666 1.70716 1.32887 1.51947 1.21089 0.89773 0.85480 1.04604 1.44201 1.03072 1.06772 1.83681 1.17695 0.83383 0.93259 0.90191 1.21146 0.93454 0.97582 1.26820 1.22829 0.93510 0.94838 0.92022 1.68699 1.37623 0.98328 1.21443 1.18700 0.87707 0.93421 0.87227 1.19912 0.93150 0.92068 1.45676 0.90153 1.26963 0.96951 1.03167 0.92438 1.70235 1.04019 1.33720 1.29637 0.85217 0.77641 0.76566 0.79923 1.18493 1.18861 1.18483 1.21248 0.96222 0.94653 1.27820 0.92101 0.87580 0.92691 0.90654 0.87332 0.90732 0.88010 0.87984 0.76652 0.84873 0.83937 0.91078 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.41 127.77 1.33 2.52 16 2 N -0.62 -11.18 3.27 -871.90 -2.85 -14.03 16 3 C 0.07 0.61 9.74 127.77 1.24 1.86 16 4 C 0.50 13.69 7.74 87.66 0.68 14.37 16 5 O -0.58 -20.83 15.25 -3.05 -0.05 -20.88 16 6 C 0.12 3.20 4.24 85.63 0.36 3.56 16 7 N -0.74 -28.15 5.69 -342.71 -1.95 -30.11 16 8 C 0.26 12.06 6.69 38.51 0.26 12.32 16 9 C -0.36 -15.61 9.40 22.68 0.21 -15.40 16 10 C 0.13 6.50 11.17 84.79 0.95 7.45 16 11 N -0.55 -31.66 7.86 -189.38 -1.49 -33.15 16 12 C 0.25 15.01 6.55 40.18 0.26 15.27 16 13 C -0.48 -27.71 9.14 23.49 0.21 -27.50 16 14 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 15 C 0.03 1.42 5.50 85.29 0.47 1.89 16 16 N -0.75 -42.24 11.46 21.84 0.25 -41.99 16 17 Si 0.99 39.96 29.56 68.60 2.03 41.99 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 21 C -0.37 -19.97 9.72 22.99 0.22 -19.75 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.11 0.80 7.92 -2.39 -0.02 0.78 16 24 H 0.05 1.08 7.42 -2.38 -0.02 1.06 16 25 H 0.07 0.62 7.85 -2.38 -0.02 0.60 16 26 H 0.11 0.41 7.79 -2.39 -0.02 0.39 16 27 H 0.07 0.63 7.85 -2.39 -0.02 0.61 16 28 H 0.10 2.42 7.71 -2.39 -0.02 2.40 16 29 H 0.10 2.42 7.71 -2.39 -0.02 2.40 16 30 H 0.40 15.84 7.47 -92.70 -0.69 15.15 16 31 H 0.13 4.51 6.87 -2.91 -0.02 4.49 16 32 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 33 H 0.28 14.02 8.29 -92.71 -0.77 13.26 16 34 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -75.43 293.71 2.56 -72.87 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.42 Total: 28.70 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.20 Total: -3.41 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -6.04 Total: -119.27 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -75.43 2.56 -72.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309444224.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.194 kcal (2) G-P(sol) polarization free energy of solvation -75.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds