Wall clock time and date at job start Mon Mar 30 2020 21:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 117.00131 * 2 1 4 4 C 1.38756 * 120.05096 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94212 * 179.71799 * 4 3 2 6 6 C 1.38294 * 120.05499 * 0.28466 * 5 4 3 7 7 C 1.50707 * 119.94198 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46519 * 264.99769 * 7 6 5 9 9 N 1.46502 * 109.46754 * 180.02562 * 8 7 6 10 10 C 1.36943 * 120.00075 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99752 * 359.97438 * 10 9 8 12 12 C 1.38811 * 119.99870 * 179.97438 * 10 9 8 13 13 N 1.31623 * 119.99999 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00109 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47259 * 90.00320 * 14 12 10 16 16 H 1.48506 * 109.46675 * 210.00076 * 14 12 10 17 17 H 1.48500 * 109.47091 * 329.99508 * 14 12 10 18 18 C 1.38232 * 120.11124 * 359.97438 * 6 5 4 19 19 C 1.50701 * 119.97343 * 180.02562 * 18 6 5 20 20 C 1.38173 * 120.05823 * 359.97438 * 18 6 5 21 21 C 1.50701 * 120.02920 * 180.02562 * 20 18 6 22 22 H 1.09000 * 109.46950 * 300.00206 * 1 2 3 23 23 H 1.08994 * 109.46928 * 60.00366 * 1 2 3 24 24 H 1.08999 * 109.46959 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.03223 * 0.02562 * 4 3 2 26 26 H 1.08000 * 119.97249 * 180.29901 * 5 4 3 27 27 H 1.09002 * 109.47198 * 24.99224 * 7 6 5 28 28 H 1.08998 * 109.47261 * 144.99785 * 7 6 5 29 29 H 1.09006 * 109.47388 * 299.99797 * 8 7 6 30 30 H 1.08999 * 109.47462 * 60.00604 * 8 7 6 31 31 H 0.96998 * 120.00010 * 359.97438 * 9 8 7 32 32 H 0.96990 * 120.00344 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.47307 * 89.99874 * 19 18 6 34 34 H 1.08993 * 109.47381 * 209.99803 * 19 18 6 35 35 H 1.09005 * 109.47113 * 330.00347 * 19 18 6 36 36 H 1.08998 * 109.47168 * 89.99956 * 21 20 18 37 37 H 1.08993 * 109.47031 * 210.00405 * 21 20 18 38 38 H 1.09007 * 109.46737 * 330.00260 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 0.0054 6 6 3.3019 3.6758 0.0058 7 6 3.9860 5.0187 0.0129 8 6 4.3296 5.4233 -1.4221 9 7 4.9952 6.7284 -1.4153 10 6 5.3979 7.2978 -2.5938 11 1 5.2251 6.7846 -3.5282 12 6 6.0280 8.5346 -2.5873 13 7 6.4155 9.0817 -3.7200 14 14 6.3274 9.4219 -0.9710 15 1 7.6496 9.0233 -0.4250 16 1 6.3087 10.8890 -1.2009 17 1 5.2619 9.0591 -0.0024 18 6 4.0559 2.5173 0.0010 19 6 5.5607 2.5983 0.0021 20 6 3.4311 1.2849 -0.0039 21 6 4.2537 0.0222 -0.0086 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2127 2.3204 -0.0005 26 1 1.3339 4.5114 0.0098 27 1 3.3209 5.7630 0.4509 28 1 4.9009 4.9572 0.6021 29 1 4.9947 4.6790 -1.8602 30 1 3.4147 5.4848 -2.0113 31 1 5.1500 7.1895 -0.5760 32 1 6.8555 9.9461 -3.7156 33 1 5.9230 2.6132 1.0300 34 1 5.9717 1.7316 -0.5154 35 1 5.8759 3.5090 -0.5074 36 1 4.4519 -0.2861 1.0179 37 1 3.7065 -0.7659 -0.5256 38 1 5.1979 0.2057 -0.5216 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258907499.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:43 Heat of formation + Delta-G solvation = -12.911574 kcal Electronic energy + Delta-G solvation = -17838.714898 eV Core-core repulsion = 15067.445001 eV Total energy + Delta-G solvation = -2771.269897 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.40842 -38.14385 -35.27915 -33.44894 -32.65914 -31.03436 -28.91030 -27.69889 -26.75171 -25.99178 -23.62712 -21.43067 -20.82142 -20.29698 -17.64962 -17.50968 -16.74327 -15.89380 -15.12723 -14.59743 -14.29328 -14.19438 -13.93042 -13.67432 -13.43702 -12.99564 -12.71042 -12.62410 -12.43877 -12.09257 -12.07323 -11.69879 -11.49842 -11.40976 -11.06791 -10.78785 -10.71331 -10.52219 -10.48874 -10.11423 -9.56620 -8.85906 -8.53446 -7.90245 -7.19833 -5.73949 -3.09381 1.37937 1.49415 3.19497 3.39486 3.42262 3.47050 3.74953 4.61709 4.74871 4.79991 4.91518 4.96220 4.97195 5.18924 5.24739 5.33322 5.37523 5.52161 5.55703 5.60936 5.68505 5.77010 5.80382 5.88065 5.92148 5.96180 6.08677 6.16234 6.34556 6.40548 6.52105 6.69821 6.78930 6.88475 6.94238 7.37932 8.03073 8.45198 9.24505 9.96790 10.17078 11.44643 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.038122 B = 0.004384 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.298602 B = 6386.021046 C = 6638.003762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.116 3.884 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.099 4.099 7 C -0.091 4.091 8 C 0.163 3.837 9 N -0.758 5.758 10 C -0.243 4.243 11 H 0.090 0.910 12 C 0.003 3.997 13 N -0.935 5.935 14 Si 0.885 3.115 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.277 1.277 18 C -0.043 4.043 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.105 4.105 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.360 0.640 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -18.461 10.844 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.072 3.928 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.036 3.964 9 N -0.403 5.403 10 C -0.373 4.373 11 H 0.107 0.893 12 C -0.192 4.192 13 N -0.584 5.584 14 Si 0.715 3.285 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.203 1.203 18 C -0.043 4.043 19 C -0.182 4.182 20 C -0.119 4.119 21 C -0.161 4.161 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.114 0.886 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.193 0.807 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.758 -18.624 10.589 23.541 hybrid contribution -0.225 0.971 1.035 1.437 sum -9.984 -17.653 11.624 23.375 Atomic orbital electron populations 1.23001 0.78856 1.03522 1.01288 1.86025 1.20921 1.27119 1.89080 1.18737 0.91704 0.83976 0.98411 1.21115 0.99603 0.92318 1.09713 1.20835 0.94001 0.96958 0.97940 1.19661 0.93245 0.94864 1.02218 1.20796 1.00155 0.92611 0.99275 1.20607 0.95615 0.87618 0.92546 1.42745 1.72117 1.19521 1.05960 1.19077 1.30871 1.00977 0.86355 0.89251 1.24676 1.00779 0.97397 0.96393 1.69704 1.45899 1.18446 1.24316 0.86532 0.78113 0.79384 0.84432 1.21046 1.21744 1.20324 1.19464 0.96149 0.91056 0.97626 1.21007 0.90753 1.03964 1.02484 1.19015 0.90416 0.95596 1.06854 1.20640 0.99108 0.94416 1.01961 0.92868 0.92759 0.88559 0.85830 0.85772 0.91227 0.90892 0.95242 0.95555 0.80705 0.93086 0.91084 0.91138 0.89870 0.91719 0.91555 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.74 9.55 -19.44 -0.19 -3.92 16 3 C 0.12 1.53 6.66 -39.22 -0.26 1.27 16 4 C -0.21 -2.62 9.04 -39.43 -0.36 -2.98 16 5 C -0.08 -1.08 9.67 -39.60 -0.38 -1.47 16 6 C -0.10 -1.47 5.13 -104.60 -0.54 -2.00 16 7 C -0.09 -1.46 4.76 -27.88 -0.13 -1.59 16 8 C 0.16 3.28 6.05 -4.04 -0.02 3.25 16 9 N -0.76 -18.50 5.41 -59.91 -0.32 -18.82 16 10 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 11 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 12 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 13 N -0.94 -29.82 13.97 55.49 0.78 -29.04 16 14 Si 0.89 22.34 27.74 -169.99 -4.71 17.62 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 17 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 18 C -0.04 -0.60 5.88 -104.65 -0.62 -1.22 16 19 C -0.13 -1.58 8.80 36.01 0.32 -1.27 16 20 C -0.12 -1.58 5.89 -104.47 -0.62 -2.20 16 21 C -0.10 -1.15 9.38 36.01 0.34 -0.81 16 22 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 23 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.12 1.24 6.30 -52.49 -0.33 0.91 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.07 1.08 8.05 -51.93 -0.42 0.67 16 28 H 0.07 1.12 6.98 -51.93 -0.36 0.76 16 29 H 0.03 0.60 6.91 -51.93 -0.36 0.25 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.36 8.49 5.53 -40.82 -0.23 8.26 16 32 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.78 5.95 -51.93 -0.31 0.47 16 35 H 0.08 1.18 5.42 -51.93 -0.28 0.90 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.72 7.54 -51.93 -0.39 0.32 16 38 H 0.07 0.70 5.95 -51.93 -0.31 0.39 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -32.89 305.38 -6.87 -39.76 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.49 Total: 4.80 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.53 Total: -15.00 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.45 Total: -47.86 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.19 Total: -3.92 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.89 -6.87 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258907499.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds