Wall clock time and date at job start Mon Mar 30 2020 21:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00067 * 2 1 4 4 C 1.38235 * 119.99996 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00061 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00006 * 359.97438 * 4 3 2 7 7 C 1.38232 * 120.00016 * 359.97438 * 6 4 3 8 8 C 1.50706 * 120.00136 * 180.02562 * 7 6 4 9 9 H 1.08993 * 109.46700 * 339.99478 * 8 7 6 10 10 O 1.42900 * 109.46900 * 219.99965 * 8 7 6 11 11 C 1.52999 * 109.46957 * 99.99997 * 8 7 6 12 12 H 1.08993 * 109.47839 * 60.00178 * 11 8 7 13 13 N 1.46898 * 109.47222 * 299.99724 * 11 8 7 14 14 C 1.53006 * 109.46626 * 180.02562 * 11 8 7 15 15 C 1.50699 * 109.46610 * 184.99834 * 14 11 8 16 16 H 1.07998 * 120.00857 * 359.97438 * 15 14 11 17 17 C 1.37886 * 119.99708 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99820 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99904 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47195 * 90.00082 * 19 17 15 21 21 H 1.48502 * 109.47191 * 210.00027 * 19 17 15 22 22 H 1.48504 * 109.47273 * 329.99878 * 19 17 15 23 23 C 1.38232 * 119.99919 * 180.16561 * 2 1 3 24 24 H 1.09000 * 109.47230 * 90.00153 * 1 2 3 25 25 H 1.09002 * 109.47380 * 210.00044 * 1 2 3 26 26 H 1.09000 * 109.47110 * 330.00038 * 1 2 3 27 27 H 1.08003 * 120.00251 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47248 * 269.97862 * 5 4 3 29 29 H 1.09000 * 109.46859 * 29.97845 * 5 4 3 30 30 H 1.09004 * 109.46772 * 149.97827 * 5 4 3 31 31 H 1.08002 * 120.00109 * 180.02562 * 6 4 3 32 32 H 0.96708 * 114.00004 * 299.99732 * 10 8 7 33 33 H 1.00908 * 111.00028 * 300.00455 * 13 11 8 34 34 H 1.00899 * 110.99915 * 63.95724 * 13 11 8 35 35 H 1.08992 * 109.47046 * 304.99570 * 14 11 8 36 36 H 1.08997 * 109.47395 * 65.00111 * 14 11 8 37 37 H 0.97002 * 119.99655 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.00273 * 0.06677 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3340 -2.5023 0.0044 9 1 5.3520 -2.3345 -0.3469 10 8 3.6786 -3.4318 -0.8608 11 6 4.3715 -3.0676 1.4257 12 1 3.3535 -3.2354 1.7770 13 7 5.0452 -2.1121 2.3151 14 6 5.1370 -4.3924 1.4275 15 6 5.0692 -5.0097 2.8005 16 1 4.5341 -4.5074 3.5928 17 6 5.6914 -6.2156 3.0457 18 7 6.3434 -6.8271 2.0811 19 14 5.6079 -6.9805 4.7478 20 1 4.4152 -7.8607 4.8370 21 1 6.8341 -7.7822 4.9909 22 1 5.5082 -5.9067 5.7687 23 6 2.1981 -1.1971 -0.0035 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.5165 2.8160 -1.0278 29 1 3.7446 3.2623 0.5127 30 1 5.2861 2.3723 0.5146 31 1 5.3517 -0.0001 0.0024 32 1 2.7662 -3.6287 -0.6078 33 1 5.9916 -1.9398 2.0103 34 1 4.5241 -1.2506 2.3815 35 1 4.6900 -5.0713 0.7014 36 1 6.1784 -4.2106 1.1619 37 1 6.7808 -7.6756 2.2535 38 1 1.6581 -2.1325 -0.0073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259347071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:52 Heat of formation + Delta-G solvation = -49.067228 kcal Electronic energy + Delta-G solvation = -18135.048113 eV Core-core repulsion = 15362.210390 eV Total energy + Delta-G solvation = -2772.837724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.93573 -37.37480 -34.31963 -33.54139 -32.55324 -31.64881 -28.20604 -27.54965 -26.73335 -26.08691 -23.42460 -20.87547 -20.70067 -19.78676 -16.84003 -16.38568 -15.90996 -15.73098 -15.18535 -14.56882 -14.31793 -14.10150 -13.79821 -13.54096 -13.33024 -12.95766 -12.65689 -12.45838 -12.16442 -12.06333 -11.92569 -11.44022 -11.30357 -11.04873 -10.98767 -10.63100 -10.56471 -10.19774 -10.03294 -9.25602 -9.02442 -8.59984 -8.54805 -8.23812 -7.73770 -5.85962 -3.84481 1.36250 1.36805 3.40632 3.46605 3.52086 3.69619 4.56951 4.69476 4.71853 4.76792 4.84797 5.10645 5.25202 5.26305 5.41813 5.44407 5.46810 5.50808 5.52311 5.54709 5.62729 5.73423 5.76843 5.80229 6.10526 6.15148 6.37374 6.52759 6.56569 6.70315 6.88104 7.03497 7.64562 7.76539 7.94314 8.07959 8.14881 8.21215 8.59549 9.21891 9.77002 11.25760 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.004983 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.756234 B = 5618.066131 C = 5780.516062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.080 4.080 3 C -0.130 4.130 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.096 4.096 8 C 0.108 3.892 9 H 0.097 0.903 10 O -0.548 6.548 11 C 0.078 3.922 12 H 0.068 0.932 13 N -0.819 5.819 14 C 0.033 3.967 15 C -0.493 4.493 16 H 0.060 0.940 17 C 0.050 3.950 18 N -0.902 5.902 19 Si 0.891 3.109 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.274 1.274 23 C -0.117 4.117 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.369 0.631 33 H 0.333 0.667 34 H 0.321 0.679 35 H 0.029 0.971 36 H 0.013 0.987 37 H 0.257 0.743 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 17.041 -5.566 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.081 4.081 5 C -0.170 4.170 6 C -0.140 4.140 7 C -0.097 4.097 8 C 0.046 3.954 9 H 0.115 0.885 10 O -0.352 6.352 11 C -0.034 4.034 12 H 0.087 0.913 13 N -0.347 5.347 14 C -0.004 4.004 15 C -0.532 4.532 16 H 0.078 0.922 17 C -0.149 4.149 18 N -0.543 5.543 19 Si 0.719 3.281 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.199 1.199 23 C -0.135 4.135 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.216 0.784 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.047 0.953 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.999 16.336 -5.330 18.955 hybrid contribution -0.387 0.149 0.337 0.534 sum -8.386 16.485 -4.994 19.158 Atomic orbital electron populations 1.20785 0.91298 1.02771 1.02176 1.19835 0.95903 0.93008 0.99227 1.20834 0.93492 0.97332 1.03101 1.19846 0.93786 0.95126 0.99353 1.20779 0.99967 0.94083 1.02146 1.20860 0.99574 0.91374 1.02182 1.20820 0.94476 0.96444 0.97939 1.22110 0.95002 0.84155 0.94091 0.88484 1.86612 1.30492 1.64012 1.54060 1.22348 0.99606 0.95418 0.86011 0.91337 1.58751 1.05592 1.15060 1.55332 1.19109 0.94697 0.88961 0.97609 1.21164 1.32072 1.03825 0.96108 0.92208 1.25018 0.95884 0.97394 0.96642 1.69980 1.35583 1.16785 1.31905 0.86616 0.77148 0.79148 0.85182 1.20995 1.21535 1.19937 1.20750 0.93556 0.97574 1.01652 0.91300 0.91394 0.91707 0.86460 0.91355 0.91695 0.91457 0.86284 0.78383 0.85462 0.86759 0.95308 0.96820 0.93319 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.00 0.36 -0.68 16 2 C -0.08 -0.95 5.88 -104.63 -0.62 -1.57 16 3 C -0.13 -1.48 9.36 -39.58 -0.37 -1.85 16 4 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 5 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 6 C -0.12 -1.61 8.77 -39.58 -0.35 -1.96 16 7 C -0.10 -1.41 4.12 -104.62 -0.43 -1.84 16 8 C 0.11 1.85 2.95 -27.88 -0.08 1.77 16 9 H 0.10 1.72 8.00 -51.93 -0.42 1.30 16 10 O -0.55 -9.81 12.43 -35.23 -0.44 -10.25 16 11 C 0.08 1.56 2.51 -67.71 -0.17 1.39 16 12 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 13 N -0.82 -15.24 8.87 -4.67 -0.04 -15.28 16 14 C 0.03 0.86 4.55 -27.88 -0.13 0.74 16 15 C -0.49 -14.10 8.84 -34.44 -0.30 -14.41 16 16 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 17 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 18 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 19 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 20 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.12 -1.58 8.98 -39.58 -0.36 -1.94 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.12 1.46 8.04 -52.49 -0.42 1.04 16 32 H 0.37 5.40 7.50 45.56 0.34 5.74 16 33 H 0.33 5.91 9.00 -39.29 -0.35 5.55 16 34 H 0.32 5.26 7.69 -39.29 -0.30 4.95 16 35 H 0.03 0.80 7.54 -51.93 -0.39 0.41 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.12 1.48 6.78 -52.48 -0.36 1.12 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -32.42 316.31 -8.02 -40.45 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.23 Total: 11.12 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -2.79 Total: -21.19 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.70 Total: -42.26 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.44 Total: -10.25 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.42 -8.02 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259347071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.621 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds