Wall clock time and date at job start Mon Mar 30 2020 21:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00067 * 2 1 4 4 C 1.38235 * 119.99996 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00061 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00006 * 359.97438 * 4 3 2 7 7 C 1.38232 * 120.00016 * 359.97438 * 6 4 3 8 8 C 1.50706 * 120.00136 * 180.02562 * 7 6 4 9 9 H 1.08993 * 109.46700 * 339.99478 * 8 7 6 10 10 O 1.42900 * 109.46900 * 219.99965 * 8 7 6 11 11 C 1.52999 * 109.46957 * 99.99997 * 8 7 6 12 12 H 1.08993 * 109.47839 * 60.00178 * 11 8 7 13 13 N 1.46898 * 109.47222 * 299.99724 * 11 8 7 14 14 C 1.53006 * 109.46626 * 180.02562 * 11 8 7 15 15 C 1.50699 * 109.46610 * 184.99834 * 14 11 8 16 16 H 1.07998 * 120.00857 * 359.97438 * 15 14 11 17 17 C 1.37886 * 119.99708 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99820 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99904 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47195 * 90.00082 * 19 17 15 21 21 H 1.48502 * 109.47191 * 210.00027 * 19 17 15 22 22 H 1.48504 * 109.47273 * 329.99878 * 19 17 15 23 23 C 1.38232 * 119.99919 * 180.16561 * 2 1 3 24 24 H 1.09000 * 109.47230 * 90.00153 * 1 2 3 25 25 H 1.09002 * 109.47380 * 210.00044 * 1 2 3 26 26 H 1.09000 * 109.47110 * 330.00038 * 1 2 3 27 27 H 1.08003 * 120.00251 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47248 * 269.97862 * 5 4 3 29 29 H 1.09000 * 109.46859 * 29.97845 * 5 4 3 30 30 H 1.09004 * 109.46772 * 149.97827 * 5 4 3 31 31 H 1.08002 * 120.00109 * 180.02562 * 6 4 3 32 32 H 0.96708 * 114.00004 * 299.99732 * 10 8 7 33 33 H 1.00908 * 111.00028 * 300.00455 * 13 11 8 34 34 H 1.00899 * 110.99915 * 63.95724 * 13 11 8 35 35 H 1.08992 * 109.47046 * 304.99570 * 14 11 8 36 36 H 1.08997 * 109.47395 * 65.00111 * 14 11 8 37 37 H 0.97002 * 119.99655 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.00273 * 0.06677 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5022 0.0000 6 6 4.2717 0.0000 0.0016 7 6 3.5805 -1.1971 0.0027 8 6 4.3340 -2.5023 0.0044 9 1 5.3520 -2.3345 -0.3469 10 8 3.6786 -3.4318 -0.8608 11 6 4.3715 -3.0676 1.4257 12 1 3.3535 -3.2354 1.7770 13 7 5.0452 -2.1121 2.3151 14 6 5.1370 -4.3924 1.4275 15 6 5.0692 -5.0097 2.8005 16 1 4.5341 -4.5074 3.5928 17 6 5.6914 -6.2156 3.0457 18 7 6.3434 -6.8271 2.0811 19 14 5.6079 -6.9805 4.7478 20 1 4.4152 -7.8607 4.8370 21 1 6.8341 -7.7822 4.9909 22 1 5.5082 -5.9067 5.7687 23 6 2.1981 -1.1971 -0.0035 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.5165 2.8160 -1.0278 29 1 3.7446 3.2623 0.5127 30 1 5.2861 2.3723 0.5146 31 1 5.3517 -0.0001 0.0024 32 1 2.7662 -3.6287 -0.6078 33 1 5.9916 -1.9398 2.0103 34 1 4.5241 -1.2506 2.3815 35 1 4.6900 -5.0713 0.7014 36 1 6.1784 -4.2106 1.1619 37 1 6.7808 -7.6756 2.2535 38 1 1.6581 -2.1325 -0.0073 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259347071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:10:51 Heat of formation + Delta-G solvation = -71.776606 kcal Electronic energy + Delta-G solvation = -18136.032866 eV Core-core repulsion = 15362.210390 eV Total energy + Delta-G solvation = -2773.822476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.01256 -38.70322 -35.99161 -34.56150 -34.32002 -32.87665 -30.15956 -28.40049 -27.63020 -27.49527 -25.28424 -22.16521 -21.83171 -21.16603 -18.48307 -18.01626 -17.26490 -16.90076 -16.60014 -16.32649 -15.91846 -15.21804 -14.86724 -14.57065 -14.14301 -14.10192 -13.99644 -13.84480 -13.43760 -13.31876 -13.08423 -12.78674 -12.71710 -12.51545 -12.44887 -12.25188 -12.02024 -11.84921 -11.68508 -11.21248 -10.98654 -10.50235 -9.64498 -9.47594 -9.23268 -8.11063 -6.17699 0.37258 0.42625 1.41437 1.42835 1.54622 2.46444 2.72765 3.21723 3.49946 3.57627 3.81125 3.91878 3.99242 4.17135 4.18336 4.25203 4.47314 4.49033 4.59829 4.68509 4.79177 4.81689 4.85764 4.97862 5.03978 5.07359 5.22606 5.35902 5.51890 5.58310 5.62493 5.68014 5.71526 5.87118 6.10498 6.28679 6.48516 6.72592 6.76433 6.96919 7.48718 9.00759 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.004983 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.756234 B = 5618.066131 C = 5780.516062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.131 4.131 4 C -0.083 4.083 5 C -0.112 4.112 6 C -0.134 4.134 7 C -0.110 4.110 8 C 0.121 3.879 9 H 0.086 0.914 10 O -0.566 6.566 11 C 0.095 3.905 12 H 0.064 0.936 13 N -0.824 5.824 14 C 0.040 3.960 15 C -0.506 4.506 16 H 0.058 0.942 17 C -0.006 4.006 18 N -0.939 5.939 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.267 1.267 23 C -0.134 4.134 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.381 0.619 33 H 0.337 0.663 34 H 0.337 0.663 35 H 0.000 1.000 36 H -0.015 1.015 37 H 0.259 0.741 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 19.023 -4.751 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.168 4.168 6 C -0.152 4.152 7 C -0.111 4.111 8 C 0.059 3.941 9 H 0.103 0.897 10 O -0.372 6.372 11 C -0.018 4.018 12 H 0.082 0.918 13 N -0.355 5.355 14 C 0.003 3.997 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.203 4.203 18 N -0.581 5.581 19 Si 0.787 3.213 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.192 1.192 23 C -0.152 4.152 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.230 0.770 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.018 0.982 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.320 18.339 -4.513 21.061 hybrid contribution -0.005 -0.415 0.039 0.417 sum -9.326 17.924 -4.474 20.694 Atomic orbital electron populations 1.20836 0.89286 1.03653 1.03116 1.20175 0.97458 0.92545 0.98148 1.21227 0.93574 0.98259 1.01773 1.20185 0.94304 0.95660 0.98115 1.20834 1.00027 0.92897 1.03077 1.20987 0.99935 0.91604 1.02679 1.20511 0.94898 0.95253 1.00424 1.21771 0.95124 0.85469 0.91709 0.89651 1.86562 1.31617 1.64594 1.54448 1.21917 0.98098 0.93294 0.88447 0.91812 1.58639 1.06050 1.15728 1.55075 1.18923 0.93536 0.91550 0.95688 1.21489 1.31737 1.04141 0.97056 0.92421 1.25917 0.95489 0.98045 1.00806 1.70118 1.36534 1.17269 1.34206 0.85505 0.77421 0.78300 0.80108 1.19974 1.21118 1.19170 1.20913 0.93231 0.98676 1.02351 0.90234 0.91330 0.90059 0.83804 0.90351 0.90051 0.91167 0.85988 0.76962 0.84992 0.84924 0.98168 0.99643 0.93205 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.04 16 2 C -0.08 -1.81 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.60 9.36 22.27 0.21 -2.40 16 4 C -0.08 -1.75 5.88 -19.86 -0.12 -1.86 16 5 C -0.11 -1.66 10.01 71.24 0.71 -0.95 16 6 C -0.13 -3.41 8.77 22.27 0.20 -3.21 16 7 C -0.11 -3.19 4.12 -19.86 -0.08 -3.27 16 8 C 0.12 4.24 2.95 29.85 0.09 4.33 16 9 H 0.09 3.15 8.00 -2.39 -0.02 3.13 16 10 O -0.57 -20.95 12.43 -148.98 -1.85 -22.80 16 11 C 0.09 3.87 2.51 44.92 0.11 3.98 16 12 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 13 N -0.82 -30.72 8.87 -168.68 -1.50 -32.21 16 14 C 0.04 2.16 4.55 29.85 0.14 2.30 16 15 C -0.51 -29.46 8.84 25.60 0.23 -29.23 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 18 N -0.94 -59.01 13.29 21.45 0.28 -58.72 16 19 Si 0.96 46.18 29.54 68.60 2.03 48.20 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.13 -3.49 8.98 22.27 0.20 -3.29 16 24 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.99 16 27 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.12 2.93 8.04 -2.91 -0.02 2.90 16 32 H 0.38 11.53 7.50 -74.05 -0.56 10.98 16 33 H 0.34 12.09 9.00 -89.69 -0.81 11.29 16 34 H 0.34 10.79 7.69 -89.69 -0.69 10.10 16 35 H 0.00 0.00 7.54 -2.39 -0.02 -0.02 16 36 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.12 2.98 6.78 -2.91 -0.02 2.96 16 Total: -1.00 -70.08 316.31 0.72 -69.36 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.98 Total: 32.65 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 2.74 Total: -36.48 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -1.21 Total: -90.94 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.85 Total: -22.80 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -70.08 0.72 -69.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259347071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.417 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds