Wall clock time and date at job start Mon Mar 30 2020 21:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08991 * 109.47137 * 2 1 4 4 O 1.42901 * 109.46847 * 239.99755 * 2 1 3 5 5 C 1.53005 * 109.46874 * 120.00150 * 2 1 3 6 6 H 1.08998 * 109.47116 * 54.41642 * 5 2 1 7 7 C 1.53000 * 109.46888 * 294.41002 * 5 2 1 8 8 C 1.50696 * 109.46722 * 174.99956 * 7 5 2 9 9 C 1.38241 * 119.99765 * 90.00668 * 8 7 5 10 10 C 1.38234 * 120.00131 * 179.72385 * 9 8 7 11 11 C 1.38241 * 119.99689 * 0.25249 * 10 9 8 12 12 C 1.38231 * 120.00233 * 0.02562 * 11 10 9 13 13 C 1.38234 * 120.00078 * 359.97438 * 12 11 10 14 14 N 1.46492 * 109.46667 * 174.41575 * 5 2 1 15 15 C 1.46501 * 120.00430 * 60.91123 * 14 5 2 16 16 C 1.36942 * 119.99833 * 240.90727 * 14 5 2 17 17 H 1.07996 * 119.99938 * 351.37631 * 16 14 5 18 18 C 1.38815 * 119.99862 * 171.37464 * 16 14 5 19 19 N 1.31621 * 120.00162 * 5.75851 * 18 16 14 20 20 Si 1.86804 * 119.99888 * 185.75793 * 18 16 14 21 21 H 1.48492 * 109.47240 * 59.99547 * 20 18 16 22 22 H 1.48495 * 109.47337 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46590 * 299.99803 * 20 18 16 24 24 H 1.08997 * 109.46729 * 299.99972 * 1 2 3 25 25 H 1.09001 * 109.46612 * 59.99808 * 1 2 3 26 26 H 1.08998 * 109.46891 * 179.97438 * 1 2 3 27 27 H 0.96695 * 114.00053 * 304.95913 * 4 2 1 28 28 H 1.09003 * 109.46821 * 55.00444 * 7 5 2 29 29 H 1.09000 * 109.47481 * 295.00380 * 7 5 2 30 30 H 1.07999 * 119.99666 * 359.97438 * 9 8 7 31 31 H 1.07991 * 120.00324 * 180.27572 * 10 9 8 32 32 H 1.08002 * 119.99743 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.00021 * 180.02562 * 12 11 10 34 34 H 1.07999 * 120.00039 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.46879 * 3.14967 * 15 14 5 36 36 H 1.08999 * 109.47271 * 123.15370 * 15 14 5 37 37 H 1.09002 * 109.47281 * 243.15437 * 15 14 5 38 38 H 0.97002 * 119.99915 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7213 1.2493 6 1 1.5974 -1.7160 1.3006 7 6 1.6480 0.0765 2.4945 8 6 2.0415 -0.6934 3.7288 9 6 3.2923 -0.5099 4.2882 10 6 3.6513 -1.2119 5.4237 11 6 2.7614 -2.1012 5.9967 12 6 1.5128 -2.2889 5.4340 13 6 1.1538 -1.5869 4.2985 14 7 3.4988 -0.8388 1.1839 15 6 4.3291 0.3669 1.1280 16 6 4.0864 -2.0757 1.1752 17 1 3.4903 -2.9579 1.3561 18 6 5.4481 -2.1955 0.9339 19 7 6.1948 -1.1170 0.8260 20 14 6.2209 -3.8875 0.7621 21 1 5.5905 -4.6066 -0.3739 22 1 7.6773 -3.7433 0.5104 23 1 6.0093 -4.6577 2.0141 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6603 -1.5704 -1.2720 28 1 0.5703 0.2402 2.4967 29 1 2.1615 1.0379 2.4868 30 1 3.9874 0.1848 3.8405 31 1 4.6267 -1.0653 5.8634 32 1 3.0417 -2.6493 6.8841 33 1 0.8175 -2.9833 5.8819 34 1 0.1782 -1.7333 3.8591 35 1 3.6935 1.2494 1.2007 36 1 5.0368 0.3595 1.9569 37 1 4.8747 0.3890 0.1846 38 1 7.1463 -1.2007 0.6570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259359153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:05 Heat of formation + Delta-G solvation = 0.080094 kcal Electronic energy + Delta-G solvation = -19118.741902 eV Core-core repulsion = 16348.035366 eV Total energy + Delta-G solvation = -2770.706536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.96759 -37.48766 -34.90058 -32.91674 -30.63501 -30.33855 -29.99015 -27.04252 -25.96876 -24.12425 -22.00911 -21.95498 -20.87437 -19.13090 -16.85681 -16.32063 -15.75857 -15.14882 -14.70093 -14.42713 -14.31186 -13.94321 -13.51824 -12.90918 -12.82944 -12.32557 -12.16658 -12.03264 -11.91450 -11.66992 -11.19058 -10.89308 -10.72726 -10.66665 -10.46340 -10.36442 -10.16562 -10.07821 -9.96434 -9.62577 -9.20416 -8.41508 -8.31411 -8.04742 -6.73205 -5.51574 -2.90848 1.94612 2.01775 3.46447 3.51477 3.51670 4.37124 4.57272 5.03703 5.26100 5.32472 5.40968 5.50759 5.53031 5.60282 5.62635 5.76833 5.79577 5.93829 6.06307 6.09160 6.17100 6.20409 6.34187 6.41025 6.49093 6.63824 6.69239 6.81581 6.93984 6.99048 7.10313 7.32325 7.60619 7.72109 7.84712 8.07441 8.37923 8.51830 9.40170 10.02791 10.46167 11.48260 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.011556 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.135636 B = 2422.325694 C = 3716.042118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.086 0.914 4 O -0.546 6.546 5 C 0.158 3.842 6 H 0.062 0.938 7 C -0.102 4.102 8 C -0.053 4.053 9 C -0.079 4.079 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.130 4.130 13 C -0.127 4.127 14 N -0.585 5.585 15 C 0.174 3.826 16 C -0.228 4.228 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.918 5.918 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.288 1.288 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.364 0.636 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.111 0.889 35 H -0.014 1.014 36 H 0.037 0.963 37 H 0.046 0.954 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 1.764 5.381 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.024 3.976 3 H 0.104 0.896 4 O -0.349 6.349 5 C 0.048 3.952 6 H 0.080 0.920 7 C -0.141 4.141 8 C -0.053 4.053 9 C -0.097 4.097 10 C -0.138 4.138 11 C -0.154 4.154 12 C -0.148 4.148 13 C -0.145 4.145 14 N -0.307 5.307 15 C 0.030 3.970 16 C -0.358 4.358 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.566 5.566 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.215 1.215 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.210 0.790 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.005 0.995 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.005 2.336 5.265 11.544 hybrid contribution 0.263 -1.576 0.024 1.598 sum -9.742 0.760 5.288 11.111 Atomic orbital electron populations 1.22608 0.98041 1.01848 1.01803 1.22506 0.90755 0.97030 0.87328 0.89581 1.86612 1.73653 1.31024 1.43613 1.20944 0.86739 0.96848 0.90713 0.92011 1.21297 0.99669 0.99105 0.94039 1.19696 0.93931 0.96447 0.95195 1.21055 0.95399 0.99197 0.94021 1.21077 0.98881 0.97149 0.96716 1.20955 0.94530 0.99499 1.00383 1.20913 0.96694 1.00209 0.96982 1.20898 0.99361 0.97676 0.96600 1.43766 0.98156 1.03482 1.85248 1.20980 0.90827 0.83435 1.01742 1.19129 0.91641 0.84483 1.40502 0.91565 1.24771 0.96579 0.96625 1.01821 1.70180 1.04977 1.25436 1.56003 0.86380 0.78292 0.84350 0.77830 1.21388 1.21832 1.21474 0.91840 0.92779 0.92767 0.79020 0.91926 0.91371 0.85988 0.86904 0.87197 0.87167 0.87102 0.99537 0.94505 0.93580 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.27 37.16 0.34 -2.10 16 2 C 0.09 1.49 2.96 -26.72 -0.08 1.41 16 3 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 4 O -0.55 -10.76 13.10 -35.23 -0.46 -11.22 16 5 C 0.16 3.02 1.83 -67.93 -0.12 2.90 16 6 H 0.06 1.22 7.78 -51.93 -0.40 0.82 16 7 C -0.10 -1.71 4.63 -27.89 -0.13 -1.84 16 8 C -0.05 -0.94 4.95 -104.62 -0.52 -1.46 16 9 C -0.08 -1.51 9.31 -39.58 -0.37 -1.88 16 10 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 11 C -0.14 -2.17 10.05 -39.58 -0.40 -2.56 16 12 C -0.13 -2.01 10.05 -39.59 -0.40 -2.41 16 13 C -0.13 -2.07 9.70 -39.58 -0.38 -2.45 16 14 N -0.59 -13.98 1.95 -173.49 -0.34 -14.32 16 15 C 0.17 4.29 7.64 59.85 0.46 4.75 16 16 C -0.23 -6.16 9.80 -15.06 -0.15 -6.30 16 17 H 0.07 1.79 7.68 -52.49 -0.40 1.38 16 18 C 0.00 -0.06 5.46 -17.43 -0.10 -0.16 16 19 N -0.92 -26.76 9.48 55.49 0.53 -26.23 16 20 Si 0.90 22.51 29.56 -169.99 -5.02 17.49 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H 0.06 0.75 6.48 -51.93 -0.34 0.42 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.36 6.07 9.03 45.56 0.41 6.48 16 28 H 0.06 0.88 6.31 -51.93 -0.33 0.56 16 29 H 0.07 1.18 6.72 -51.93 -0.35 0.83 16 30 H 0.12 2.51 6.81 -52.49 -0.36 2.15 16 31 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 35 H -0.01 -0.30 6.08 -51.93 -0.32 -0.62 16 36 H 0.04 0.98 6.48 -51.93 -0.34 0.64 16 37 H 0.05 1.29 6.88 -51.93 -0.36 0.93 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -30.42 305.53 -7.76 -38.18 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.83 Total: 6.12 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.24 Total: -14.63 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.19 Total: -40.55 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.46 Total: -11.22 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.42 -7.76 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259359153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.259 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds