Wall clock time and date at job start Mon Mar 30 2020 21:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08991 * 109.47137 * 2 1 4 4 O 1.42901 * 109.46847 * 239.99755 * 2 1 3 5 5 C 1.53005 * 109.46874 * 120.00150 * 2 1 3 6 6 H 1.08998 * 109.47116 * 54.41642 * 5 2 1 7 7 C 1.53000 * 109.46888 * 294.41002 * 5 2 1 8 8 C 1.50696 * 109.46722 * 174.99956 * 7 5 2 9 9 C 1.38241 * 119.99765 * 90.00668 * 8 7 5 10 10 C 1.38234 * 120.00131 * 179.72385 * 9 8 7 11 11 C 1.38241 * 119.99689 * 0.25249 * 10 9 8 12 12 C 1.38231 * 120.00233 * 0.02562 * 11 10 9 13 13 C 1.38234 * 120.00078 * 359.97438 * 12 11 10 14 14 N 1.46492 * 109.46667 * 174.41575 * 5 2 1 15 15 C 1.46501 * 120.00430 * 60.91123 * 14 5 2 16 16 C 1.36942 * 119.99833 * 240.90727 * 14 5 2 17 17 H 1.07996 * 119.99938 * 351.37631 * 16 14 5 18 18 C 1.38815 * 119.99862 * 171.37464 * 16 14 5 19 19 N 1.31621 * 120.00162 * 5.75851 * 18 16 14 20 20 Si 1.86804 * 119.99888 * 185.75793 * 18 16 14 21 21 H 1.48492 * 109.47240 * 59.99547 * 20 18 16 22 22 H 1.48495 * 109.47337 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46590 * 299.99803 * 20 18 16 24 24 H 1.08997 * 109.46729 * 299.99972 * 1 2 3 25 25 H 1.09001 * 109.46612 * 59.99808 * 1 2 3 26 26 H 1.08998 * 109.46891 * 179.97438 * 1 2 3 27 27 H 0.96695 * 114.00053 * 304.95913 * 4 2 1 28 28 H 1.09003 * 109.46821 * 55.00444 * 7 5 2 29 29 H 1.09000 * 109.47481 * 295.00380 * 7 5 2 30 30 H 1.07999 * 119.99666 * 359.97438 * 9 8 7 31 31 H 1.07991 * 120.00324 * 180.27572 * 10 9 8 32 32 H 1.08002 * 119.99743 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.00021 * 180.02562 * 12 11 10 34 34 H 1.07999 * 120.00039 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.46879 * 3.14967 * 15 14 5 36 36 H 1.08999 * 109.47271 * 123.15370 * 15 14 5 37 37 H 1.09002 * 109.47281 * 243.15437 * 15 14 5 38 38 H 0.97002 * 119.99915 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7213 1.2493 6 1 1.5974 -1.7160 1.3006 7 6 1.6480 0.0765 2.4945 8 6 2.0415 -0.6934 3.7288 9 6 3.2923 -0.5099 4.2882 10 6 3.6513 -1.2119 5.4237 11 6 2.7614 -2.1012 5.9967 12 6 1.5128 -2.2889 5.4340 13 6 1.1538 -1.5869 4.2985 14 7 3.4988 -0.8388 1.1839 15 6 4.3291 0.3669 1.1280 16 6 4.0864 -2.0757 1.1752 17 1 3.4903 -2.9579 1.3561 18 6 5.4481 -2.1955 0.9339 19 7 6.1948 -1.1170 0.8260 20 14 6.2209 -3.8875 0.7621 21 1 5.5905 -4.6066 -0.3739 22 1 7.6773 -3.7433 0.5104 23 1 6.0093 -4.6577 2.0141 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6603 -1.5704 -1.2720 28 1 0.5703 0.2402 2.4967 29 1 2.1615 1.0379 2.4868 30 1 3.9874 0.1848 3.8405 31 1 4.6267 -1.0653 5.8634 32 1 3.0417 -2.6493 6.8841 33 1 0.8175 -2.9833 5.8819 34 1 0.1782 -1.7333 3.8591 35 1 3.6935 1.2494 1.2007 36 1 5.0368 0.3595 1.9569 37 1 4.8747 0.3890 0.1846 38 1 7.1463 -1.2007 0.6570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259359153.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:04 Heat of formation + Delta-G solvation = -18.447608 kcal Electronic energy + Delta-G solvation = -19119.545323 eV Core-core repulsion = 16348.035366 eV Total energy + Delta-G solvation = -2771.509957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34728 -38.94076 -36.62734 -34.58194 -32.26088 -31.67433 -31.48968 -28.44986 -28.02674 -25.65807 -23.69900 -23.27751 -22.21704 -20.69339 -18.83459 -17.69243 -17.33066 -16.80555 -16.13272 -15.93163 -15.71410 -15.47196 -15.13225 -14.64553 -14.21403 -13.71657 -13.67752 -13.57756 -13.33818 -13.07057 -12.76828 -12.65879 -12.35215 -12.29832 -12.16053 -12.00198 -11.81907 -11.78434 -11.63018 -11.30475 -10.76139 -10.47826 -9.63634 -9.40591 -8.69662 -7.63794 -5.01868 0.64390 0.70473 1.45479 1.47197 1.52489 2.55840 3.05032 3.43936 3.60634 3.91479 3.94033 4.13665 4.22454 4.29469 4.40583 4.44633 4.47214 4.56739 4.78178 4.79275 4.80006 4.88407 4.98217 5.06034 5.14894 5.26369 5.33322 5.42704 5.47903 5.60001 5.70901 5.72923 5.77701 5.95183 6.00709 6.32652 6.40994 7.05578 7.29706 8.04425 8.42749 9.34701 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.011556 C = 0.007533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.135636 B = 2422.325694 C = 3716.042118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.073 0.927 4 O -0.573 6.573 5 C 0.155 3.845 6 H 0.061 0.939 7 C -0.092 4.092 8 C -0.070 4.070 9 C -0.107 4.107 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.128 4.128 13 C -0.129 4.129 14 N -0.594 5.594 15 C 0.199 3.801 16 C -0.219 4.219 17 H 0.068 0.932 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.955 3.045 21 H -0.281 1.281 22 H -0.301 1.301 23 H -0.284 1.284 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.376 0.624 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.012 0.988 36 H 0.008 0.992 37 H 0.007 0.993 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.580 0.600 6.192 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 H 0.091 0.909 4 O -0.379 6.379 5 C 0.048 3.952 6 H 0.079 0.921 7 C -0.131 4.131 8 C -0.070 4.070 9 C -0.126 4.126 10 C -0.158 4.158 11 C -0.156 4.156 12 C -0.146 4.146 13 C -0.147 4.147 14 N -0.315 5.315 15 C 0.054 3.946 16 C -0.349 4.349 17 H 0.086 0.914 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.786 3.214 21 H -0.207 1.207 22 H -0.228 1.228 23 H -0.211 1.211 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.223 0.777 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.030 0.970 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.082 1.164 6.082 14.474 hybrid contribution 1.110 -1.217 -0.160 1.655 sum -11.972 -0.053 5.922 13.357 Atomic orbital electron populations 1.22465 0.93995 1.03233 1.03264 1.22468 0.93826 0.95651 0.85423 0.90943 1.86576 1.74637 1.32088 1.44587 1.21197 0.83745 0.97661 0.92640 0.92080 1.21193 1.01769 0.97875 0.92274 1.19874 0.93841 0.97499 0.95810 1.21008 0.96064 1.00090 0.95392 1.21268 0.99799 0.97943 0.96772 1.21311 0.94496 0.98733 1.01034 1.21370 0.96844 0.99960 0.96422 1.21258 1.00114 0.96650 0.96659 1.43853 1.00311 1.02108 1.85272 1.20490 0.90658 0.85047 0.98387 1.19377 0.91639 0.85670 1.38255 0.91443 1.25425 0.97436 0.99314 1.03214 1.70393 1.04419 1.26903 1.58007 0.85493 0.76934 0.81165 0.77828 1.20745 1.22767 1.21094 0.89858 0.91856 0.91400 0.77716 0.88180 0.92419 0.88922 0.86654 0.84525 0.83704 0.84190 0.96985 0.97359 0.97500 0.95282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.27 71.99 0.67 -3.21 16 2 C 0.09 2.87 2.96 30.60 0.09 2.96 16 3 H 0.07 2.58 7.36 -2.39 -0.02 2.56 16 4 O -0.57 -22.05 13.10 -148.98 -1.95 -24.01 16 5 C 0.16 5.72 1.83 44.99 0.08 5.81 16 6 H 0.06 2.26 7.78 -2.39 -0.02 2.24 16 7 C -0.09 -2.91 4.63 29.85 0.14 -2.78 16 8 C -0.07 -2.41 4.95 -19.86 -0.10 -2.51 16 9 C -0.11 -4.18 9.31 22.27 0.21 -3.97 16 10 C -0.14 -4.92 10.05 22.27 0.22 -4.69 16 11 C -0.14 -4.08 10.05 22.27 0.22 -3.86 16 12 C -0.13 -3.48 10.05 22.27 0.22 -3.26 16 13 C -0.13 -3.74 9.70 22.27 0.22 -3.52 16 14 N -0.59 -28.60 1.95 -702.79 -1.37 -29.98 16 15 C 0.20 10.19 7.64 127.77 0.98 11.17 16 16 C -0.22 -11.90 9.80 84.03 0.82 -11.08 16 17 H 0.07 3.59 7.68 -2.91 -0.02 3.57 16 18 C -0.06 -3.53 5.46 84.86 0.46 -3.07 16 19 N -0.95 -57.49 9.48 21.65 0.21 -57.28 16 20 Si 0.96 47.03 29.56 68.60 2.03 49.06 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 23 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 24 H 0.08 1.57 6.48 -2.39 -0.02 1.55 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.38 12.02 9.03 -74.06 -0.67 11.35 16 28 H 0.10 2.40 6.31 -2.39 -0.02 2.39 16 29 H 0.06 1.94 6.72 -2.39 -0.02 1.92 16 30 H 0.09 4.06 6.81 -2.91 -0.02 4.04 16 31 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.01 0.53 6.08 -2.39 -0.01 0.52 16 36 H 0.01 0.45 6.48 -2.39 -0.02 0.43 16 37 H 0.01 0.39 6.88 -2.39 -0.02 0.37 16 38 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.55 305.53 3.52 -64.03 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.38 Total: 20.18 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 4.24 Total: -22.01 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -1.17 Total: -87.26 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -1.95 Total: -24.01 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -67.55 3.52 -64.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259359153.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.583 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds