Wall clock time and date at job start Mon Mar 30 2020 21:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46927 * 2 1 4 4 O 1.42901 * 109.46823 * 119.99826 * 2 1 3 5 5 C 1.52994 * 109.47163 * 239.99922 * 2 1 3 6 6 C 1.53001 * 109.46940 * 174.99620 * 5 2 1 7 7 C 1.50701 * 109.47089 * 180.02562 * 6 5 2 8 8 C 1.38234 * 120.00262 * 90.00327 * 7 6 5 9 9 C 1.38233 * 120.00188 * 179.97438 * 8 7 6 10 10 C 1.38238 * 119.99847 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99714 * 180.02562 * 10 9 8 12 12 H 1.08994 * 109.47275 * 339.99926 * 11 10 9 13 13 N 1.46898 * 109.46797 * 219.99442 * 11 10 9 14 14 C 1.50700 * 109.47148 * 99.99703 * 11 10 9 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 C 1.38234 * 120.00038 * 0.27182 * 10 9 8 23 23 C 1.38235 * 119.99846 * 269.97601 * 7 6 5 24 24 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47050 * 300.00077 * 1 2 3 26 26 H 1.08996 * 109.46928 * 60.00013 * 1 2 3 27 27 H 0.96697 * 114.00136 * 60.01013 * 4 2 1 28 28 H 1.09003 * 109.46948 * 55.00334 * 5 2 1 29 29 H 1.08994 * 109.47244 * 294.99443 * 5 2 1 30 30 H 1.09002 * 109.47090 * 59.99891 * 6 5 2 31 31 H 1.08998 * 109.47684 * 300.00199 * 6 5 2 32 32 H 1.08004 * 119.99329 * 359.97438 * 8 7 6 33 33 H 1.07998 * 119.99887 * 180.02562 * 9 8 7 34 34 H 1.00892 * 111.00332 * 300.00256 * 13 11 10 35 35 H 1.00905 * 110.99665 * 63.96030 * 13 11 10 36 36 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 37 37 H 1.07997 * 119.99927 * 179.73156 * 22 10 9 38 38 H 1.08005 * 120.00180 * 0.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 6 3.5648 -0.6132 -1.3136 7 6 4.0672 -1.3230 -2.5444 8 6 4.1992 -0.6330 -3.7349 9 6 4.6605 -1.2840 -4.8637 10 6 4.9903 -2.6251 -4.8019 11 6 5.4937 -3.3346 -6.0324 12 1 5.2053 -2.7717 -6.9200 13 7 4.9091 -4.6808 -6.0949 14 6 6.9957 -3.4416 -5.9715 15 1 7.5320 -3.0366 -5.1260 16 6 7.6850 -4.0573 -6.9945 17 7 7.0319 -4.5509 -8.0237 18 14 9.5467 -4.1905 -6.9187 19 1 10.0427 -4.8907 -8.1306 20 1 10.1381 -2.8298 -6.8556 21 1 9.9392 -4.9574 -5.7091 22 6 4.8534 -3.3164 -3.6127 23 6 4.3965 -2.6642 -2.4827 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.7211 -1.5952 1.2329 28 1 1.6054 -0.2617 -2.1369 29 1 1.7518 -1.7715 -1.2055 30 1 3.9995 -1.0726 -0.4259 31 1 3.8532 0.4371 -1.3573 32 1 3.9419 0.4149 -3.7830 33 1 4.7640 -0.7447 -5.7937 34 1 5.1621 -5.2230 -5.2825 35 1 3.9067 -4.6351 -6.2014 36 1 6.0651 -4.4821 -8.0629 37 1 5.1069 -4.3651 -3.5655 38 1 4.2934 -3.2034 -1.5526 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062031.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:11:23 Heat of formation + Delta-G solvation = -53.734708 kcal Electronic energy + Delta-G solvation = -17629.506866 eV Core-core repulsion = 14856.466745 eV Total energy + Delta-G solvation = -2773.040121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19846 -38.01178 -35.31139 -33.26562 -31.53876 -30.70750 -30.26451 -28.18846 -25.65304 -23.91792 -22.30457 -21.83789 -21.34573 -19.83966 -16.84843 -16.58402 -16.16283 -15.84091 -15.09189 -14.69455 -14.28993 -14.10260 -13.64725 -13.51574 -13.16177 -13.06808 -12.80591 -12.40366 -12.24920 -12.06315 -11.84048 -11.38022 -11.09018 -11.00305 -10.81354 -10.69230 -10.43867 -10.20808 -10.08860 -9.98007 -8.85026 -8.40516 -8.32221 -7.79698 -7.44998 -6.17040 -4.00162 1.93049 1.93633 3.48903 3.50315 3.69066 4.10117 4.29653 4.54649 4.63225 4.77687 4.84663 5.07074 5.24029 5.35651 5.40609 5.45300 5.46843 5.55782 5.61622 5.70770 5.79711 5.82643 5.94746 6.06425 6.10625 6.17302 6.24546 6.51416 6.63134 6.93910 7.03491 7.04180 7.39980 7.44270 7.58113 7.99819 8.30465 8.66412 8.76994 9.06473 9.83401 11.22586 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.045521 B = 0.004019 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.949054 B = 6965.602107 C = 7117.592961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.100 3.900 3 H 0.097 0.903 4 O -0.564 6.564 5 C -0.144 4.144 6 C -0.069 4.069 7 C -0.112 4.112 8 C -0.119 4.119 9 C -0.122 4.122 10 C -0.067 4.067 11 C 0.235 3.765 12 H 0.037 0.963 13 N -0.829 5.829 14 C -0.607 4.607 15 H 0.046 0.954 16 C 0.038 3.962 17 N -0.891 5.891 18 Si 1.064 2.936 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.290 1.290 22 C -0.120 4.120 23 C -0.119 4.119 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.374 0.626 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.326 0.674 35 H 0.301 0.699 36 H 0.289 0.711 37 H 0.115 0.885 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.640 7.220 13.800 19.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.041 3.959 3 H 0.115 0.885 4 O -0.370 6.370 5 C -0.182 4.182 6 C -0.106 4.106 7 C -0.112 4.112 8 C -0.138 4.138 9 C -0.140 4.140 10 C -0.070 4.070 11 C 0.126 3.874 12 H 0.054 0.946 13 N -0.357 5.357 14 C -0.646 4.646 15 H 0.064 0.936 16 C -0.172 4.172 17 N -0.525 5.525 18 Si 0.893 3.107 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.138 4.138 23 C -0.137 4.137 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.221 0.779 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.617 7.127 12.390 17.228 hybrid contribution -2.079 0.365 1.586 2.640 sum -11.696 7.492 13.976 19.704 Atomic orbital electron populations 1.22511 0.96663 1.02531 1.02622 1.21980 0.92548 0.96798 0.84600 0.88497 1.86576 1.77304 1.29032 1.44070 1.22311 0.96353 1.01270 0.98281 1.20422 0.94432 1.00032 0.95732 1.19635 1.02388 0.94296 0.94917 1.20904 1.01087 0.98959 0.92809 1.21065 0.99974 0.94859 0.98125 1.21477 0.92969 0.94370 0.98149 1.18370 0.95371 0.85029 0.88582 0.94565 1.59461 1.11928 1.17166 1.47115 1.21673 0.89276 1.44281 1.09384 0.93611 1.25637 1.06140 0.92917 0.92521 1.70557 1.12573 1.39924 1.29471 0.83643 0.74934 0.76253 0.75866 1.20882 1.21667 1.21641 1.20935 1.00257 1.00057 0.92575 1.20885 1.00705 0.94134 0.97940 0.92338 0.91966 0.91552 0.77942 0.90990 0.91578 0.90927 0.91656 0.87198 0.86695 0.86121 0.88840 0.89798 0.86712 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 9.53 37.16 0.35 -0.97 16 2 C 0.10 0.86 3.59 -26.73 -0.10 0.77 16 3 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 4 O -0.56 -5.43 12.88 -35.23 -0.45 -5.89 16 5 C -0.14 -1.42 4.88 -26.73 -0.13 -1.55 16 6 C -0.07 -0.83 5.24 -27.88 -0.15 -0.97 16 7 C -0.11 -1.73 5.13 -104.62 -0.54 -2.27 16 8 C -0.12 -1.97 9.70 -39.58 -0.38 -2.35 16 9 C -0.12 -2.35 9.67 -39.58 -0.38 -2.74 16 10 C -0.07 -1.44 4.88 -104.62 -0.51 -1.95 16 11 C 0.24 5.83 2.47 -70.02 -0.17 5.66 16 12 H 0.04 0.97 7.87 -51.93 -0.41 0.56 16 13 N -0.83 -19.05 7.61 -6.65 -0.05 -19.10 16 14 C -0.61 -17.08 8.71 -34.44 -0.30 -17.38 16 15 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 16 C 0.04 1.08 5.39 -17.82 -0.10 0.98 16 17 N -0.89 -27.02 13.51 55.43 0.75 -26.27 16 18 Si 1.06 25.51 29.90 -169.99 -5.08 20.43 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.12 -2.31 9.29 -39.58 -0.37 -2.68 16 23 C -0.12 -1.96 9.70 -39.58 -0.38 -2.34 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.37 2.39 9.05 45.56 0.41 2.80 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 31 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.11 2.16 8.04 -52.49 -0.42 1.74 16 34 H 0.33 7.21 7.33 -39.30 -0.29 6.93 16 35 H 0.30 6.12 9.06 -39.29 -0.36 5.76 16 36 H 0.29 8.76 6.39 -40.82 -0.26 8.50 16 37 H 0.11 2.18 6.65 -52.49 -0.35 1.83 16 38 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -31.53 316.35 -8.31 -39.83 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -5.08 Total: 14.02 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -3.15 Total: -27.79 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.70 Total: -45.38 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.45 Total: -5.89 kcal Atomic # 14 Polarization: 25.51 SS G_CDS: -5.08 Total: 20.43 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.53 -8.31 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062031.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.900 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds